ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbasd14n05 |
|---|---|
| Clone Library Name | barley_pub |
>ABA2_LYCES (P93236) Zeaxanthin epoxidase, chloroplast precursor (EC| 1.14.13.90) Length = 669 Score = 54.3 bits (129), Expect = 3e-07 Identities = 34/130 (26%), Positives = 62/130 (47%), Gaps = 5/130 (3%) Frame = -2 Query: 546 LSPQETATGNTSGYRVARPGAIEIASGAMTVGRVPENADVVIPVATVSGVHARLEKKDGS 367 L P + ++R + G+++ +P + +V+P+ VS +HAR+ KDG+ Sbjct: 540 LLPAGNGSSGLEAIVLSRDEDVPCTVGSISHTNIPGKS-IVLPLPQVSEMHARISCKDGA 598 Query: 366 LVVTDMDSTNGTYVNER-----KLVPGFPVAVQPGSLLIFGDIHLAMFRVRKTIVDVAAE 202 VTD+ S +GT+V + + P FP P ++ FG A FRV+ + Sbjct: 599 FFVTDLRSEHGTWVTDNEGRRYRTSPNFPTRFHPSDVIEFGS-DKAAFRVKAMKFPLKTS 657 Query: 201 ASKDDQQEAE 172 K++++ E Sbjct: 658 ERKEEREAVE 667
>ABA2_NICPL (Q40412) Zeaxanthin epoxidase, chloroplast precursor (EC| 1.14.13.90) Length = 663 Score = 54.3 bits (129), Expect = 3e-07 Identities = 33/101 (32%), Positives = 55/101 (54%), Gaps = 5/101 (4%) Frame = -2 Query: 468 GAMTVGRVPENADVVIPVATVSGVHARLEKKDGSLVVTDMDSTNGTYVNER-----KLVP 304 G+++ +P + VVIP+ VS +HAR+ K G+ VTD+ S +GT++ + + P Sbjct: 560 GSVSHANIPGKS-VVIPLPQVSEMHARISYKGGAFFVTDLRSEHGTWITDNEGRRYRASP 618 Query: 303 GFPVAVQPGSLLIFGDIHLAMFRVRKTIVDVAAEASKDDQQ 181 FP P ++ FG A FRV K + A+K+++Q Sbjct: 619 NFPTRFHPSDIIEFGSDKKAAFRV-KVMKFPPKTAAKEERQ 658
>Y4449_ARATH (O23305) FHA domain-containing protein At4g14490| Length = 386 Score = 44.7 bits (104), Expect = 3e-04 Identities = 22/67 (32%), Positives = 36/67 (53%) Frame = -2 Query: 456 VGRVPENADVVIPVATVSGVHARLEKKDGSLVVTDMDSTNGTYVNERKLVPGFPVAVQPG 277 VGR+ ++ I A +S H R+E G+ V+ D+ S+NGT +N L P V + G Sbjct: 30 VGRIVRGNEIAIKDAGISTKHLRIESDSGNWVIQDLGSSNGTLLNSNALDPETSVNLGDG 89 Query: 276 SLLIFGD 256 ++ G+ Sbjct: 90 DVIKLGE 96
>ABA2_PRUAR (O81360) Zeaxanthin epoxidase, chloroplast precursor (EC| 1.14.13.90) (PA-ZE) Length = 661 Score = 43.9 bits (102), Expect = 5e-04 Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 5/72 (6%) Frame = -2 Query: 429 VVIPVATVSGVHARLEKKDGSLVVTDMDSTNGTYV-----NERKLVPGFPVAVQPGSLLI 265 + IP VS +HAR+ KDG+ +TD+ S +GT++ ++ P FP +P + Sbjct: 573 IAIPKPQVSEMHARISYKDGAFYLTDLRSEHGTWIADIEGKRYRVPPNFPARFRPSDAIE 632 Query: 264 FGDIHLAMFRVR 229 G +A FRV+ Sbjct: 633 IGSQKVA-FRVK 643
