ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd15c05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1DNM3B_MOUSE (O88509) DNA (cytosine-5)-methyltransferase 3B (EC 2... 39 0.014
2DNM3B_HUMAN (Q9UBC3) DNA (cytosine-5)-methyltransferase 3B (EC 2... 37 0.070
3DNM3A_MOUSE (O88508) DNA (cytosine-5)-methyltransferase 3A (EC 2... 36 0.091
4MTF1_FUSNU (P34906) Modification methylase FnuDI (EC 2.1.1.37) (... 36 0.091
5DNMT2_HUMAN (O14717) DNA (cytosine-5)-methyltransferase-like pro... 36 0.091
6DNM3A_HUMAN (Q9Y6K1) DNA (cytosine-5)-methyltransferase 3A (EC 2... 36 0.091
7MTBR_BPRH1 (P09915) Modification methylase Rho11sI (EC 2.1.1.37)... 36 0.12
8MTH3_HAEAE (P20589) Modification methylase HaeIII (EC 2.1.1.37) ... 35 0.20
9DNMT2_MOUSE (O55055) DNA (cytosine-5)-methyltransferase-like pro... 35 0.26
10RPOC1_LACSA (Q56P12) DNA-directed RNA polymerase beta' chain (EC... 35 0.26
11MTBS_BPSPR (P00476) Modification methylase SPRI (EC 2.1.1.37) (C... 34 0.35
12PMT1_SCHPO (P40999) DNA methyltransferase homolog pmt1 (SpIM.Spo... 34 0.45
13RPOC1_PSINU (Q8WI25) DNA-directed RNA polymerase beta' chain (EC... 33 0.77
14RPOC_BACFR (Q64NJ8) DNA-directed RNA polymerase beta' chain (EC ... 33 1.0
15RPOC_BACFN (Q5L898) DNA-directed RNA polymerase beta' chain (EC ... 33 1.0
16RPOC_PELCD (Q3A6Q3) DNA-directed RNA polymerase beta' chain (EC ... 32 1.3
17RPOC_PSEHT (Q3ILP8) DNA-directed RNA polymerase beta' chain (EC ... 32 2.2
18RPOC_PORGI (Q7MX26) DNA-directed RNA polymerase beta' chain (EC ... 32 2.2
19PPNK1_ANAVT (Q3MBU3) Probable inorganic polyphosphate/ATP-NAD ki... 32 2.2
20PPNK1_ANASP (Q8YN19) Probable inorganic polyphosphate/ATP-NAD ki... 32 2.2
21RPOC1_SILLA (Q589B9) DNA-directed RNA polymerase beta' chain (EC... 32 2.2
22RPOC_GLUOX (Q5FTX8) DNA-directed RNA polymerase beta' chain (EC ... 32 2.2
23EZRA_LACLA (Q9CDR6) Septation ring formation regulator ezrA 32 2.2
24RPOC_PORCN (O33431) DNA-directed RNA polymerase beta' chain (EC ... 31 2.9
25RPOC1_ANTFO (Q85CL6) DNA-directed RNA polymerase beta' chain (EC... 31 2.9
26ZN614_HUMAN (Q8N883) Zinc finger protein 614 31 2.9
27RPOC_CARHZ (Q3A9Q8) DNA-directed RNA polymerase beta' chain (EC ... 31 2.9
28RPOC_CORJK (Q4JT33) DNA-directed RNA polymerase beta' chain (EC ... 31 2.9
29MTBB_BPSPB (P09389) Modification methylase SPBetaI (EC 2.1.1.37)... 31 3.8
30MTAA_SYNP2 (P34882) Modification methylase AquI alpha subunit (E... 31 3.8
31MTBP_BPPHT (P68586) Modification methylase Phi3TI (EC 2.1.1.37) ... 31 3.8
32MTBP_BACSU (P68585) Phi-3T prophage-derived modification methyla... 31 3.8
33RPOC_CHLTE (Q8KG14) DNA-directed RNA polymerase beta' chain (EC ... 31 3.8
34RPOC_CHLCH (Q3ATP4) DNA-directed RNA polymerase beta' chain (EC ... 31 3.8
35RPOC_SHEVI (Q9KW13) DNA-directed RNA polymerase beta' chain (EC ... 31 3.8
36PPNK1_SYNY3 (P74430) Probable inorganic polyphosphate/ATP-NAD ki... 30 5.0
37RPOC1_SOYBN (Q8HVY4) DNA-directed RNA polymerase beta' chain (EC... 30 5.0
38RPOC1_LOTJA (Q9BBS8) DNA-directed RNA polymerase beta' chain (EC... 30 5.0
39MTC1_HERAU (P25263) Modification methylase HgiCI (EC 2.1.1.37) (... 30 5.0
40ACH1_KLULA (Q6CNR2) Acetyl-CoA hydrolase (EC 3.1.2.1) (Acetyl-Co... 30 5.0
41RPOC_NEIMB (Q9K1J1) DNA-directed RNA polymerase beta' chain (EC ... 30 5.0
42RPOC_NEIMA (Q9JX03) DNA-directed RNA polymerase beta' chain (EC ... 30 5.0
43RPOC_NEIG1 (Q5F5R6) DNA-directed RNA polymerase beta' chain (EC ... 30 5.0
44RPOC1_ARATH (P56763) DNA-directed RNA polymerase beta' chain (EC... 30 5.0
45RPOC1_SINAL (P46819) DNA-directed RNA polymerase beta' chain (EC... 30 5.0
46RPOC_CORGL (Q8NT25) DNA-directed RNA polymerase beta' chain (EC ... 30 5.0
47RPOC_COREF (Q8FS96) DNA-directed RNA polymerase beta' chain (EC ... 30 5.0
48RPOC_DESVH (Q727C6) DNA-directed RNA polymerase beta' chain (EC ... 30 6.5
49RPOC1_PANGI (Q68S15) DNA-directed RNA polymerase beta' chain (EC... 30 6.5
50RPOC1_NICTO (Q33C47) DNA-directed RNA polymerase beta' chain (EC... 30 6.5
51RPOC1_NICSY (Q3C1G8) DNA-directed RNA polymerase beta' chain (EC... 30 6.5
52RPOC1_ATRBE (Q8S8Y0) DNA-directed RNA polymerase beta' chain (EC... 30 6.5
53RPOC1_ACOGR (Q5QA71) DNA-directed RNA polymerase beta' chain (EC... 30 6.5
54RPOC1_ACOCL (Q3V543) DNA-directed RNA polymerase gamma chain (EC... 30 6.5
55RPOC1_SOLTU (Q2VEI5) DNA-directed RNA polymerase beta' chain (EC... 30 6.5
56RPOC_DESDG (Q30X04) DNA-directed RNA polymerase beta' chain (EC ... 30 6.5
57RPOC1_TOBAC (P12116) DNA-directed RNA polymerase beta' chain (EC... 30 6.5
58RPOC1_CUCSA (Q4VZP2) DNA-directed RNA polymerase beta' chain (EC... 30 6.5
59PUR7_ARCFU (O28996) Putative phosphoribosylaminoimidazole-succin... 30 6.5
60CAN1_RABIT (P06815) Calpain-1 catalytic subunit (EC 3.4.22.52) (... 30 6.5
61RPOC1_SPIOL (P11705) DNA-directed RNA polymerase beta' chain (EC... 30 8.5
62NGAP_HUMAN (Q9UJF2) Ras GTPase-activating protein nGAP (RAS prot... 30 8.5
63RPOC1_AMBTC (P60287) DNA-directed RNA polymerase beta' chain (EC... 30 8.5
64RPOC_PSEPU (P19176) DNA-directed RNA polymerase beta' chain (EC ... 30 8.5
65RPOC1_CALFE (Q7YJX9) DNA-directed RNA polymerase beta' chain (EC... 30 8.5 
>DNM3B_MOUSE (O88509) DNA (cytosine-5)-methyltransferase 3B (EC 2.1.1.37)|
           (Dnmt3b) (DNA methyltransferase MmuIIIB) (DNA MTase
           MmuIIIB) (M.MmuIIIB)
          Length = 859

