>SIZ1_ARATH (Q680Q4) Sumoylation ligase E3 (EC 6.-.-.-) (SUMO E3 ligase)|
           (AtSIZ1)
          Length = 884

 Score = 45.1 bits (105), Expect = 2e-04
 Identities = 25/68 (36%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
 Frame = -2

Query: 606 DIIVLSDSDDDNVTVLSPNALNSSSADDTGDPFPPNPPETSGTCEEQP---GGGLDEASF 436
           ++IVLSDSDD+N  V++P    S    D G  FP NPP    +  E P    GG      
Sbjct: 599 EVIVLSDSDDENDLVITPGPAYSGCQTDGGLTFPLNPPGIINSYNEDPHSIAGGSSGLGL 658

Query: 435 LTFSEDFD 412
               ++FD
Sbjct: 659 FNDDDEFD 666

>TSSC4_MOUSE (Q9JHE7) Protein TSSC4|
          Length = 317

 Score = 39.3 bits (90), Expect = 0.011
 Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 7/79 (8%)
 Frame = -2

Query: 606 DIIVLSDSDDD-------NVTVLSPNALNSSSADDTGDPFPPNPPETSGTCEEQPGGGLD 448
           D + LSDSD D        V VLSP  L+    +D+G   PP+PP  + T   QP     
Sbjct: 22  DTVSLSDSDSDLSLPSGVEVQVLSPERLSEEGQEDSGPEDPPSPPTGTLTTAVQPFHLRG 81

Query: 447 EASFLTFSEDFDDLA*CVE 391
            +S  TFS+    +  C+E
Sbjct: 82  MSS--TFSQRSHSIFDCLE 98

>TSSC4_RAT (Q5XIB1) Protein TSSC4|
          Length = 317

 Score = 35.4 bits (80), Expect = 0.17
 Identities = 27/79 (34%), Positives = 36/79 (45%), Gaps = 7/79 (8%)
 Frame = -2

Query: 606 DIIVLSDSDDD-------NVTVLSPNALNSSSADDTGDPFPPNPPETSGTCEEQPGGGLD 448
           D + LSDSD D        V  LSP  L+  S +D+G   PP+ P    T   QP     
Sbjct: 22  DTVSLSDSDSDLSLPSGVEVQALSPERLSGESQEDSGPDDPPSHPTGIPTTAVQPFHLRG 81

Query: 447 EASFLTFSEDFDDLA*CVE 391
            +S  TFS+    +  C+E
Sbjct: 82  MSS--TFSQRSHSIFDCLE 98

>PMPC_CHLTR (O84419) Probable outer membrane protein pmpC precursor|
           (Polymorphic membrane protein C)
          Length = 1770

 Score = 34.7 bits (78), Expect = 0.28
 Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = -2

Query: 594 LSDSDDDNVTVLSPNALNSSSADDTGDPFPPNPPETSGTCEEQP--GGG 454
           ++ S D +VT  S N  +SSS D  GD   P  PE   T E     GGG
Sbjct: 778 VTSSSDSDVTASSDNPDSSSSGDSAGDSEEPTEPEAGSTTETLTLIGGG 826

>DLGP2_HUMAN (Q9P1A6) Disks large-associated protein 2 (DAP-2)|
           (SAP90/PSD-95-associated protein 2) (SAPAP2)
           (PSD-95/SAP90-binding protein 2) (Fragment)
          Length = 1019

 Score = 32.7 bits (73), Expect = 1.1
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +2

Query: 380 DSEHSTHHARSSKSSLNVRNEASSKPPPGCSS 475
           D  H  HHA+ SK S +   +   KP PG SS
Sbjct: 228 DDHHHAHHAKHSKRSKSKERKPEGKPRPGMSS 259

>CHK2_MOUSE (Q9Z265) Serine/threonine-protein kinase Chk2 (EC 2.7.11.1)|
          Length = 546

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
 Frame = +2

Query: 383 SEHSTHHARSSK---SSLNVRNEASSKPPPGCSSHVPEVSGGLGGNGSPVSSAELEFKAL 553
           S H +H + SSK   S+   +++     P G  S + E+S   G + S   +     ++ 
Sbjct: 3   SHHQSHSSTSSKAHDSASCSQSQGGFSQPQGTPSQLHELSQYQGSSSSSTGTVPSSSQSS 62