>ABA2_CAPAN (Q96375) Zeaxanthin epoxidase, chloroplast precursor (EC| 1.14.13.90) (Xanthophyll epoxidase) (Beta-cyclohexenyl epoxidase) Length = 660 Score = 43.5 bits (101), Expect = 6e-04 Identities = 29/101 (28%), Positives = 54/101 (53%), Gaps = 5/101 (4%) Frame = -2 Query: 468 GAMTVGRVPENADVVIPVATVSGVHARLEKKDGSLVVTDMDSTNGTYVNER-----KLVP 304 G+++ +P + VVIP++ VS +HAR+ G+ + T S +GT+ + ++ P Sbjct: 558 GSVSHANIPGKS-VVIPLSQVSDMHARISYNGGAFLGTAFRSDHGTWFIDNEGRRYRVSP 616 Query: 303 GFPVAVQPGSLLIFGDIHLAMFRVRKTIVDVAAEASKDDQQ 181 FP+ +++FG A FR+ K + A+K+D+Q Sbjct: 617 NFPMRFHSSDVIVFGS-DKAAFRI-KAMKFAPKTAAKEDRQ 655
>FRAH_ANASP (P46017) Protein fraH| Length = 289 Score = 41.6 bits (96), Expect = 0.002 Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 2/94 (2%) Frame = -2 Query: 513 SGYRVARPGAIEIASGAMTVGRVPENADV--VIPVATVSGVHARLEKKDGSLVVTDMDST 340 S + P ++ + R+P + DV VS VHA + + + + D+ S+ Sbjct: 191 SDQEIELPPSLSVVHIGKPNDRIPPDVDVSGFANSEIVSRVHADIRLEGDAHYIEDVGSS 250 Query: 339 NGTYVNERKLVPGFPVAVQPGSLLIFGDIHLAMF 238 NGTY+N L+PG ++PG + G L F Sbjct: 251 NGTYINNLPLLPGNRHRLRPGDRISLGKGDLVTF 284
>Y1858_MYCBO (P64898) Hypothetical protein Mb1858| Length = 162 Score = 34.3 bits (77), Expect = 0.37 Identities = 18/46 (39%), Positives = 26/46 (56%) Frame = -2 Query: 459 TVGRVPENADVVIPVATVSGVHARLEKKDGSLVVTDMDSTNGTYVN 322 + GR P++ D+ + TVS HA ++ V D+ S NGTYVN Sbjct: 78 SAGRHPDS-DIFLDDVTVSRRHAEFRLENNEFNVVDVGSLNGTYVN 122
>Y1827_MYCTU (P64897) Hypothetical protein Rv1827/MT1875| Length = 162 Score = 34.3 bits (77), Expect = 0.37 Identities = 18/46 (39%), Positives = 26/46 (56%) Frame = -2 Query: 459 TVGRVPENADVVIPVATVSGVHARLEKKDGSLVVTDMDSTNGTYVN 322 + GR P++ D+ + TVS HA ++ V D+ S NGTYVN Sbjct: 78 SAGRHPDS-DIFLDDVTVSRRHAEFRLENNEFNVVDVGSLNGTYVN 122
>EMBR_MYCTU (P66799) Probable regulatory protein embR| Length = 388 Score = 33.9 bits (76), Expect = 0.48 Identities = 17/56 (30%), Positives = 32/56 (57%) Frame = -2 Query: 477 IASGAMTVGRVPENADVVIPVATVSGVHARLEKKDGSLVVTDMDSTNGTYVNERKL 310 + + A +GR+ +N D+V+ A VS HA + + V+ D+ S+NG +V ++ Sbjct: 303 LQAAATRIGRLHDN-DIVLDSANVSRHHAVIVDTGTNYVINDLRSSNGVHVQHERI 357
>EMBR_MYCBO (P66800) Probable regulatory protein embR| Length = 388 Score = 33.9 bits (76), Expect = 0.48 Identities = 17/56 (30%), Positives = 32/56 (57%) Frame = -2 Query: 477 IASGAMTVGRVPENADVVIPVATVSGVHARLEKKDGSLVVTDMDSTNGTYVNERKL 310 + + A +GR+ +N D+V+ A VS HA + + V+ D+ S+NG +V ++ Sbjct: 303 LQAAATRIGRLHDN-DIVLDSANVSRHHAVIVDTGTNYVINDLRSSNGVHVQHERI 357