 Score = 38.9 bits (89), Expect = 0.014
 Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 4/120 (3%)
 Frame = -1

Query: 524 LRVLSIYSGVGGAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAKTEQSGVLRQLPGIW 345
           +RVLS++ G+    + L  LGI ++  ++ E    +  +        +  G ++ +  + 
Sbjct: 581 IRVLSLFDGIATGYLVLKELGIKVEKYIASEVCAESIAV-----GTVKHEGQIKYVNDVR 635

Query: 344 KLKTDVLEDLFKEFGGFDLVVGGNYDSCRGGTTVN-AAMGM---DSKKYFEFVRVLNRVR 177
           K+    +E    E+G FDLV+GG+   C   + VN A  G+     + +FEF  +LN  R
Sbjct: 636 KITKKNIE----EWGPFDLVIGGS--PCNDLSNVNPARKGLYEGTGRLFFEFYHLLNYTR 689
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>DNM3B_HUMAN (Q9UBC3) DNA (cytosine-5)-methyltransferase 3B (EC 2.1.1.37)|
           (Dnmt3b) (DNA methyltransferase HsaIIIB) (DNA MTase
           HsaIIIB) (M.HsaIIIB)
          Length = 853

 Score = 36.6 bits (83), Expect = 0.070
 Identities = 31/120 (25%), Positives = 58/120 (48%), Gaps = 4/120 (3%)
 Frame = -1

Query: 524 LRVLSIYSGVGGAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAKTEQSGVLRQLPGIW 345
           +RVLS++ G+    + L  LGI +   V+ E  + +  +        +  G ++ +  + 
Sbjct: 575 IRVLSLFDGIATGYLVLKELGIKVGKYVASEVCEESIAV-----GTVKHEGNIKYVNDV- 628

Query: 344 KLKTDVLEDLFKEFGGFDLVVGGNYDSCRGGTTVN-AAMGM---DSKKYFEFVRVLNRVR 177
               ++ +   +E+G FDLV+GG+   C   + VN A  G+     + +FEF  +LN  R
Sbjct: 629 ---RNITKKNIEEWGPFDLVIGGS--PCNDLSNVNPARKGLYEGTGRLFFEFYHLLNYSR 683
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>DNM3A_MOUSE (O88508) DNA (cytosine-5)-methyltransferase 3A (EC 2.1.1.37)|
           (Dnmt3a) (DNA methyltransferase MmuIIIA) (DNA MTase
           MmuIIIA) (M.MmuIIIA)
          Length = 908

 Score = 36.2 bits (82), Expect = 0.091
 Identities = 34/121 (28%), Positives = 58/121 (47%), Gaps = 5/121 (4%)
 Frame = -1

Query: 524 LRVLSIYSGVGGAEVALHRLGIPLKCVVSIEESDVNRKI-LKRWWAKTEQSGVLRQLPGI 348
           +RVLS++ G+    + L  LGI +   ++ E  + +  + + R   K    G +R     
Sbjct: 630 IRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRHQGKIMYVGDVRS---- 685

Query: 347 WKLKTDVLEDLFKEFGGFDLVVGGNYDSCRGGTTVN-AAMGM---DSKKYFEFVRVLNRV 180
                 V +   +E+G FDLV+GG+   C   + VN A  G+     + +FEF R+L+  
Sbjct: 686 ------VTQKHIQEWGPFDLVIGGS--PCNDLSIVNPARKGLYEGTGRLFFEFYRLLHDA 737

Query: 179 R 177
           R
Sbjct: 738 R 738
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>MTF1_FUSNU (P34906) Modification methylase FnuDI (EC 2.1.1.37)|
           (Cytosine-specific methyltransferase FnuDI) (M.FnuDI)
          Length = 344

 Score = 36.2 bits (82), Expect = 0.091
 Identities = 27/119 (22%), Positives = 56/119 (47%), Gaps = 3/119 (2%)
 Frame = -1

Query: 524 LRVLSIYSGVGGAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAKTEQSGVLRQLPGIW 345
           +++LS++SG GG ++   R G     ++   E D      K  W   E++   +      
Sbjct: 1   MKLLSLFSGAGGLDLGFERAGFE---IIVANEYD------KTIWETYEKNHKAK------ 45

Query: 344 KLKTDVLEDLFKEFGGFDLVVGGNYDSCRGGTTVNAAMGMD---SKKYFEFVRVLNRVR 177
            +K D+ E L +E    D ++GG    C+  +   +  G++    K ++E++R+L  ++
Sbjct: 46  LIKKDIREILSEELPKSDGIIGG--PPCQSWSEAGSLRGINDPRGKLFYEYIRILKDIQ 102
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>DNMT2_HUMAN (O14717) DNA (cytosine-5)-methyltransferase-like protein 2 (Dnmt2)|
           (DNA methyltransferase homolog HsaIIP) (DNA MTase
           homolog HsaIIP) (M.HsaIIP) (PuMet)
          Length = 391

 Score = 36.2 bits (82), Expect = 0.091
 Identities = 33/126 (26%), Positives = 58/126 (46%)
 Frame = -1

Query: 524 LRVLSIYSGVGGAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAKTEQSGVLRQLPGIW 345
           LRVL +YSGVGG   AL    IP + V +I+ + V  ++ K  +  T+   + + + GI 
Sbjct: 4   LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQL--LAKTIEGIT 61

Query: 344 KLKTDVLEDLFKEFGGFDLVVGGNYDSCRGGTTVNAAMGMDSKKYFEFVRVLNRVRSMHA 165
             + D L         FD+++      C+  T +     M   +   F+ +L+ +  +  
Sbjct: 62  LEEFDRL--------SFDMILMS--PPCQPFTRIGRQGDMTDSRTNSFLHILDILPRLQK 111

Query: 164 LFK*LL 147
           L K +L
Sbjct: 112 LPKYIL 117
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>DNM3A_HUMAN (Q9Y6K1) DNA (cytosine-5)-methyltransferase 3A (EC 2.1.1.37)|
           (Dnmt3a) (DNA methyltransferase HsaIIIA) (DNA MTase
           HsaIIIA) (M.HsaIIIA)
          Length = 909

 Score = 36.2 bits (82), Expect = 0.091
 Identities = 34/121 (28%), Positives = 58/121 (47%), Gaps = 5/121 (4%)
 Frame = -1

Query: 524 LRVLSIYSGVGGAEVALHRLGIPLKCVVSIEESDVNRKI-LKRWWAKTEQSGVLRQLPGI 348
           +RVLS++ G+    + L  LGI +   ++ E  + +  + + R   K    G +R     
Sbjct: 631 IRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRHQGKIMYVGDVRS---- 686

