ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd15f07 |
|---|---|
| Clone Library Name | barley_pub |
>PSAH_HORVU (P20143) Photosystem I reaction center subunit VI, chloroplast| precursor (PSI-H) (Light-harvesting complex I 11 kDa protein) Length = 143 Score = 167 bits (423), Expect = 9e-42 Identities = 83/97 (85%), Positives = 83/97 (85%) Frame = -1 Query: 414 VAKYGEKSVYFDLDDIANTTGQWDLYGSDAASPYNGLQSKFFNTFAAPFTKRXXXXXXXX 235 VAKYGEKSVYFDLDDIANTTGQWDLYGSDA SPYNGLQSKFFNTFAAPFTKR Sbjct: 47 VAKYGEKSVYFDLDDIANTTGQWDLYGSDAPSPYNGLQSKFFNTFAAPFTKRGLLLKFLL 106 Query: 234 XXXXXLVAYVSASASPDLLPIKKGPQLPPTPGPRGKI 124 LVAYVSASASPDLLPIKKGPQLPPTPGPRGKI Sbjct: 107 IGGGSLVAYVSASASPDLLPIKKGPQLPPTPGPRGKI 143
>PSAH_ORYSA (P22181) Photosystem I reaction center subunit VI, chloroplast| precursor (PSI-H) (Light-harvesting complex I 11 kDa protein) (GOS5 protein) Length = 142 Score = 155 bits (391), Expect = 5e-38 Identities = 77/97 (79%), Positives = 78/97 (80%) Frame = -1 Query: 414 VAKYGEKSVYFDLDDIANTTGQWDLYGSDAASPYNGLQSKFFNTFAAPFTKRXXXXXXXX 235 VAKYGEKSVYFDL+DI NTTGQWDLY SDA SPYN LQSKFF TFA PFTKR Sbjct: 46 VAKYGEKSVYFDLEDIGNTTGQWDLYASDAPSPYNPLQSKFFETFAGPFTKRGLLLKFLL 105 Query: 234 XXXXXLVAYVSASASPDLLPIKKGPQLPPTPGPRGKI 124 LVAYVSASASPDLLPIKKGPQLPPTPGPRGKI Sbjct: 106 LGGGSLVAYVSASASPDLLPIKKGPQLPPTPGPRGKI 142
>PSAH_MAIZE (O65101) Photosystem I reaction center subunit VI, chloroplast| precursor (PSI-H) (Light-harvesting complex I 11 kDa protein) Length = 142 Score = 153 bits (386), Expect = 2e-37 Identities = 76/97 (78%), Positives = 78/97 (80%) Frame = -1 Query: 414 VAKYGEKSVYFDLDDIANTTGQWDLYGSDAASPYNGLQSKFFNTFAAPFTKRXXXXXXXX 235 VAKYG+KSVYFDLDDI NTTGQWDLYGSDA SPYN LQSKFF TFAAPFTKR Sbjct: 46 VAKYGDKSVYFDLDDIGNTTGQWDLYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLL 105 Query: 234 XXXXXLVAYVSASASPDLLPIKKGPQLPPTPGPRGKI 124 L+AYVSASASPDLLPIKKGPQ PP PGPRGKI Sbjct: 106 LGGGSLLAYVSASASPDLLPIKKGPQEPPQPGPRGKI 142
>PSAH_SPIOL (P22179) Photosystem I reaction center subunit VI, chloroplast| precursor (PSI-H) (Light-harvesting complex I 11 kDa protein) Length = 144 Score = 137 bits (344), Expect = 1e-32 Identities = 67/97 (69%), Positives = 74/97 (76%) Frame = -1 Query: 414 VAKYGEKSVYFDLDDIANTTGQWDLYGSDAASPYNGLQSKFFNTFAAPFTKRXXXXXXXX 235 VAKYG+KSVYFDL+DIANTTGQWD+YGSDA SPYN LQSKFF TFAAPFTKR Sbjct: 48 VAKYGDKSVYFDLEDIANTTGQWDVYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLI 107 Query: 234 XXXXXLVAYVSASASPDLLPIKKGPQLPPTPGPRGKI 124 L+ YVSA+A D+LPI +GPQ PP GPRGKI Sbjct: 108 LGGGSLLTYVSANAPQDVLPITRGPQQPPKLGPRGKI 144