>YNVD_SCHPO (O74388) Protein C3H7.13 in chromosome II| Length = 301 Score = 33.5 bits (75), Expect = 0.63 Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 6/68 (8%) Frame = -2 Query: 444 PENADVVIPVATVSGVHARL--EKKDGSLVVTDMDSTNGTYVNERKL----VPGFPVAVQ 283 P +++ +S HA L +K S+ + D+ S+NGT+VNE +L P P + Sbjct: 39 PSPSNLFFNSKVLSRQHAELWLDKDTLSVYIRDVKSSNGTFVNETRLSPENKPSAPCKLN 98 Query: 282 PGSLLIFG 259 G ++ FG Sbjct: 99 SGDIVDFG 106
>VIPR_MELGA (Q91085) Vasoactive intestinal polypeptide receptor precursor| (VIP-R) (VIP receptor) Length = 457 Score = 32.7 bits (73), Expect = 1.1 Identities = 16/49 (32%), Positives = 22/49 (44%) Frame = +1 Query: 193 FAGLGCYIDDSLPNPKHCQVDVTEDEQAPGLDGDWESRHQLPLVNVGAV 339 F G GC + + C ++TED Q G W++ P VGAV Sbjct: 34 FGGGGCIMLEIEEERSQCPAEITEDNQTSGCRRQWDNITCWPEAQVGAV 82
>MUC1_YEAST (P08640) Mucin-like protein 1 precursor| Length = 1367 Score = 31.6 bits (70), Expect = 2.4 Identities = 22/72 (30%), Positives = 33/72 (45%) Frame = +2 Query: 254 MSPKMSRLPGWTATGNPGTSFLSLT*VPLVLSMSVTTRLPSFFSSRACTPETVATGMTTS 433 ++P S+ PG + T +S T VP + SVTT + ++ C+ T + G TTS Sbjct: 898 VTPSSSKYPG-SQTETSVSSTTETTIVPTKTTTSVTTPSTTTITTTVCSTGTNSAGETTS 956 Query: 434 AFSGTRPTVIAP 469 S T P Sbjct: 957 GCSPKTVTTTVP 968
>M3K10_HUMAN (Q02779) Mitogen-activated protein kinase kinase kinase 10 (EC| 2.7.11.25) (Mixed lineage kinase 2) (Protein kinase MST) Length = 954 Score = 30.8 bits (68), Expect = 4.1 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 2/34 (5%) Frame = -3 Query: 506 TASPGPAPSRSHPER*PWD--EFRRTPTLSSPSR 411 T +P P P+ S P PW F RT T+S PSR Sbjct: 882 TFAPRPRPAASRPRLDPWKLVSFGRTLTISPPSR 915
>PF21B_HUMAN (Q96EK2) PHD finger protein 21B| Length = 531 Score = 30.8 bits (68), Expect = 4.1 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%) Frame = +2 Query: 419 GMTTSAFSGTRPTVIAPDAISMAPG--RATR*PDVFPVAVSCGLKNPS 556 G + RP + PD++ +APG R + P F A +KNPS Sbjct: 63 GQGAAVLPQVRPKTLIPDSLPVAPGRDRPPKQPPTFQKATVVSVKNPS 110