Query: 347 WKLKTDVLEDLFKEFGGFDLVVGGNYDSCRGGTTVN-AAMGM---DSKKYFEFVRVLNRV 180
                 V +   +E+G FDLV+GG+   C   + VN A  G+     + +FEF R+L+  
Sbjct: 687 ------VTQKHIQEWGPFDLVIGGS--PCNDLSIVNPARKGLYEGTGRLFFEFYRLLHDA 738

Query: 179 R 177
           R
Sbjct: 739 R 739
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>MTBR_BPRH1 (P09915) Modification methylase Rho11sI (EC 2.1.1.37)|
           (Cytosine-specific methyltransferase Rho11sI) (Bsu P11s)
           (M.Rho11sI)
          Length = 503

 Score = 35.8 bits (81), Expect = 0.12
 Identities = 30/126 (23%), Positives = 59/126 (46%), Gaps = 3/126 (2%)
 Frame = -1

Query: 524 LRVLSIYSGVGGAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAKTEQSGVLRQLPGIW 345
           LRV+S++SG+G  E AL  +G+  + V     S++++  +K + A       L       
Sbjct: 4   LRVMSLFSGIGAFEAALRNIGVEYELV---GFSEIDKYAIKSYCAIHNADEQLN------ 54

Query: 344 KLKTDVLEDLFKEFGGFDLVVGGNYDSCRGGTTVNAAMGMDSKK---YFEFVRVLNRVRS 174
               DV +   K+   FDL+VGG+   C+  +      G +  +   +F+++  L   + 
Sbjct: 55  --FGDVSKIDKKKLPEFDLLVGGS--PCQSFSVAGYRKGFEDTRGTLFFQYIDTLKEKQP 110

Query: 173 MHALFK 156
            + +F+
Sbjct: 111 RYFVFE 116
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>MTH3_HAEAE (P20589) Modification methylase HaeIII (EC 2.1.1.37)|
           (Cytosine-specific methyltransferase HaeIII) (M.HaeIII)
          Length = 330

 Score = 35.0 bits (79), Expect = 0.20
 Identities = 28/124 (22%), Positives = 58/124 (46%), Gaps = 3/124 (2%)
 Frame = -1

Query: 524 LRVLSIYSGVGGAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAKTEQSGVLRQLPGIW 345
           + ++S++SG GG ++   + G  + C    ++S         W  KT +S    +L    
Sbjct: 1   MNLISLFSGAGGLDLGFQKAGFRIICANEYDKS--------IW--KTYESNHSAKL---- 46

Query: 344 KLKTDVLEDLFKEFGGFDLVVGGNYDSCRGGTTVNAAMGMD---SKKYFEFVRVLNRVRS 174
            +K D+ +    EF   D ++GG    C+  +   +  G+D    K ++E++R+L + + 
Sbjct: 47  -IKGDISKISSDEFPKCDGIIGG--PPCQSWSEGGSLRGIDDPRGKLFYEYIRILKQKKP 103

Query: 173 MHAL 162
           +  L
Sbjct: 104 IFFL 107
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>DNMT2_MOUSE (O55055) DNA (cytosine-5)-methyltransferase-like protein 2 (Dnmt2)|
           (DNA methyltransferase homolog MmuIIP) (DNA MTase
           homolog MmuIIP) (M.MmuIIP) (Met-2)
          Length = 415

 Score = 34.7 bits (78), Expect = 0.26
 Identities = 17/41 (41%), Positives = 24/41 (58%)
 Frame = -1

Query: 524 LRVLSIYSGVGGAEVALHRLGIPLKCVVSIEESDVNRKILK 402
           LRVL +YSG+GG   AL    IP   V +I+ + V  ++ K
Sbjct: 4   LRVLELYSGIGGMHHALRESHIPAHVVAAIDVNTVANEVYK 44
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>RPOC1_LACSA (Q56P12) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase beta' subunit) (RNA
           polymerase beta' subunit)
          Length = 689

 Score = 34.7 bits (78), Expect = 0.26
 Identities = 18/70 (25%), Positives = 40/70 (57%), Gaps = 7/70 (10%)
 Frame = -1

Query: 506 YSG----VGGAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAK---TEQSGVLRQLPGI 348
           YSG    V G  ++LHR G+P +  + + ++ V R ++++  A      +S + ++ P +
Sbjct: 378 YSGRSVIVVGPSLSLHRCGLPREIAIELFQAFVIRDLIRKHLASNIGVAKSQIRKKKPIV 437

Query: 347 WKLKTDVLED 318
           W++  ++L+D
Sbjct: 438 WEILQEILDD 447
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>MTBS_BPSPR (P00476) Modification methylase SPRI (EC 2.1.1.37)|
           (Cytosine-specific methyltransferase SPRI) (M.SPRI)
          Length = 439

 Score = 34.3 bits (77), Expect = 0.35
 Identities = 31/126 (24%), Positives = 58/126 (46%), Gaps = 3/126 (2%)
 Frame = -1

Query: 524 LRVLSIYSGVGGAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAKTEQSGVLRQLPGIW 345
           LRV+S++SG+G  E AL  +G+  + V     S++++  +K + A       L       
Sbjct: 4   LRVMSLFSGIGAFEAALRNIGVGYELV---GFSEIDKYAVKSFCAIHNVDEQLN------ 54

Query: 344 KLKTDVLEDLFKEFGGFDLVVGGNYDSCRGGTTVNAAMGMDSKK---YFEFVRVLNRVRS 174
               DV +   K+   FDL+VGG+   C+  +      G +  +   +F++V  L   + 
Sbjct: 55  --FGDVSKIDKKKLPEFDLLVGGS--PCQSFSVAGHRKGFEDTRGTLFFQYVETLKEKQP 110

Query: 173 MHALFK 156
              +F+
Sbjct: 111 KFFVFE 116
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>PMT1_SCHPO (P40999) DNA methyltransferase homolog pmt1 (SpIM.SpoI) (M.SpomI)|
          Length = 330

 Score = 33.9 bits (76), Expect = 0.45
 Identities = 29/113 (25%), Positives = 46/113 (40%)
 Frame = -1

Query: 524 LRVLSIYSGVGGAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAKTEQSGVLRQLPGIW 345
           LRVL +YSG+GG   AL+   IP   V +I   D+N           + + +     G  
Sbjct: 7   LRVLELYSGIGGMHYALNLANIPADIVCAI---DIN----------PQANEIYNLNHGKL 53

Query: 344 KLKTDVLEDLFKEFGGFDLVVGGNYDSCRGGTTVNAAMGMDSKKYFEFVRVLN 186
               D+     K+F  FD  +     SC+  T +     +   +   F+ +LN
Sbjct: 54  AKHMDISTLTAKDFDAFDCKLWTMSPSCQPFTRIGNRKDILDPRSQAFLNILN 106
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>RPOC1_PSINU (Q8WI25) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase beta' subunit) (RNA
           polymerase beta' subunit)
          Length = 674

 Score = 33.1 bits (74), Expect = 0.77
 Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 7/69 (10%)
 Frame = -1

Query: 506 YSG----VGGAEVALHRLGIPLKCVVSIEESDVNRKILKRWWA---KTEQSGVLRQLPGI 348
           YSG    V G  + LHR G+P +  + + ++ V R ++ R+ A   +  ++ +  + P I
Sbjct: 383 YSGRSVIVVGPSLPLHRCGLPREMAIELFQAFVIRGLIGRYLAQNLRDAKNMIQNKEPII 442

Query: 347 WKLKTDVLE 321
           WK+  DV++
Sbjct: 443 WKILRDVMQ 451
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>RPOC_BACFR (Q64NJ8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
           beta' subunit) (Transcriptase beta' chain) (RNA
           polymerase beta' subunit)
          Length = 1427