>PSAH2_ARATH (Q9SUI6) Photosystem I reaction center subunit VI-2, chloroplast| precursor (PSI-H1) Length = 145 Score = 134 bits (337), Expect = 8e-32 Identities = 64/97 (65%), Positives = 75/97 (77%) Frame = -1 Query: 414 VAKYGEKSVYFDLDDIANTTGQWDLYGSDAASPYNGLQSKFFNTFAAPFTKRXXXXXXXX 235 VAKYG+KSVYFDL+D+ NTTGQWD+YGSDA SPYN LQSKFF TFAAPFTKR Sbjct: 49 VAKYGDKSVYFDLEDLGNTTGQWDVYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLI 108 Query: 234 XXXXXLVAYVSASASPDLLPIKKGPQLPPTPGPRGKI 124 L+ YVSA+++ D+LPIK+GPQ PP GPRGK+ Sbjct: 109 LGGGSLLTYVSANSTGDVLPIKRGPQEPPKLGPRGKL 145
>PSAH_BRARA (O04006) Photosystem I reaction center subunit VI, chloroplast| precursor (PSI-H) (Light-harvesting complex I 11 kDa protein) Length = 145 Score = 133 bits (335), Expect = 1e-31 Identities = 65/97 (67%), Positives = 74/97 (76%) Frame = -1 Query: 414 VAKYGEKSVYFDLDDIANTTGQWDLYGSDAASPYNGLQSKFFNTFAAPFTKRXXXXXXXX 235 VAKYG+KSVYFDL+D+ NTTGQWDLYGSDA SPYN LQSKFF TFAAPFTKR Sbjct: 49 VAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLI 108 Query: 234 XXXXXLVAYVSASASPDLLPIKKGPQLPPTPGPRGKI 124 L+ YVSAS++ D+LPIK+GPQ P GPRGK+ Sbjct: 109 LGGGSLLTYVSASSTGDVLPIKRGPQEKPKLGPRGKL 145
>PSAH1_ARATH (Q9SUI7) Photosystem I reaction center subunit VI-1, chloroplast| precursor (PSI-H1) Length = 145 Score = 132 bits (333), Expect = 2e-31 Identities = 63/97 (64%), Positives = 75/97 (77%) Frame = -1 Query: 414 VAKYGEKSVYFDLDDIANTTGQWDLYGSDAASPYNGLQSKFFNTFAAPFTKRXXXXXXXX 235 VAKYG+KSVYFDL+D+ NTTGQWD+YGSDA SPYN LQSKFF TFAAPFTKR Sbjct: 49 VAKYGDKSVYFDLEDLGNTTGQWDVYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLI 108 Query: 234 XXXXXLVAYVSASASPDLLPIKKGPQLPPTPGPRGKI 124 L+ YVSA+++ ++LPIK+GPQ PP GPRGK+ Sbjct: 109 LGGGSLLTYVSATSTGEVLPIKRGPQEPPKLGPRGKL 145
>PSAH_PEA (P20121) Photosystem I reaction center subunit VI (PSI-H)| (Light-harvesting complex I 11 kDa protein) (Fragment) Length = 36 Score = 69.7 bits (169), Expect = 3e-12 Identities = 30/36 (83%), Positives = 33/36 (91%) Frame = -1 Query: 408 KYGEKSVYFDLDDIANTTGQWDLYGSDAASPYNGLQ 301 KYG+KSVYFDL+DI NTTGQWDLYGSDA SPY+ LQ Sbjct: 1 KYGDKSVYFDLEDIGNTTGQWDLYGSDAPSPYSXLQ 36