>RBL_SYNPX (Q7U5I8) Ribulose bisphosphate carboxylase large chain (EC| 4.1.1.39) (RuBisCO large subunit) Length = 471 Score = 30.4 bits (67), Expect = 5.4 Identities = 26/88 (29%), Positives = 35/88 (39%) Frame = +1 Query: 286 DGDWESRHQLPLVNVGAVGAVHVRNHQAPILLLQPSVHPRNCRDGDDNVGVLRNSSHGHR 465 D DW S +P V A G +HV + A + + GDD+V +HGH Sbjct: 357 DQDWGS---MPGVFAVASGGIHVWHMPALVAIF-----------GDDSVLQFGGGTHGHP 402 Query: 466 SGCDLDGAGPGDAVARCVSSRRLLRAQE 549 G A A+ CV +R R E Sbjct: 403 WGSAAGAAANRVALEACVKARNAGREIE 430
>RBL_SYNPW (P96486) Ribulose bisphosphate carboxylase large chain (EC| 4.1.1.39) (RuBisCO large subunit) Length = 471 Score = 30.4 bits (67), Expect = 5.4 Identities = 26/88 (29%), Positives = 35/88 (39%) Frame = +1 Query: 286 DGDWESRHQLPLVNVGAVGAVHVRNHQAPILLLQPSVHPRNCRDGDDNVGVLRNSSHGHR 465 D DW S +P V A G +HV + A + + GDD+V +HGH Sbjct: 357 DQDWGS---MPGVFAVASGGIHVWHMPALVTIF-----------GDDSVLQFGGGTHGHP 402 Query: 466 SGCDLDGAGPGDAVARCVSSRRLLRAQE 549 G A A+ CV +R R E Sbjct: 403 WGSAAGAAANRVALEACVKARNAGRHLE 430
>YOT2_CAEEL (P34648) Hypothetical protein ZK632.2| Length = 710 Score = 30.0 bits (66), Expect = 7.0 Identities = 16/76 (21%), Positives = 39/76 (51%), Gaps = 7/76 (9%) Frame = -2 Query: 462 MTVGRVPENADVVIPVATVSGVHARLEKKDGSLVVT-------DMDSTNGTYVNERKLVP 304 + +GR+ D+++ ++S H L+ + + T ++ ST+G+ +N+++L P Sbjct: 108 VVIGRIKPGCDLLMEHPSISRYHCILQYGNDKMSKTGKGWHIFELGSTHGSRMNKKRLPP 167 Query: 303 GFPVAVQPGSLLIFGD 256 + + G + FG+ Sbjct: 168 KQYIRTRVGFIFQFGE 183
>PSL1_MOUSE (Q3TD49) Signal peptide peptidase-like 2B (EC 3.4.23.-) (Protein| SPP-like 2B) (Protein SPPL2b) Length = 578 Score = 30.0 bits (66), Expect = 7.0 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 1/56 (1%) Frame = -3 Query: 419 PSRQFLGCTLG-WRRRMGAWWLRTWTAPTAPTLTRGSWCRDSQSPSNPGACSSSVT 255 P CT+ WRR +GA+W + A AP + W +Q P P A SS++ Sbjct: 472 PCTLLTSCTVALWRRELGAFWTGSGFAKDAP---QTPWAA-TQGPVPPKAVGSSLS 523
>VP4_ROTPC (P26193) Outer capsid protein VP4 (Hemagglutinin) (Outer layer| protein VP4) [Contains: Outer capsid protein VP8; Outer capsid protein VP5] Length = 736 Score = 30.0 bits (66), Expect = 7.0 Identities = 30/119 (25%), Positives = 50/119 (42%), Gaps = 8/119 (6%) Frame = -2 Query: 525 TGNTSGYRVARPGAIEIASG--AMTVGRV------PENADVVIPVATVSGVHARLEKKDG 370 +GN + R+A A G + TVG + P N + P+A+ S V LE+K Sbjct: 444 SGNINTRRIASGTGFAYADGHTSQTVGNITFISLIPSNPNYQTPIASSSTVRMDLERK-- 501 Query: 369 SLVVTDMDSTNGTYVNERKLVPGFPVAVQPGSLLIFGDIHLAMFRVRKTIVDVAAEASK 193 + D+ + N L +A P L F ++ ++ + ++ DVAA K Sbjct: 502 ---INDLRNDFNQLANSVALGDILSLATSP---LTFANLLESVPAIASSVKDVAANVMK 554