 Score = 32.7 bits (73), Expect = 1.0
 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
 Frame = -1

Query: 497 VGGAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAKTEQSG---VLRQLPGIWKLKTDV 327
           V G E+ +H  GIP      + +  + RK+++R   KT +S    V R+ P IW    D+
Sbjct: 368 VVGPELRMHECGIPKLMAAELYKPFIIRKLIERGIVKTVKSAKKIVDRKEPVIW----DI 423

Query: 326 LEDLFK 309
           LE + K
Sbjct: 424 LEHVMK 429
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>RPOC_BACFN (Q5L898) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
           beta' subunit) (Transcriptase beta' chain) (RNA
           polymerase beta' subunit)
          Length = 1427

 Score = 32.7 bits (73), Expect = 1.0
 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
 Frame = -1

Query: 497 VGGAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAKTEQSG---VLRQLPGIWKLKTDV 327
           V G E+ +H  GIP      + +  + RK+++R   KT +S    V R+ P IW    D+
Sbjct: 368 VVGPELRMHECGIPKLMAAELYKPFIIRKLIERGIVKTVKSAKKIVDRKEPVIW----DI 423

Query: 326 LEDLFK 309
           LE + K
Sbjct: 424 LEHVMK 429
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>RPOC_PELCD (Q3A6Q3) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
           beta' subunit) (Transcriptase beta' chain) (RNA
           polymerase beta' subunit)
          Length = 1396

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
 Frame = -1

Query: 506 YSG----VGGAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAKTEQSG---VLRQLPGI 348
           YSG    V G E+ LH+ G+P K  + + +  +  K+ +R +  T +S    V ++   +
Sbjct: 349 YSGRSVIVVGPELKLHQCGLPKKMALELFKPFIYNKLEERGFCTTIKSAKKMVEKEKSEV 408

Query: 347 WKLKTDVLEDLFKE 306
           W    DVLE++ KE
Sbjct: 409 W----DVLEEVIKE 418
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>RPOC_PSEHT (Q3ILP8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
           beta' subunit) (Transcriptase beta' chain) (RNA
           polymerase beta' subunit)
          Length = 1390

 Score = 31.6 bits (70), Expect = 2.2
 Identities = 18/65 (27%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
 Frame = -1

Query: 491 GAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAKTEQSG---VLRQLPGIWKLKTDVLE 321
           G  + LH+ G+P K  + + +  +  K+ +R  A T ++    V R++P +W    DVL+
Sbjct: 358 GPTLKLHQCGLPKKMALELFKPFIYGKLERRGMATTIKAAKKMVEREMPEVW----DVLD 413

Query: 320 DLFKE 306
           ++ +E
Sbjct: 414 EVIRE 418
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>RPOC_PORGI (Q7MX26) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
           beta' subunit) (Transcriptase beta' chain) (RNA
           polymerase beta' subunit)
          Length = 1433

 Score = 31.6 bits (70), Expect = 2.2
 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
 Frame = -1

Query: 497 VGGAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAKTEQSG---VLRQLPGIWKLKTDV 327
           V G E+ +H  G+P      + +  + RK+++R   KT +S    V R+ P IW    D+
Sbjct: 369 VVGPELKMHECGLPKDMAAELYKPFIIRKLIERGIVKTVKSAKKIVDRKEPVIW----DI 424

Query: 326 LEDLFK 309
           LE + K
Sbjct: 425 LEYVMK 430
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>PPNK1_ANAVT (Q3MBU3) Probable inorganic polyphosphate/ATP-NAD kinase 1 (EC|
           2.7.1.23) (Poly(P)/ATP NAD kinase 1)
          Length = 305

 Score = 31.6 bits (70), Expect = 2.2
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
 Frame = -1

Query: 662 ILGY-----PPNHTSLFTLNPPDRIAAMKYAFQTDTIAYVLSVLKDIYPNGLRVLSIYSG 498
           ILGY     P  HT +  L PP   + MK+A        VL+  + + P G+ +L+I +G
Sbjct: 42  ILGYSNPESPVCHTPIDGLTPPGFDSEMKFAIVLGGDGTVLAASRQVAPCGIPILAINTG 101
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>PPNK1_ANASP (Q8YN19) Probable inorganic polyphosphate/ATP-NAD kinase 1 (EC|
           2.7.1.23) (Poly(P)/ATP NAD kinase 1)
          Length = 305

 Score = 31.6 bits (70), Expect = 2.2
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
 Frame = -1

Query: 662 ILGY-----PPNHTSLFTLNPPDRIAAMKYAFQTDTIAYVLSVLKDIYPNGLRVLSIYSG 498
           ILGY     P  HT +  L PP   + MK+A        VL+  + + P G+ +L+I +G
Sbjct: 42  ILGYSNPESPVCHTPIDGLTPPGFDSEMKFAIVLGGDGTVLAASRQVAPCGIPILAINTG 101
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>RPOC1_SILLA (Q589B9) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase beta' subunit) (RNA
           polymerase beta' subunit)
          Length = 687

 Score = 31.6 bits (70), Expect = 2.2
 Identities = 18/69 (26%), Positives = 38/69 (55%), Gaps = 7/69 (10%)
 Frame = -1

Query: 506 YSG----VGGAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAK---TEQSGVLRQLPGI 348
           YSG    V G  ++LHR G+P +  + + ++ + R ++++  A      +S +  + P I
Sbjct: 381 YSGRSVIVVGPSLSLHRCGLPREIAIELFQTFIIRGLIRQHLASNIGVAKSKIREKEPII 440

Query: 347 WKLKTDVLE 321
           WK+  +V++
Sbjct: 441 WKILQEVMQ 449
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>RPOC_GLUOX (Q5FTX8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
           beta' subunit) (Transcriptase beta' chain) (RNA
           polymerase beta' subunit)
          Length = 1439

 Score = 31.6 bits (70), Expect = 2.2
 Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
 Frame = -1

Query: 506 YSG----VGGAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAKTEQSG---VLRQLPGI 348
           YSG    V G E+ LH+ G+P K  + + +  +  K+ K   A T ++    V ++ P +
Sbjct: 393 YSGRSVIVVGPELKLHQCGLPKKMALELFKPFIYSKLEKYGHATTIKAAKRMVEKERPEV 452

Query: 347 WKLKTDVLEDLFKE 306
           W    D+LE++ +E
Sbjct: 453 W----DILEEVIRE 462
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>EZRA_LACLA (Q9CDR6) Septation ring formation regulator ezrA|
          Length = 576

 Score = 31.6 bits (70), Expect = 2.2
 Identities = 22/99 (22%), Positives = 44/99 (44%)
 Frame = -1

Query: 596 MKYAFQTDTIAYVLSVLKDIYPNGLRVLSIYSGVGGAEVALHRLGIPLKCVVSIEESDVN 417
           M Y+  +  +  V++ L+DI  N +++    +G+   E A   +          E  D  
Sbjct: 380 MPYSILSRRVNSVVNALEDIEKNQIKISDTLTGLRDEERAAQEIA---------ERFDSE 430

Query: 416 RKILKRWWAKTEQSGVLRQLPGIWKLKTDVLEDLFKEFG 300
            + +KR+  K    G+ +    ++    D +++LFKE G
Sbjct: 431 LRTIKRYVEKCNLPGLPKDYLDLFFTTGDRVQNLFKELG 469
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>RPOC_PORCN (O33431) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
           beta' subunit) (Transcriptase beta' chain) (RNA
           polymerase beta' subunit) (Fragment)
          Length = 1159