Query: 554 GDNTVTLSSSESLRTIISCSL 616
             ++ TLSS E++ T   CS+
Sbjct: 63  HSSSGTLSSLETVSTQELCSI 83

>CX020_HUMAN (Q8NDZ0) Protein CXorf20|
          Length = 799

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 9/102 (8%)
 Frame = -2

Query: 618 SREQDIIVLS--DSDDDN-----VTVLSPNALNSSS--ADDTGDPFPPNPPETSGTCEEQ 466
           ++EQD ++++  DSDD+N     +  +S  A NS++  ADD+      NP + + T    
Sbjct: 5   TQEQDFVIITVDDSDDNNDCSIEMVEVSETADNSTNDIADDSTYVTADNPTDDTATQPNF 64

Query: 465 PGGGLDEASFLTFSEDFDDLA*CVECSLSPSWNDH*SLVCDP 340
           PGG       L  S     +           W+DH SL   P
Sbjct: 65  PGGNDGHHRPLQMSYGSGSVT-----QAGVQWHDHSSLQPQP 101

>HSLV_BURPS (Q63YI3) ATP-dependent protease hslV (EC 3.4.25.-)|
          Length = 178

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 22/62 (35%), Positives = 31/62 (50%)
 Frame = +2

Query: 479 VPEVSGGLGGNGSPVSSAELEFKALGDNTVTLSSSESLRTIISCSLDTAGDMFIYRRRIK 658
           V +  GG+   GS  S A+   +AL +NT       S R I+  +L  AGDM IY    +
Sbjct: 118 VLDPEGGICAIGSGGSYAQAAARALAENT-----DLSPREIVEKALGIAGDMCIYTNHNR 172

Query: 659 IM 664
           I+
Sbjct: 173 II 174

>HSLV_BURMA (Q62EZ9) ATP-dependent protease hslV (EC 3.4.25.-)|
          Length = 178

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 22/62 (35%), Positives = 31/62 (50%)
 Frame = +2

Query: 479 VPEVSGGLGGNGSPVSSAELEFKALGDNTVTLSSSESLRTIISCSLDTAGDMFIYRRRIK 658
           V +  GG+   GS  S A+   +AL +NT       S R I+  +L  AGDM IY    +
Sbjct: 118 VLDPEGGICAIGSGGSYAQAAARALAENT-----DLSPREIVEKALGIAGDMCIYTNHNR 172

Query: 659 IM 664
           I+
Sbjct: 173 II 174

>ATG20_YEAST (Q07528) Sorting nexin-42 (Autophagy-related protein 20) (Cytoplasm|
           to vacuole targeting protein 20)
          Length = 640

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = +2

Query: 410 SSKSSLNVRNEASSKPPPGCSSHVPEVSGGLGGNGSPVSSAELEFKALGDN 562
           ++K +   RN   ++PP G + +V E      G GSP  S +      GDN
Sbjct: 10  NAKLNSETRNTGKAEPPHGTTEYVAEAEISKNGVGSPKKSPKKGKVGKGDN 60

>SLA1_YEAST (P32790) Cytoskeleton assembly control protein SLA1|
          Length = 1244

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 8/83 (9%)
 Frame = +2

Query: 425  LNVRNEASSKPPPGCSSHVPEVSGGLGGNGSPVSSAELE--------FKALGDNTVTLSS 580
            L  +  A+S P P      P  +GG     +PVSSA +         FK  G+N + LS+
Sbjct: 809  LEPKKAAASTPEPNLKDLEPVKTGGTTVPAAPVSSAPVSSAPAPLDPFKTGGNNILPLST 868

Query: 581  SESLRTIISCSLDTAGDMFIYRR 649
               +  +I     T GDM   +R
Sbjct: 869  GFVMMPMI-----TGGDMLPMQR 886

>LIN13_CAEEL (Q11107) Zinc finger protein lin-13 (Abnormal cell lineage protein|
            13)
          Length = 2248

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 9/76 (11%)
 Frame = -2

Query: 606  DIIVLSDSDDDNVTVLS---PNALNSSSADDTGDPFPPNPPETSGTCE-----EQPG-GG 454
            D+I+LSD +DD+  V     PN +   S+  T     PN PE+S  CE      Q G GG
Sbjct: 1437 DVIMLSDDEDDDCVVFEKAVPNGVAQGSSTST-----PN-PESSINCEVRVETSQAGYGG 1490

Query: 453  LDEASFLTFSEDFDDL 406
              +  ++   ED  DL
Sbjct: 1491 AQQPGYV--DEDDTDL 1504

>DLX2B_BRARE (Q98876) Homeobox protein Dlx2b (DLX-5) (Distal-less homeobox|
           protein 2b)
          Length = 276

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
 Frame = -2

Query: 564 VLSPNALNSSSADDTGDPFPPNPPETSG-TCEEQPGG--GLDEASFLT 430
           V S ++ +SS     G  FPPNP +  G T  EQP G       SFLT
Sbjct: 195 VASGDSPSSSPPPQAGWDFPPNPTQNDGDTVSEQPTGPPNTTAPSFLT 242