>NBN_MOUSE (Q9R207) Nibrin (Nijmegen breakage syndrome protein 1 homolog)| (Cell cycle regulatory protein p95) Length = 751 Score = 29.6 bits (65), Expect = 9.1 Identities = 28/103 (27%), Positives = 43/103 (41%), Gaps = 4/103 (3%) Frame = -2 Query: 528 ATGNTSGYRVARPGAIEIASGAMTVGRVPENADVVI---PVATVSGVHARLEKKDGSLVV 358 A G G +E G G + EN + V TV+ L + D + Sbjct: 7 AAGAAPGEPYRLLAGVEYVVGRKNCGILIENDQSISRNHAVLTVNFPVTSLSQTDEIPTL 66 Query: 357 TDMDSTN-GTYVNERKLVPGFPVAVQPGSLLIFGDIHLAMFRV 232 T D++ GT+VNE K+ G ++ G + FG + + FRV Sbjct: 67 TIKDNSKYGTFVNEEKMQTGLSCTLKTGDRVTFG-VFESKFRV 108
>PF21B_MOUSE (Q8C966) PHD finger protein 21B| Length = 487 Score = 29.6 bits (65), Expect = 9.1 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%) Frame = +2 Query: 419 GMTTSAFSGTRPTVIAPDAISMAPG--RATR*PDVFPVAVSCGLKNPS 556 G + RP + PD++ + PG R + P F A +KNPS Sbjct: 63 GQGAAVLPQVRPKTLIPDSLPVTPGRDRPPKQPPTFQKATVVSIKNPS 110
>IPYR_BARBA (P51064) Inorganic pyrophosphatase (EC 3.6.1.1) (Pyrophosphate| phospho-hydrolase) (PPase) Length = 177 Score = 29.6 bits (65), Expect = 9.1 Identities = 26/86 (30%), Positives = 35/86 (40%), Gaps = 23/86 (26%) Frame = -2 Query: 444 PENADVVIPVATVSG-VHARLEKKDGSLVVTDMDSTNGTY-------------------- 328 PE+ +V+I V S V ++KK GSL V ST+ Y Sbjct: 13 PEDVNVIIEVPVDSQPVKYEMDKKSGSLFVDRFISTSMVYPGNYGFIPHTLSEDSDPIDV 72 Query: 327 --VNERKLVPGFPVAVQPGSLLIFGD 256 N R L+PG + V+P LI D Sbjct: 73 LVCNTRPLIPGCVINVRPIGALIMED 98
>YQJF_ECOLI (P42619) Inner membrane protein yqjF| Length = 130 Score = 29.6 bits (65), Expect = 9.1 Identities = 23/66 (34%), Positives = 30/66 (45%) Frame = +1 Query: 43 LTRTTSYFWVAYCVHT*YLDPEAHSLVLKGTLACFLNCTC*HSLGFLLVIFAGLGCYIDD 222 LTRTT+ F + + T +L HS +G + S GFLL+ G G Y D Sbjct: 67 LTRTTALFTAGFTLLTAFL---FHSNFAEGVNSLMFMKNLTISGGFLLLAITGPGAYSID 123 Query: 223 SLPNPK 240 L N K Sbjct: 124 RLLNKK 129 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 99,685,482 Number of Sequences: 219361 Number of extensions: 2163177 Number of successful extensions: 7453 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 7129 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 7449 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 6912958834 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