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
 Frame = -1

Query: 506 YSG----VGGAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAKTEQSG---VLRQLPGI 348
           YSG    V G E  +H  G+P      + +  V RK+L+R   KT +S    V ++ P +
Sbjct: 287 YSGRSVIVVGPEPKMHECGLPKYMAAELYKPFVIRKLLERGIVKTVKSARRIVDKKGPEV 346

Query: 347 WKLKTDVLEDLFK 309
           W    D+LE + K
Sbjct: 347 W----DILEHVIK 355
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>RPOC1_ANTFO (Q85CL6) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase beta' subunit) (RNA
           polymerase beta' subunit)
          Length = 681

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 7/69 (10%)
 Frame = -1

Query: 506 YSG----VGGAEVALHRLGIPLKCVVSIEESDVNRKILKRWWA---KTEQSGVLRQLPGI 348
           YSG    V G  + LH  G+P +  V + ++ V R ++ R+ A   +  +S +  + P I
Sbjct: 378 YSGRSVIVAGPYLPLHECGLPKEMAVELFQAFVIRGLIGRYLAPNLRAAKSMIQDKEPII 437

Query: 347 WKLKTDVLE 321
           WK+  +V++
Sbjct: 438 WKILKEVIQ 446
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>ZN614_HUMAN (Q8N883) Zinc finger protein 614|
          Length = 585

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = +3

Query: 102 SLVEDRW*RTHNYARQQLLKKCVHTPHSI-KNTNELKIFFGVHPHSCIHCRPTSTR 266
           +L+  +  RTH   R     KC+HT   + K+    KI     PH+CI C  T  R
Sbjct: 164 TLLHGKHERTHTKTRFSENAKCIHTKFQVFKHQRTQKI---EKPHACIECEQTFLR 216
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>RPOC_CARHZ (Q3A9Q8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
           beta' subunit) (Transcriptase beta' chain) (RNA
           polymerase beta' subunit)
          Length = 1152

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
 Frame = -1

Query: 506 YSG----VGGAEVALHRLGIPLKCVVSIEESDVNRKILKRWWA---KTEQSGVLRQLPGI 348
           YSG    V G E+ LH+ G+P +  + + +  V +K++    A   K+ +  V R  P +
Sbjct: 338 YSGRSVIVVGPELKLHQCGLPKEMALELFKPFVMKKLVADGIAHNIKSAKRMVERVKPEV 397

Query: 347 WKLKTDVLEDLFKE 306
           W    DVLE++ KE
Sbjct: 398 W----DVLEEVIKE 407
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>RPOC_CORJK (Q4JT33) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
           beta' subunit) (Transcriptase beta' chain) (RNA
           polymerase beta' subunit)
          Length = 1323

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 21/74 (28%), Positives = 40/74 (54%), Gaps = 7/74 (9%)
 Frame = -1

Query: 506 YSG----VGGAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAKTEQSG---VLRQLPGI 348
           YSG    + G ++ LH+ G+P    + + +  V ++++++ +A+  +S    V RQ P +
Sbjct: 424 YSGRSVIIVGPQLKLHQCGLPKLMALELFKPFVMKRLVEKSYAQNIKSAKRMVERQRPEV 483

Query: 347 WKLKTDVLEDLFKE 306
           W    DVLE+   E
Sbjct: 484 W----DVLEEAIAE 493
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>MTBB_BPSPB (P09389) Modification methylase SPBetaI (EC 2.1.1.37)|
           (Cytosine-specific methyltransferase SPBetaI)
           (M.SPBetaI) (Fragments)
          Length = 257

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 31/105 (29%), Positives = 48/105 (45%)
 Frame = -1

Query: 524 LRVLSIYSGVGGAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAKTEQSGVLRQLPGIW 345
           LRV+S++SG+G  E AL  +G+  +    I  S++++  +K + A    S  L  +  I 
Sbjct: 4   LRVMSLFSGIGAFEAALRNIGVDYEL---IGFSEIDKYAIKSYCAIHNVSETL-NVGDIS 59

Query: 344 KLKTDVLEDLFKEFGGFDLVVGGNYDSCRGGTTVNAAMGMDSKKY 210
           K K D           FDL+  G    C    T + A G D  +Y
Sbjct: 60  KAKKD-------NIPYFDLLTSG--FPC---PTFSVAGGRDGMEY 92
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>MTAA_SYNP2 (P34882) Modification methylase AquI alpha subunit (EC 2.1.1.37)|
           (Cytosine-specific methyltransferase AquI alpha subunit)
           (M.AquI alpha subunit) (M.AquiA)
          Length = 248

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 30/115 (26%), Positives = 49/115 (42%), Gaps = 4/115 (3%)
 Frame = -1

Query: 521 RVLSIYSGVGGAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAKTEQSGVLRQLPGIWK 342
           +++S++SG GG ++  H  G      V  + S  N   L         + V+     I  
Sbjct: 4   KLISLFSGAGGMDIGFHAAGFSTAVAVEQDPSCCNTLRL-----NMPDTPVIE--GDITS 56

Query: 341 LKTDVLEDLFKEFG-GFDLVVGGNYDSCRGGTTVNAAMGMDSKK---YFEFVRVL 189
           + T V+ +  K      DLV+GG    C+  +     MGMD  +     EF+RV+
Sbjct: 57  ITTQVILEAAKVNPLEIDLVIGG--PPCQSFSLAGKRMGMDDPRGMLVLEFLRVV 109
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>MTBP_BPPHT (P68586) Modification methylase Phi3TI (EC 2.1.1.37)|
           (Cytosine-specific methyltransferase Phi3TI) (M.Phi3TI)
          Length = 443

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 31/105 (29%), Positives = 48/105 (45%)
 Frame = -1

Query: 524 LRVLSIYSGVGGAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAKTEQSGVLRQLPGIW 345
           LRV+S++SG+G  E AL  +G+  +    I  S++++  +K + A    S  L  +  I 
Sbjct: 4   LRVMSLFSGIGAFEAALRNIGVDYEL---IGFSEIDKYAIKSYCAIHNVSETL-NVGDIS 59

Query: 344 KLKTDVLEDLFKEFGGFDLVVGGNYDSCRGGTTVNAAMGMDSKKY 210
           K K D           FDL+  G    C    T + A G D  +Y
Sbjct: 60  KAKKD-------NIPYFDLLTSG--FPC---PTFSVAGGRDGMEY 92
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>MTBP_BACSU (P68585) Phi-3T prophage-derived modification methylase Phi3TI (EC|
           2.1.1.37) (Cytosine-specific methyltransferase Phi3TI)
           (M.Phi3TI)
          Length = 443

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 31/105 (29%), Positives = 48/105 (45%)
 Frame = -1

Query: 524 LRVLSIYSGVGGAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAKTEQSGVLRQLPGIW 345
           LRV+S++SG+G  E AL  +G+  +    I  S++++  +K + A    S  L  +  I 
Sbjct: 4   LRVMSLFSGIGAFEAALRNIGVDYEL---IGFSEIDKYAIKSYCAIHNVSETL-NVGDIS 59