>PSAH_CHLRE (P13352) Photosystem I reaction center subunit VI, chloroplast| precursor (PSI-H) (Light-harvesting complex I 11 kDa protein) (P28 protein) Length = 130 Score = 67.0 bits (162), Expect = 2e-11 Identities = 38/96 (39%), Positives = 45/96 (46%), Gaps = 1/96 (1%) Frame = -1 Query: 411 AKYGEKSVYFDLDDIANTTGQWDLYGSDAASPYNGLQSKFFNTFAAPFTKRXXXXXXXXX 232 AKYGE S YFDL D+ NTTG WD+YG D Y Q+KFF ++R Sbjct: 30 AKYGENSRYFDLQDMENTTGSWDMYGVDEKKRYPDNQAKFFTQATDIISRRESLRALVAL 89 Query: 231 XXXXLVAYVSASASPDL-LPIKKGPQLPPTPGPRGK 127 + + D LPI KGPQ T G GK Sbjct: 90 SGIAAIVTYGLKGAKDADLPITKGPQ---TTGENGK 122
>PSAH_CUCSA (P42050) Photosystem I reaction center subunit VI, chloroplast| (PSI-H) (Photosystem I 7.6 kDa protein) (PS I subunit 9B) (Fragment) Length = 24 Score = 33.1 bits (74), Expect = 0.26 Identities = 14/23 (60%), Positives = 16/23 (69%) Frame = -1 Query: 405 YGEKSVYFDLDDIANTTGQWDLY 337 Y +KSVYFDL+D NT GQ Y Sbjct: 2 YXDKSVYFDLEDKGNTXGQXXXY 24
>DAPA_RICTY (Q9AKE4) Dihydrodipicolinate synthase (EC 4.2.1.52) (DHDPS)| Length = 294 Score = 32.0 bits (71), Expect = 0.58 Identities = 10/37 (27%), Positives = 21/37 (56%) Frame = -3 Query: 133 RQDLNLILASPRLVLVYHGSRLISWIGIGSPVSMSFC 23 ++D N++ + +VL +H +I WI + S ++ C Sbjct: 180 KEDFNILTGNDEVVLAFHAQGVIGWISVTSNIAPKIC 216
>DAPA_RICPR (O05969) Dihydrodipicolinate synthase (EC 4.2.1.52) (DHDPS)| Length = 294 Score = 30.0 bits (66), Expect = 2.2 Identities = 9/35 (25%), Positives = 19/35 (54%) Frame = -3 Query: 127 DLNLILASPRLVLVYHGSRLISWIGIGSPVSMSFC 23 D N++ + +VL +H ++ WI + S ++ C Sbjct: 182 DFNILTGNDEVVLAFHAQGVVGWISVTSNIAPKLC 216
>YBGQ_ECOLI (P75750) Hypothetical outer membrane usher protein ybgQ precursor| Length = 815 Score = 29.6 bits (65), Expect = 2.9 Identities = 11/30 (36%), Positives = 20/30 (66%) Frame = -1 Query: 363 NTTGQWDLYGSDAASPYNGLQSKFFNTFAA 274 ++ G+WD+ G+ AAS Y+ + S + +F A Sbjct: 614 SSAGEWDISGTYAASDYSSVSSSWSGSFTA 643
>GP33_BPSP1 (P06226) Gene 33 protein| Length = 101 Score = 29.6 bits (65), Expect = 2.9 Identities = 11/30 (36%), Positives = 20/30 (66%) Frame = -1 Query: 381 DLDDIANTTGQWDLYGSDAASPYNGLQSKF 292 +L+ + N T +D+Y S+A + GL++KF Sbjct: 7 ELEKVRNHTEDYDVYNSEAERTFRGLKAKF 36
>VE5_HPV33 (P06426) Probable protein E5| Length = 75 Score = 29.3 bits (64), Expect = 3.7 Identities = 11/23 (47%), Positives = 16/23 (69%) Frame = -3 Query: 70 LISWIGIGSPVSMSFC*YLMLYL 2 L+ W+ +GSP+ + FC L LYL Sbjct: 37 LLLWVFVGSPLKIFFCYLLFLYL 59
