ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd14k23 |
|---|---|
| Clone Library Name | barley_pub |
>YMB8_YEAST (Q03730) Hypothetical 43.7 kDa protein in OST6-PSP2 intergenic| region Length = 393 Score = 50.8 bits (120), Expect = 4e-06 Identities = 34/108 (31%), Positives = 49/108 (45%), Gaps = 1/108 (0%) Frame = -2 Query: 693 LGLFNMLFFLPVALVLNFAKLEPFHTLTWEQVGLIVGKGLLDNVLSDYLWAKXXXXXXXX 514 +GLFN+LF P +VL+F EPF +V +I+ L +SD+ WAK Sbjct: 263 VGLFNLLFLWPSLIVLDFFGWEPFSLPKDPKVVVIIFVNCLITFVSDFCWAKAMLLTSPL 322 Query: 513 XXXXXXTIQVPIAALVDTLTGH-APGLLNYIGAAAVLVGFAGINIPSD 373 +I +P+A D + H L GA +L F IN S+ Sbjct: 323 TVTVGLSITIPLAMFGDVIFKHKTMSALYLFGATLILGSFFIINKSSE 370
>PHF7_RAT (Q6AXW4) PHD finger protein 7| Length = 380 Score = 30.8 bits (68), Expect = 4.1 Identities = 24/66 (36%), Positives = 29/66 (43%), Gaps = 2/66 (3%) Frame = -1 Query: 529 SHNNHR-CYSRSYNPSSYRC-PCGHAHWSCSRSVELHRSCCCISRFCWHQHPIRCATAFS 356 SH HR C S N + C C A S S L + CC S FC H+ P AT+ Sbjct: 277 SHGTHRDCSSLRPNSKKWECNECLPASTEDSVSENLGDTPCCSSTFCPHE-PFLRATSLE 335 Query: 355 A*AGST 338 GS+ Sbjct: 336 ENPGSS 341
>STRH_STRPN (P49610) Beta-N-acetylhexosaminidase precursor (EC 3.2.1.52)| Length = 1312 Score = 30.4 bits (67), Expect = 5.3 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 2/50 (4%) Frame = -2 Query: 426 IGAAAVLVGFA--GINIPSDVLQPSRHEQEAPIVTIVDDSQHSPSDRNST 283 +GAA+VL+GFA + +D + P+ E + I T+ D Q S + T Sbjct: 16 VGAASVLIGFAFQAQTVAADGVTPTTTENQPTIHTVSDSPQSSENRTEET 65
>NEL_CHICK (Q90827) Protein NEL precursor (93 kDa protein)| Length = 816 Score = 30.4 bits (67), Expect = 5.3 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%) Frame = +1 Query: 493 CKTGCSNGGCC--EKDCFCPQVVT 558 CK GC NGG C C CPQ T Sbjct: 525 CKDGCRNGGACIASNVCACPQGFT 548
>NELL2_RAT (Q62918) Protein kinase C-binding protein NELL2 precursor (NEL-like| protein 2) Length = 816 Score = 30.4 bits (67), Expect = 5.3 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%) Frame = +1 Query: 493 CKTGCSNGGCC--EKDCFCPQVVT 558 CK GC NGG C C CPQ T Sbjct: 525 CKDGCKNGGACIAANVCACPQGFT 548
>PEX1_PICPA (P46463) Peroxisome biosynthesis protein PAS1 (Peroxin-1)| Length = 1157 Score = 30.4 bits (67), Expect = 5.3 Identities = 16/40 (40%), Positives = 21/40 (52%) Frame = +3 Query: 165 VVAWGKPDRTGLASPGIQCLVITLGQEPETSQTATMKQHP 284 +V G PDRTGL S I+ L ++ Q +T A HP Sbjct: 273 LVGPGTPDRTGLTSSKIKQLNDSIDQAAQTQTNAAGSSHP 312
>NELL2_MOUSE (Q61220) Protein kinase C-binding protein NELL2 precursor (NEL-like| protein 2) (MEL91 protein) Length = 816 Score = 30.0 bits (66), Expect = 6.9 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%) Frame = +1 Query: 493 CKTGCSNGGCC--EKDCFCPQVVT 558 CK GC NGG C C CPQ T Sbjct: 525 CKDGCRNGGACIAANVCACPQGFT 548
>NELL2_HUMAN (Q99435) Protein kinase C-binding protein NELL2 precursor (NEL-like| protein 2) (Nel-related protein 2) Length = 816 Score = 30.0 bits (66), Expect = 6.9 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%) Frame = +1 Query: 493 CKTGCSNGGCC--EKDCFCPQVVT 558 CK GC NGG C C CPQ T Sbjct: 525 CKDGCRNGGACIAANVCACPQGFT 548