Query: 344 KLKTDVLEDLFKEFGGFDLVVGGNYDSCRGGTTVNAAMGMDSKKY 210
           K K D           FDL+  G    C    T + A G D  +Y
Sbjct: 60  KAKKD-------NIPYFDLLTSG--FPC---PTFSVAGGRDGMEY 92
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>RPOC_CHLTE (Q8KG14) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
           beta' subunit) (Transcriptase beta' chain) (RNA
           polymerase beta' subunit)
          Length = 1490

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 7/69 (10%)
 Frame = -1

Query: 506 YSG----VGGAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAKTEQSG---VLRQLPGI 348
           YSG    V G E+ LH+ G+P    + + +  V R++++R  AK+ +S    + ++ P +
Sbjct: 388 YSGRSVIVVGPELKLHQCGLPKSMAIELFQPFVIRRLVERGIAKSVKSAKKLIDKKDPVV 447

Query: 347 WKLKTDVLE 321
           W    DVLE
Sbjct: 448 W----DVLE 452
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>RPOC_CHLCH (Q3ATP4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
           beta' subunit) (Transcriptase beta' chain) (RNA
           polymerase beta' subunit)
          Length = 1502

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 7/69 (10%)
 Frame = -1

Query: 506 YSG----VGGAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAKTEQSG---VLRQLPGI 348
           YSG    V G E+ LH  G+P    + + +  V R+++ R  AK+ +S    + R+ P +
Sbjct: 388 YSGRSVIVVGPELKLHECGLPKSMAIELFQPFVIRRLVDRGIAKSVKSAKKLIDRKDPVV 447

Query: 347 WKLKTDVLE 321
           W    DVLE
Sbjct: 448 W----DVLE 452
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>RPOC_SHEVI (Q9KW13) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
           beta' subunit) (Transcriptase beta' chain) (RNA
           polymerase beta' subunit)
          Length = 1409

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
 Frame = -1

Query: 491 GAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAKTEQSG---VLRQLPGIWKLKTDVLE 321
           G  + LH+ G+P K  + + +  +  K+  R  A T ++    V R++P +W    DVL+
Sbjct: 358 GPTLRLHQCGLPKKMALELFKPFIYGKLEGRGLATTIKAAKKMVEREVPEVW----DVLD 413

Query: 320 DLFKE 306
           D+ +E
Sbjct: 414 DVIRE 418
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>PPNK1_SYNY3 (P74430) Probable inorganic polyphosphate/ATP-NAD kinase 1 (EC|
           2.7.1.23) (Poly(P)/ATP NAD kinase 1)
          Length = 305

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 7/82 (8%)
 Frame = -1

Query: 662 ILGY-----PPNHTSLFTLNPPDRIAAMKYAFQTDTIAYVLSVLKDIYPNGLRVLSIYSG 498
           +LGY     P  HT +  L PP    +M +A        VLS  + + P G+ +L+I +G
Sbjct: 42  LLGYSQPDRPICHTRIEHLTPPHFDESMPFAIVLGGDGTVLSAFRQLAPLGIPLLTINTG 101

Query: 497 VGG--AEVALHRLGIPLKCVVS 438
             G   E+ L++L   ++ +++
Sbjct: 102 HMGFLTEIYLNQLPTAIEQLIN 123
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>RPOC1_SOYBN (Q8HVY4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase beta' subunit) (RNA
           polymerase beta' subunit)
          Length = 687

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 16/69 (23%), Positives = 39/69 (56%), Gaps = 7/69 (10%)
 Frame = -1

Query: 506 YSG----VGGAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAKT---EQSGVLRQLPGI 348
           YSG    V G  ++LHR G+P +  + + ++ + R ++++ +A      +S +  + P +
Sbjct: 380 YSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRKHFASNIGIAKSKIREKEPIV 439

Query: 347 WKLKTDVLE 321
           W++  +V++
Sbjct: 440 WEILQEVMQ 448
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>RPOC1_LOTJA (Q9BBS8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase beta' subunit) (RNA
           polymerase beta' subunit)
          Length = 682

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 16/68 (23%), Positives = 38/68 (55%), Gaps = 7/68 (10%)
 Frame = -1

Query: 506 YSG----VGGAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAK---TEQSGVLRQLPGI 348
           YSG    V G  ++LHR G+P +  + + ++ + R ++++ +A      +S +  + P +
Sbjct: 380 YSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRSLIRKHFASNIGVAKSKIREKEPIV 439

Query: 347 WKLKTDVL 324
           W++  +V+
Sbjct: 440 WEILQEVM 447
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>MTC1_HERAU (P25263) Modification methylase HgiCI (EC 2.1.1.37)|
           (Cytosine-specific methyltransferase HgiCI) (M.HgiCI)
          Length = 420

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 4/35 (11%)
 Frame = -1

Query: 524 LRVLSIYSGVGGA----EVALHRLGIPLKCVVSIE 432
           L+ + +++G+GG     E A+H LGI   CV+S E
Sbjct: 2   LKFIDLFAGIGGMRLGFEQAMHELGIETACVLSSE 36
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>ACH1_KLULA (Q6CNR2) Acetyl-CoA hydrolase (EC 3.1.2.1) (Acetyl-CoA deacylase)|
           (Acetyl-CoA acylase)
          Length = 523

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 15/54 (27%), Positives = 28/54 (51%)
 Frame = +3

Query: 33  KRQLKVLLLSCTSPSYHLQVMTPSLVEDRW*RTHNYARQQLLKKCVHTPHSIKN 194
           + + + ++ +C  P Y        ++ D   R+ +YA+   L KC+H PH +KN
Sbjct: 459 RERAREIIKNCAHPDYQ------PILTDYLDRSEHYAK---LHKCMHEPHMLKN 503
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>RPOC_NEIMB (Q9K1J1) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
           beta' subunit) (Transcriptase beta' chain) (RNA
           polymerase beta' subunit)
          Length = 1391

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 17/65 (26%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
 Frame = -1

Query: 491 GAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAKTEQSG---VLRQLPGIWKLKTDVLE 321
           G  + LH+ G+P K  + + +  +  K+ K+  A T ++    V +++P +W    D+LE
Sbjct: 360 GPYLRLHQCGLPKKMALELFKPFIFHKLEKQGLASTVKAAKKLVEQEVPEVW----DILE 415

Query: 320 DLFKE 306
           ++ +E
Sbjct: 416 EVIRE 420
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>RPOC_NEIMA (Q9JX03) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
           beta' subunit) (Transcriptase beta' chain) (RNA
           polymerase beta' subunit)
          Length = 1391

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 17/65 (26%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
 Frame = -1

Query: 491 GAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAKTEQSG---VLRQLPGIWKLKTDVLE 321
           G  + LH+ G+P K  + + +  +  K+ K+  A T ++    V +++P +W    D+LE
Sbjct: 360 GPYLRLHQCGLPKKMALELFKPFIFHKLEKQGLASTVKAAKKLVEQEVPEVW----DILE 415

Query: 320 DLFKE 306
           ++ +E
Sbjct: 416 EVIRE 420
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>RPOC_NEIG1 (Q5F5R6) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
           beta' subunit) (Transcriptase beta' chain) (RNA
           polymerase beta' subunit)
          Length = 1391

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 17/65 (26%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
 Frame = -1

Query: 491 GAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAKTEQSG---VLRQLPGIWKLKTDVLE 321
           G  + LH+ G+P K  + + +  +  K+ K+  A T ++    V +++P +W    D+LE
Sbjct: 360 GPYLRLHQCGLPKKMALELFKPFIFHKLEKQGLASTVKAAKKLVEQEVPEVW----DILE 415