>DAPF_RALSO (Q8Y344) Diaminopimelate epimerase (EC 5.1.1.7) (DAP epimerase)| Length = 292 Score = 28.9 bits (63), Expect = 4.9 Identities = 19/46 (41%), Positives = 23/46 (50%) Frame = -3 Query: 166 GAPAAAHPGTTRQDLNLILASPRLVLVYHGSRLISWIGIGSPVSMS 29 GA AAA G R +L SP V + G I+W G G PV M+ Sbjct: 229 GACAAAVAGIRRG----LLDSPVKVTTHGGDLTIAWAGEGEPVMMT 270
>PARP2_MOUSE (O88554) Poly [ADP-ribose] polymerase 2 (EC 2.4.2.30) (PARP-2)| (NAD(+) ADP-ribosyltransferase 2) (Poly[ADP-ribose] synthetase 2) (pADPRT-2) (mPARP-2) Length = 559 Score = 28.9 bits (63), Expect = 4.9 Identities = 10/18 (55%), Positives = 15/18 (83%) Frame = -3 Query: 103 PRLVLVYHGSRLISWIGI 50 P +L++HGSRL +W+GI Sbjct: 397 PNRMLLWHGSRLSNWVGI 414
>HRS_DROME (Q960X8) Hepatocyte growth factor-regulated tyrosine kinase| substrate Length = 760 Score = 28.9 bits (63), Expect = 4.9 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 1/58 (1%) Frame = -3 Query: 409 QVRGEERVLRPGRHRQHDGAVGPVRQRRGVALQRPAEQV-LQHLRRALHQARPAAQVP 239 Q+ G++ PG+ Q P +Q + + +Q+P Q + H+ HQA PAAQ P Sbjct: 664 QIPGQQPQQIPGQQPQQI----PGQQPQQIPVQQPQPQPQMGHVMLQQHQAPPAAQAP 717
>MEF2D_XENLA (Q03413) Myocyte-specific enhancer factor 2D homolog (Serum| response factor-like protein 1) (SL-1) Length = 498 Score = 28.5 bits (62), Expect = 6.4 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 8/37 (21%) Frame = -1 Query: 210 YVSASASPDLLPIKKGPQL--------PPTPGPRGKI 124 Y+SA ASP LLP+ G L PP+P ++ Sbjct: 225 YISARASPGLLPVSNGNSLGKVIQAKSPPSPNQNSQL 261
>CEZ2_MOUSE (Q8R554) Zinc finger A20 domain-containing protein ? (EC 3.-.-.-)| (Zinc finger protein Cezanne 2) (OTU domain-containing protein 7) Length = 926 Score = 28.1 bits (61), Expect = 8.3 Identities = 25/98 (25%), Positives = 36/98 (36%), Gaps = 1/98 (1%) Frame = -3 Query: 388 VLRPGRHRQHDGAVGPVRQRRGVALQRPAEQVLQHLRRALHQARPAAQVPAHXXXXXXXX 209 V RP R + +GA GP R G +P + VL+ L+ A+ A Sbjct: 692 VKRPARRPEAEGAPGPERASPGPTAAQPTQLVLK-LKERPSPGTGASARAARAAGGAASP 750 Query: 208 XXXXXXXXPAPHQEG-APAAAHPGTTRQDLNLILASPR 98 AP G P + P RQ + + A+ R Sbjct: 751 GPGGGARRAAPGTGGPTPGRSPPAPARQSVIHVQAAAR 788 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 52,293,685 Number of Sequences: 219361 Number of extensions: 983957 Number of successful extensions: 3570 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 3408 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3569 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2169600302 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
