ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd14k03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1J1L_HCMVA (P17143) Hypothetical protein J1L 33 0.85
2KR103_HUMAN (P60369) Keratin-associated protein 10-3 (Keratin-as... 31 2.5
3Y1679_GLUOX (Q5FQC7) UPF0082 protein GOX1679 31 3.2
4ATP4A_XENLA (Q92126) Potassium-transporting ATPase alpha chain 1... 30 5.5
5ATP4A_PIG (P19156) Potassium-transporting ATPase alpha chain 1 (... 30 7.2
6ATP4A_CANFA (P50996) Potassium-transporting ATPase alpha chain 1... 30 7.2
7ATP4A_RABIT (P27112) Potassium-transporting ATPase alpha chain 1... 30 7.2
8ATP4A_HUMAN (P20648) Potassium-transporting ATPase alpha chain 1... 30 7.2
9SELU_BORBR (Q7WE96) tRNA 2-selenouridine synthase (EC 2.9.1.-) (... 30 7.2
10GMIP_HUMAN (Q9P107) GEM-interacting protein (GMIP) 30 7.2
11ATP4A_RAT (P09626) Potassium-transporting ATPase alpha chain 1 (... 30 7.2
12ATP4A_MOUSE (Q64436) Potassium-transporting ATPase alpha chain 1... 30 7.2

>J1L_HCMVA (P17143) Hypothetical protein J1L|
          Length = 309

 Score = 32.7 bits (73), Expect = 0.85
 Identities = 30/103 (29%), Positives = 36/103 (34%), Gaps = 5/103 (4%)
 Frame = -3

Query: 400 TEEEPPSHLYIPRHSMRRLHWIWAYRPCEADDTWFASSHDNTAPRRDLGP*VRPSPACRR 221
           T    P     PRH  R        R    D     ++   T  R    P  RP   CR+
Sbjct: 39  TPSRTPPVSATPRHRRR------PERSKTPDKRSAETTQARTVERTGSAPKHRPEARCRQ 92

Query: 220 SASPWE----HCFISWSPPTLFVTNESGK-HNAHPQASCFGCV 107
              PW+     C  S    TL   N   + H+A P   CFGCV
Sbjct: 93  QI-PWDDTHRQCAGSVGHNTLTALNTPSRTHHAAPHRRCFGCV 134



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>KR103_HUMAN (P60369) Keratin-associated protein 10-3 (Keratin-associated|
           protein 10.3) (High sulfur keratin-associated protein
           10.3) (Keratin-associated protein 18-3)
           (Keratin-associated protein 18.3)
          Length = 221

 Score = 31.2 bits (69), Expect = 2.5
 Identities = 16/46 (34%), Positives = 19/46 (41%)
 Frame = +1

Query: 295 QTMCHPPHKACRPKSNEAAACCALVCTGG*VAPLRCS*GACCDFWC 432
           ++ C PP   C P     A C  LVCT     P+ C    CC   C
Sbjct: 24  ESCCEPP--CCAPSCCAPAPCLTLVCT-----PVSCVSSPCCQAAC 62



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>Y1679_GLUOX (Q5FQC7) UPF0082 protein GOX1679|
          Length = 249

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = -1

Query: 525 LYDTQSVALLFL-IGVVSVTPALLSKDEAQEKAPEIAAGAS*TPKRSHLATCTYQ 364
           L +T SV+ +F  +GV+S    + S+DE  E A E  A  + T +  H  TC  +
Sbjct: 124 LGETNSVSFMFQRLGVISYPLDVASEDEMLEAAIEAGADNAETTEEGHEVTCAME 178



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>ATP4A_XENLA (Q92126) Potassium-transporting ATPase alpha chain 1 (EC 3.6.3.10)|
           (Proton pump) (Gastric H+/K+ ATPase alpha subunit)
          Length = 1030

 Score = 30.0 bits (66), Expect = 5.5
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 329 GPNPMKPPHAVPWYVQVARWLLFGV 403
           GPN +KPP   P Y++ AR L  G+
Sbjct: 82  GPNELKPPKGTPEYIKFARQLAGGL 106