Query: 320 DLFKE 306
           ++ +E
Sbjct: 416 EVIRE 420
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>RPOC1_ARATH (P56763) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase beta' subunit) (RNA
           polymerase beta' subunit)
          Length = 680

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 17/69 (24%), Positives = 38/69 (55%), Gaps = 7/69 (10%)
 Frame = -1

Query: 506 YSG----VGGAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAK---TEQSGVLRQLPGI 348
           YSG    V G  ++LHR G+P +  + + ++ V R ++++  A      +S +  + P +
Sbjct: 378 YSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKSQIREKKPIV 437

Query: 347 WKLKTDVLE 321
           W++  +V++
Sbjct: 438 WEILQEVMQ 446
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>RPOC1_SINAL (P46819) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase beta' subunit) (RNA
           polymerase beta' subunit)
          Length = 688

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 17/69 (24%), Positives = 38/69 (55%), Gaps = 7/69 (10%)
 Frame = -1

Query: 506 YSG----VGGAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAK---TEQSGVLRQLPGI 348
           YSG    V G  ++LHR G+P +  + + ++ V R ++++  A      +S +  + P +
Sbjct: 386 YSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKSQIREKKPIV 445

Query: 347 WKLKTDVLE 321
           W++  +V++
Sbjct: 446 WEILQEVMQ 454
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>RPOC_CORGL (Q8NT25) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
           beta' subunit) (Transcriptase beta' chain) (RNA
           polymerase beta' subunit)
          Length = 1333

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
 Frame = -1

Query: 506 YSG----VGGAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAKTEQSG---VLRQLPGI 348
           YSG    + G ++ LH  G+P    + + +  V +++++  +A+  +S    V RQ P +
Sbjct: 424 YSGRSVIIVGPQLRLHECGLPKLMALELFKPFVMKRLVENEYAQNIKSAKRMVERQRPEV 483

Query: 347 WKLKTDVLEDLFKE 306
           W    DVLE+   E
Sbjct: 484 W----DVLEEAISE 493
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>RPOC_COREF (Q8FS96) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
           beta' subunit) (Transcriptase beta' chain) (RNA
           polymerase beta' subunit)
          Length = 1333

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
 Frame = -1

Query: 506 YSG----VGGAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAKTEQSG---VLRQLPGI 348
           YSG    + G ++ LH  G+P    + + +  V +++++  +A+  +S    V RQ P +
Sbjct: 424 YSGRSVIIVGPQLRLHECGLPKLMALELFKPFVMKRLVENEYAQNIKSAKRMVERQRPEV 483

Query: 347 WKLKTDVLEDLFKE 306
           W    DVLE+   E
Sbjct: 484 W----DVLEEAISE 493
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>RPOC_DESVH (Q727C6) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
           beta' subunit) (Transcriptase beta' chain) (RNA
           polymerase beta' subunit)
          Length = 1385

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 7/75 (9%)
 Frame = -1

Query: 506 YSG----VGGAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAKTEQSG---VLRQLPGI 348
           YSG    V G ++ LH+ G+P K  + + +  +  ++ KR  A T +S    V R+   +
Sbjct: 355 YSGRSVIVVGPKLKLHQCGLPKKMALELFKPFIYSELEKRGLASTIKSAKKMVEREELVV 414

Query: 347 WKLKTDVLEDLFKEF 303
           W    D+LE++ +E+
Sbjct: 415 W----DILEEVVREY 425
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>RPOC1_PANGI (Q68S15) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase beta' subunit) (RNA
           polymerase beta' subunit)
          Length = 682

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 17/69 (24%), Positives = 38/69 (55%), Gaps = 7/69 (10%)
 Frame = -1

Query: 506 YSG----VGGAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAK---TEQSGVLRQLPGI 348
           YSG    V G  ++LHR G+P +  + + ++ V R ++++  A      +S +  + P +
Sbjct: 378 YSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKSKIREKEPIV 437

Query: 347 WKLKTDVLE 321
           W++  +V++
Sbjct: 438 WEILQEVMQ 446
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>RPOC1_NICTO (Q33C47) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase beta' subunit) (RNA
           polymerase beta' subunit)
          Length = 681

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 17/69 (24%), Positives = 38/69 (55%), Gaps = 7/69 (10%)
 Frame = -1

Query: 506 YSG----VGGAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAK---TEQSGVLRQLPGI 348
           YSG    V G  ++LHR G+P +  + + ++ V R ++++  A      +S +  + P +
Sbjct: 378 YSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKSQIREKEPIV 437

Query: 347 WKLKTDVLE 321
           W++  +V++
Sbjct: 438 WEILQEVMQ 446
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>RPOC1_NICSY (Q3C1G8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase beta' subunit) (RNA
           polymerase beta' subunit)
          Length = 681

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 17/69 (24%), Positives = 38/69 (55%), Gaps = 7/69 (10%)
 Frame = -1

Query: 506 YSG----VGGAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAK---TEQSGVLRQLPGI 348
           YSG    V G  ++LHR G+P +  + + ++ V R ++++  A      +S +  + P +
Sbjct: 378 YSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKSKIREKEPIV 437

Query: 347 WKLKTDVLE 321
           W++  +V++
Sbjct: 438 WEILQEVMQ 446
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>RPOC1_ATRBE (Q8S8Y0) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase beta' subunit) (RNA
           polymerase beta' subunit)
          Length = 681

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 17/69 (24%), Positives = 38/69 (55%), Gaps = 7/69 (10%)
 Frame = -1

Query: 506 YSG----VGGAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAK---TEQSGVLRQLPGI 348
           YSG    V G  ++LHR G+P +  + + ++ V R ++++  A      +S +  + P +
Sbjct: 378 YSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKSKIREKEPIV 437

Query: 347 WKLKTDVLE 321
           W++  +V++
Sbjct: 438 WEILQEVMQ 446
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>RPOC1_ACOGR (Q5QA71) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase beta' subunit) (RNA
           polymerase beta' subunit)
          Length = 682

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 17/69 (24%), Positives = 38/69 (55%), Gaps = 7/69 (10%)
 Frame = -1

Query: 506 YSG----VGGAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAKT---EQSGVLRQLPGI 348
           YSG    V G  ++LHR G+P +  + + ++ V R ++++  A      +S +  + P +
Sbjct: 378 YSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGIAKSKIREKEPIV 437

Query: 347 WKLKTDVLE 321
           W++  +V++
Sbjct: 438 WEILQEVMQ 446
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>RPOC1_ACOCL (Q3V543) DNA-directed RNA polymerase gamma chain (EC 2.7.7.6) (RNAP|
           gamma subunit) (Transcriptase gamma chain) (RNA
           polymerase gamma subunit)
          Length = 682

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 17/69 (24%), Positives = 38/69 (55%), Gaps = 7/69 (10%)
 Frame = -1

Query: 506 YSG----VGGAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAKT---EQSGVLRQLPGI 348
           YSG    V G  ++LHR G+P +  + + ++ V R ++++  A      +S +  + P +
Sbjct: 378 YSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGIAKSKIREKEPIV 437

Query: 347 WKLKTDVLE 321
           W++  +V++
Sbjct: 438 WEILQEVMQ 446
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>RPOC1_SOLTU (Q2VEI5) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase beta' subunit) (RNA
           polymerase beta' subunit)
          Length = 687

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 17/69 (24%), Positives = 38/69 (55%), Gaps = 7/69 (10%)
 Frame = -1