>FA10_TROCA (Q4QXT9) Coagulation factor X precursor (EC 3.4.21.6) [Contains:| Factor X light chain; Factor X heavy chain; Activated factor Xa heavy chain] Length = 483 Score = 30.0 bits (66), Expect = 6.9 Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 5/66 (7%) Frame = -1 Query: 538 SNPSHNNHRCYSRSYNPSSYRCPCGHAHWSCSRSVELHRSCCCISRFCWH-----QHPIR 374 SNP H C SY C C + + L++SC + CWH Q+ I+ Sbjct: 92 SNPCHYGGTCKD---GIGSYTCTCLAGYEGKNCQYVLYQSCRVDNGNCWHFCKPVQNEIQ 148 Query: 373 CATAFS 356 C+ A S Sbjct: 149 CSCAES 154
>NOTC4_MOUSE (P31695) Neurogenic locus notch homolog protein 4 precursor (Notch 4)| [Contains: Transforming protein Int-3; Notch 4 extracellular truncation; Notch 4 intracellular domain] Length = 1964 Score = 30.0 bits (66), Expect = 6.9 Identities = 25/80 (31%), Positives = 33/80 (41%), Gaps = 2/80 (2%) Frame = -1 Query: 565 CSE*LLVGKSNPSHNNHRCYSRSYNPSSYRCPC--GHAHWSCSRSVELHRSCCCISRFCW 392 CS+ L +S P HN+ C SR P + C C G C V+ C+ R C Sbjct: 961 CSKVLEACQSQPCHNHGTCTSR---PGGFHCACPPGFVGLRCEGDVDE-----CLDRPC- 1011 Query: 391 HQHPIRCATAFSA*AGSTHC 332 HP A S A + +C Sbjct: 1012 --HPSGTAACHSL-ANAFYC 1028
>TIE1_MOUSE (Q06806) Tyrosine-protein kinase receptor Tie-1 precursor (EC| 2.7.10.1) Length = 1134 Score = 29.6 bits (65), Expect = 9.1 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 2/29 (6%) Frame = +1 Query: 466 HKGSDRNLDCKTGCSNGGCCEK--DCFCP 546 H G+D L C+ C NGG C++ C CP Sbjct: 308 HFGADCRLQCQ--CQNGGTCDRFSGCVCP 334
>TIE1_HUMAN (P35590) Tyrosine-protein kinase receptor Tie-1 precursor (EC| 2.7.10.1) Length = 1138 Score = 29.6 bits (65), Expect = 9.1 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 2/29 (6%) Frame = +1 Query: 466 HKGSDRNLDCKTGCSNGGCCEK--DCFCP 546 H G+D L C+ C NGG C++ C CP Sbjct: 310 HFGADCRLQCQ--CQNGGTCDRFSGCVCP 336
>EZ1_MAIZE (Q8S4P6) Polycomb protein EZ1 (Enhancer of zeste protein 1)| Length = 931 Score = 29.6 bits (65), Expect = 9.1 Identities = 10/15 (66%), Positives = 12/15 (80%) Frame = +1 Query: 508 SNGGCCEKDCFCPQV 552 SNG CCEK C CP++ Sbjct: 695 SNGTCCEKYCGCPKI 709
>Y3474_PSEAE (O68826) Hypothetical membrane protein PA3474| Length = 286 Score = 29.6 bits (65), Expect = 9.1 Identities = 19/74 (25%), Positives = 29/74 (39%) Frame = -2 Query: 678 MLFFLPVALVLNFAKLEPFHTLTWEQVGLIVGKGLLDNVLSDYLWAKXXXXXXXXXXXXX 499 +L LP L+ + P L W G++V GLL L + W K Sbjct: 182 LLVALPAWLLFGDPQRLPAGELQW---GVLVWMGLLATALGQFWWNKGATEVDAGTLAVM 238 Query: 498 XTIQVPIAALVDTL 457 + VP+ L++ L Sbjct: 239 NNLHVPVGLLLNLL 252
>KR410_HUMAN (Q9BYQ7) Keratin-associated protein 4-10 (Keratin-associated| protein 4.10) (Ultrahigh sulfur keratin-associated protein 4.10) Length = 127 Score = 29.6 bits (65), Expect = 9.1 Identities = 14/41 (34%), Positives = 21/41 (51%) Frame = +1 Query: 442 GSMTSERVHKGSDRNLDCKTGCSNGGCCEKDCFCPQVVTQN 564 GS+ S++ G D+ L C+ C CC+ C CP V + Sbjct: 7 GSVCSDQ---GCDQGL-CQETCCRPSCCQTTCCCPSCVVSS 43 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 110,288,418 Number of Sequences: 219361 Number of extensions: 2445698 Number of successful extensions: 6845 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 6259 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6837 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 6856295237 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