>YP16_METTM (P14935) Hypothetical 16.7 kDa protein|
          Length = 151

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 21/48 (43%), Positives = 26/48 (54%)
 Frame = +2

Query: 410 SSKSSLNVRNEASSKPPPGCSSHVPEVSGGLGGNGSPVSSAELEFKAL 553
           +SKSSL   +  SS    G SS    +SG LG N  P+SS+ L  K L
Sbjct: 40  NSKSSLRSGHSRSSNT--GRSSRQKSISGSLGSN--PISSSRLNSKTL 83

>CO6A1_MOUSE (Q04857) Collagen alpha-1(VI) chain precursor|
          Length = 1025

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = -2

Query: 543 NSSSADDTGDPFPPNPPETSGTCEEQPGGGLDEA 442
           NS S  D GDP  P PP   G   ++   G D A
Sbjct: 386 NSGSPGDEGDPGEPGPPGEKGEAGDEGNAGPDGA 419

>NPBL_COPCI (Q00333) Protein rad9 (SCC2 homolog)|
          Length = 2157

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 26/100 (26%), Positives = 40/100 (40%)
 Frame = +2

Query: 221 YFLNASFLAVPRTI*IINATAYILQHQIVCTFSRQARRTKGSQTKLQ*SFHEGDSEHSTH 400
           Y  + S+L+ P+         +  + Q V   + QA R+   Q   Q S     S  ST 
Sbjct: 114 YDQHLSYLSAPQVPQNRTEHWHTARDQSVRLLNEQASRSYPYQEPQQPSNWPASSYQSTP 173

Query: 401 HARSSKSSLNVRNEASSKPPPGCSSHVPEVSGGLGGNGSP 520
            A+S        +   + PPPG S+    ++  LGG   P
Sbjct: 174 FAQSVFQRTTPNSAYPTPPPPGISTSSSSLAFALGGPPQP 213

>K1C19_PONPY (Q5R8S9) Keratin, type I cytoskeletal 19 (Cytokeratin-19) (CK-19)|
           (Keratin-19) (K19)
          Length = 400

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +2

Query: 395 THHARSSKSSLNVRNEASSKPPPGCSSHVPEVSGGLGGNGSPVSSA 532
           ++   S+ SS       S +  PG +   P + GG GG G  VSSA
Sbjct: 5   SYRQSSAMSSFGGLGGGSVRFGPGVAFRAPSIHGGSGGRGVSVSSA 50

>K1C19_HUMAN (P08727) Keratin, type I cytoskeletal 19 (Cytokeratin-19) (CK-19)|
           (Keratin-19) (K19)
          Length = 400

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +2

Query: 395 THHARSSKSSLNVRNEASSKPPPGCSSHVPEVSGGLGGNGSPVSSA 532
           ++   S+ SS       S +  PG +   P + GG GG G  VSSA
Sbjct: 5   SYRQSSATSSFGGLGGGSVRFGPGVAFRAPSIHGGSGGRGVSVSSA 50

>LOZEN_DROME (Q9W349) Protein lozenge|
          Length = 826

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 18/61 (29%), Positives = 30/61 (49%)
 Frame = +2

Query: 335 TKGSQTKLQ*SFHEGDSEHSTHHARSSKSSLNVRNEASSKPPPGCSSHVPEVSGGLGGNG 514
           T GS +     +H        HHA +     +++++ +  PPP   +  P VS G+GGNG
Sbjct: 537 TNGSSSSAAAYYHSHAHHPHAHHAHA-----HLQHQMALPPPPPPPAAAP-VSVGVGGNG 590

Query: 515 S 517
           +
Sbjct: 591 A 591

>Y479_CLOAB (Q97LS5) UPF0210 protein CAC0479|
          Length = 451

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 22/72 (30%), Positives = 33/72 (45%)
 Frame = +2

Query: 404 ARSSKSSLNVRNEASSKPPPGCSSHVPEVSGGLGGNGSPVSSAELEFKALGDNTVTLSSS 583
           A  + ++L + N+A  K     +SHV    GGL G   PVS  E    A+    + L   
Sbjct: 299 APGTTAALALLNDAVKKGGIMAASHV----GGLSGAFIPVSEDEGMIAAVKSGALNLEKL 354

Query: 584 ESLRTIISCSLD 619
           E++  + S  LD
Sbjct: 355 EAMTCVCSVGLD 366


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,620,827
Number of Sequences: 219361
Number of extensions: 2203998
Number of successful extensions: 7134
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 6432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7111
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 6856295237
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)