Query: 506 YSG----VGGAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAK---TEQSGVLRQLPGI 348
           YSG    V G  ++LHR G+P +  + + ++ V R ++++  A      +S +  + P +
Sbjct: 384 YSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKSKIREKEPIV 443

Query: 347 WKLKTDVLE 321
           W++  +V++
Sbjct: 444 WEILQEVMQ 452
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>RPOC_DESDG (Q30X04) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
           beta' subunit) (Transcriptase beta' chain) (RNA
           polymerase beta' subunit)
          Length = 1386

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 7/75 (9%)
 Frame = -1

Query: 506 YSG----VGGAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAKTEQSG---VLRQLPGI 348
           YSG    V G ++ LH+ G+P K  + + +  +  K+ +R  A T +S    V R+   +
Sbjct: 355 YSGRSVIVVGPKLKLHQCGLPKKMALELFKPFIYSKLEERGLASTIKSAKKMVEREELVV 414

Query: 347 WKLKTDVLEDLFKEF 303
           W    D+LE++ +E+
Sbjct: 415 W----DILEEVVREY 425
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>RPOC1_TOBAC (P12116) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase beta' subunit) (RNA
           polymerase beta' subunit)
          Length = 680

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 17/69 (24%), Positives = 38/69 (55%), Gaps = 7/69 (10%)
 Frame = -1

Query: 506 YSG----VGGAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAK---TEQSGVLRQLPGI 348
           YSG    V G  ++LHR G+P +  + + ++ V R ++++  A      +S +  + P +
Sbjct: 377 YSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKSKIREKEPIV 436

Query: 347 WKLKTDVLE 321
           W++  +V++
Sbjct: 437 WEILQEVMQ 445
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>RPOC1_CUCSA (Q4VZP2) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase beta' subunit) (RNA
           polymerase beta' subunit)
          Length = 680

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 16/69 (23%), Positives = 39/69 (56%), Gaps = 7/69 (10%)
 Frame = -1

Query: 506 YSG----VGGAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAK---TEQSGVLRQLPGI 348
           YSG    V G  ++LHR G+P +  + + ++ + R ++++ +A      +S +  + P +
Sbjct: 378 YSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIV 437

Query: 347 WKLKTDVLE 321
           W++  +V++
Sbjct: 438 WEILQEVMQ 446
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>PUR7_ARCFU (O28996) Putative phosphoribosylaminoimidazole-succinocarboxamide|
           synthase (EC 6.3.2.6) (SAICAR synthetase)
          Length = 331

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 13/39 (33%), Positives = 25/39 (64%)
 Frame = -1

Query: 467 LGIPLKCVVSIEESDVNRKILKRWWAKTEQSGVLRQLPG 351
           +G P +C  S +  +V++++L+ ++ KTE    +RQL G
Sbjct: 237 VGTPDECRFSFDGFEVSKELLREYYRKTEWYDKVRQLKG 275
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>CAN1_RABIT (P06815) Calpain-1 catalytic subunit (EC 3.4.22.52) (Calpain-1|
           large subunit) (Calcium-activated neutral proteinase 1)
           (CANP 1) (Calpain mu-type) (muCANP) (Micromolar-calpain)
           (Fragment)
          Length = 302

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 29/102 (28%), Positives = 45/102 (44%)
 Frame = -1

Query: 461 IPLKCVVSIEESDVNRKILKRWWAKTEQSGVLRQLPGIWKLKTDVLEDLFKEFGGFDLVV 282
           +P + V+S EE D N K L R  A  +    +R+L  I    T   +DL  +        
Sbjct: 120 LPDEQVLSAEEIDENFKALFRQLAGEDLEISVRELQTILNRITSKHKDLRTK-------- 171

Query: 281 GGNYDSCRGGTTVNAAMGMDSKKYFEFVRVLNRVRSMHALFK 156
           G + +SCR    +    G       EF  + NR+R+  A+F+
Sbjct: 172 GFSMESCRSMVNLMDRDGNGKLGLVEFNILWNRIRNYLAIFR 213
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>RPOC1_SPIOL (P11705) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase beta' subunit) (RNA
           polymerase beta' subunit)
          Length = 677

 Score = 29.6 bits (65), Expect = 8.5
 Identities = 17/69 (24%), Positives = 37/69 (53%), Gaps = 7/69 (10%)
 Frame = -1

Query: 506 YSG----VGGAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAK---TEQSGVLRQLPGI 348
           YSG    V G  ++LHR G+P +  + + ++ V R ++++  A      +  +  + P +
Sbjct: 378 YSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKRKIREKEPIV 437

Query: 347 WKLKTDVLE 321
           WK+  +V++
Sbjct: 438 WKILQEVMQ 446
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>NGAP_HUMAN (Q9UJF2) Ras GTPase-activating protein nGAP (RAS protein|
           activator-like 1)
          Length = 1139

 Score = 29.6 bits (65), Expect = 8.5
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -3

Query: 636 KSVYSKPTGQDCCYEIRFSNGHDCL-CSVGPKRHISKWFE 520
           K ++S   GQD C+E+ + +G  C  C+   +R   KW E
Sbjct: 114 KPLHSSILGQDFCFEVTYLSGSKCFSCNSASER--DKWME 151
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>RPOC1_AMBTC (P60287) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase beta' subunit) (RNA
           polymerase beta' subunit)
          Length = 680

 Score = 29.6 bits (65), Expect = 8.5
 Identities = 18/69 (26%), Positives = 37/69 (53%), Gaps = 7/69 (10%)
 Frame = -1

Query: 506 YSG----VGGAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAKT---EQSGVLRQLPGI 348
           YSG    V G  ++LHR G+P +  + + ++ V R ++++  A      +S +  + P +
Sbjct: 378 YSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHVASNIGIAKSKIREKEPIV 437

Query: 347 WKLKTDVLE 321
           W++   V+E
Sbjct: 438 WEILQKVME 446
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>RPOC_PSEPU (P19176) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
           beta' subunit) (Transcriptase beta' chain) (RNA
           polymerase beta' subunit)
          Length = 1398

 Score = 29.6 bits (65), Expect = 8.5
 Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
 Frame = -1

Query: 530 NGLRVLSIYSGVGGAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAKTEQSG---VLRQ 360
           +G  V+S+     G  + LH+ G+P K  + + +  +  K+  R  A T ++    V R+
Sbjct: 350 SGRSVISV-----GPTLRLHQCGLPKKMALELFKPFIFGKLEMRGLATTIKAAKKMVERE 404

Query: 359 LPGIWKLKTDVLED 318
           LP +W +  +V+ +
Sbjct: 405 LPEVWDVLAEVIRE 418
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>RPOC1_CALFE (Q7YJX9) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase beta' subunit) (RNA
           polymerase beta' subunit)
          Length = 678

 Score = 29.6 bits (65), Expect = 8.5
 Identities = 17/69 (24%), Positives = 38/69 (55%), Gaps = 7/69 (10%)
 Frame = -1

Query: 506 YSG----VGGAEVALHRLGIPLKCVVSIEESDVNRKILKRWWAKT---EQSGVLRQLPGI 348
           YSG    V G  ++LHR G+P +  + + ++ V R ++++  A      +S +  + P +
Sbjct: 378 YSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHVASNIGIAKSKIREKEPIV 437

Query: 347 WKLKTDVLE 321
           W++  +V++
Sbjct: 438 WEILQEVMQ 446


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,575,405
Number of Sequences: 219361
Number of extensions: 2075829
Number of successful extensions: 5661
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 5463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5652
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6427774254
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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