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>ATP4A_PIG (P19156) Potassium-transporting ATPase alpha chain 1 (EC 3.6.3.10)|
           (Proton pump) (Gastric H+/K+ ATPase alpha subunit)
          Length = 1033

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 329 GPNPMKPPHAVPWYVQVARWLLFGV 403
           GPN ++PP   P YV+ AR L  G+
Sbjct: 85  GPNALRPPRGTPEYVKFARQLAGGL 109



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>ATP4A_CANFA (P50996) Potassium-transporting ATPase alpha chain 1 (EC 3.6.3.10)|
           (Proton pump) (Gastric H+/K+ ATPase alpha subunit)
          Length = 1033

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 329 GPNPMKPPHAVPWYVQVARWLLFGV 403
           GPN ++PP   P YV+ AR L  G+
Sbjct: 85  GPNALRPPRGTPEYVKFARQLAGGL 109



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>ATP4A_RABIT (P27112) Potassium-transporting ATPase alpha chain 1 (EC 3.6.3.10)|
           (Proton pump) (Gastric H+/K+ ATPase alpha subunit)
          Length = 1034

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 329 GPNPMKPPHAVPWYVQVARWLLFGV 403
           GPN ++PP   P YV+ AR L  G+
Sbjct: 86  GPNALRPPRGTPEYVKFARQLAGGL 110



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>ATP4A_HUMAN (P20648) Potassium-transporting ATPase alpha chain 1 (EC 3.6.3.10)|
           (Proton pump) (Gastric H+/K+ ATPase alpha subunit)
          Length = 1034

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 329 GPNPMKPPHAVPWYVQVARWLLFGV 403
           GPN ++PP   P YV+ AR L  G+
Sbjct: 86  GPNALRPPRGTPEYVKFARQLAGGL 110



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>SELU_BORBR (Q7WE96) tRNA 2-selenouridine synthase (EC 2.9.1.-)|
           (Selenophosphate-dependent tRNA 2-selenouridine
           synthase)
          Length = 368

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = -1

Query: 384 LATCTYQGTACGGFIGFGPTGLVRRMTHGLLVHMTTQHHGGTLDPESAHHP 232
           +A C +     GG  G G T ++R++ HGL +     H G +    +   P
Sbjct: 139 IAECGF--VVLGGMTGTGKTDVLRQLDHGLDLEAHAHHRGSSFGKHATGQP 187



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>GMIP_HUMAN (Q9P107) GEM-interacting protein (GMIP)|
          Length = 970

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 19/57 (33%), Positives = 27/57 (47%)
 Frame = -3

Query: 529  RPVRHPVSSSAVLDRRRLGHTSIAEQGRGSRKGTRNRSRRLMNTEEEPPSHLYIPRH 359
            RPV H +SS A++  +    T I    RGS +G R  S    + E  P     +P+H
Sbjct: 878  RPVTHQLSSLALVASKLCEETPITSVPRGSLRG-RGPSPAAASPEGSPLRRTPLPKH 933



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>ATP4A_RAT (P09626) Potassium-transporting ATPase alpha chain 1 (EC 3.6.3.10)|
           (Proton pump) (Gastric H+/K+ ATPase alpha subunit)
          Length = 1032

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 329 GPNPMKPPHAVPWYVQVARWLLFGV 403
           GPN ++PP   P YV+ AR L  G+
Sbjct: 84  GPNALRPPRGTPEYVKFARQLAGGL 108



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>ATP4A_MOUSE (Q64436) Potassium-transporting ATPase alpha chain 1 (EC 3.6.3.10)|
           (Proton pump) (Gastric H+/K+ ATPase alpha subunit)
          Length = 1032

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 329 GPNPMKPPHAVPWYVQVARWLLFGV 403
           GPN ++PP   P YV+ AR L  G+
Sbjct: 84  GPNALRPPRGTPEYVKFARQLAGGL 108


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,365,183
Number of Sequences: 219361
Number of extensions: 2250975
Number of successful extensions: 6335
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6318
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5424720305
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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