>gb|BT017066.1| Zea mays clone EL01N0358F01.c mRNA sequence
          Length = 876

 Score =  117 bits (59), Expect = 4e-23
 Identities = 174/211 (82%), Gaps = 1/211 (0%)
 Strand = Plus / Minus

                                                                       
Query: 398 ggtgttcatgaggcgcctgctgcgatttctggtgccttttcttgagcctcgtccttgctc 457
           |||| |||||| |||||| | || ||||||||||  || ||||| ||||| ||||||| |
Sbjct: 548 ggtgatcatgacgcgcctaccgccatttctggtggtttctcttgtgcctcatccttgccc 489

                                                                       
Query: 458 agcaatgctggtgtgaccgagacgacgccgatcaagaacagcagagctactgactgggtg 517
           ||||||||||||||||| || || || ||||||| ||| ||||| ||||  |||||||||
Sbjct: 488 agcaatgctggtgtgactgaaacaacaccgatcaggaatagcagtgctatcgactgggtg 429

                                                                       
Query: 518 tcgtacaggtcgctgagcgatgtcagctctcccagagcaatgccagccctcacgggtcac 577
           ||||| ||||| || ||||| || | |||||| |||||||| |||||||| ||  |||||
Sbjct: 428 tcgtaaaggtcactcagcgaagttaactctccaagagcaattccagccctgac-agtcac 370

                                          
Query: 578 gtaggctgctgggatgagaccgataagagtt 608
            || || |||||||| ||||| || ||||||
Sbjct: 369 ataagcagctgggataagaccaatgagagtt 339

>gb|AY110364.1| Zea mays CL5344_1 mRNA sequence
          Length = 1292

 Score =  103 bits (52), Expect = 7e-19
 Identities = 143/172 (83%), Gaps = 1/172 (0%)
 Strand = Plus / Minus

                                                                       
Query: 437 tcttgagcctcgtccttgctcagcaatgctggtgtgaccgagacgacgccgatcaagaac 496
           ||||| ||||| ||||||| |||||||||||||||||| || || || ||||||| ||| 
Sbjct: 887 tcttgtgcctcatccttgcccagcaatgctggtgtgactgaaacaacaccgatcaggaat 828

                                                                       
Query: 497 agcagagctactgactgggtgtcgtacaggtcgctgagcgatgtcagctctcccagagca 556
           ||||| ||||  |||||||||||||| ||||| || ||||| || | |||||| ||||||
Sbjct: 827 agcagtgctatcgactgggtgtcgtaaaggtcactcagcgaagttaactctccaagagca 768

                                                               
Query: 557 atgccagccctcacgggtcacgtaggctgctgggatgagaccgataagagtt 608
           || |||||||| ||  ||||| || || |||||||| ||||| || ||||||
Sbjct: 767 attccagccctgac-agtcacataagcagctgggataagaccaatgagagtt 717



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 34/37 (91%), Gaps = 1/37 (2%)
 Strand = Plus / Minus

                                                 
Query: 1    tggattgaatgaatctggtcatatatatacaaggatt 37
            ||||||||||||||||||| | ||||||||| |||||
Sbjct: 1280 tggattgaatgaatctggtta-atatatacagggatt 1245

>dbj|AK071102.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023077L10, full
           insert sequence
          Length = 1310

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 145/176 (82%), Gaps = 1/176 (0%)
 Strand = Plus / Minus

                                                                       
Query: 434 ttttcttgagcctcgtccttgctcagcaatgctggtgtgaccgagacgacgccgatcaag 493
           |||||||| || |||||||||| || ||||| |||||||||||| || |  |||||||||
Sbjct: 892 ttttcttgcgcttcgtccttgcccaacaatgttggtgtgaccgaaacaatcccgatcaag 833

                                                                       
Query: 494 aacagcagagctactgactgggtgtcgtacaggtcgctgagcgatgtcagctctcccaga 553
           |||||||| ||||  || ||||| || |||||||| || |  ||||| | |||||| |||
Sbjct: 832 aacagcagcgctatcgattgggtatcatacaggtcactcaatgatgttaactctcctaga 773

                                                                   
Query: 554 gcaatgccagccctcacgggtcacgtaggctgctgggatgagaccgataagagttg 609
           ||||| |||||||| ||  || || ||||  ||||||||||||||||| |||||||
Sbjct: 772 gcaatcccagccctgac-agtaacataggaagctgggatgagaccgatgagagttg 718



 Score = 40.1 bits (20), Expect = 8.3
 Identities = 33/36 (91%), Gaps = 1/36 (2%)
 Strand = Plus / Minus

                                                
Query: 1    tggattgaatgaatctggtcatatatatacaaggat 36
            ||||||||||||||||| ||| ||||||||| ||||
Sbjct: 1293 tggattgaatgaatctgatca-atatatacagggat 1259

>emb|AL662952.6|OSJN00151 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0009P12,
             complete sequence
          Length = 179644

 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 109/132 (82%)
 Strand = Plus / Plus

                                                                         
Query: 434   ttttcttgagcctcgtccttgctcagcaatgctggtgtgaccgagacgacgccgatcaag 493
             |||||||| || |||||||||| || ||||| |||||||||||| || |  |||||||||
Sbjct: 85617 ttttcttgcgcttcgtccttgcccaacaatgttggtgtgaccgaaacaatcccgatcaag 85676

                                                                         
Query: 494   aacagcagagctactgactgggtgtcgtacaggtcgctgagcgatgtcagctctcccaga 553
             |||||||| ||||  || ||||| || |||||||| || |  ||||| | |||||| |||
Sbjct: 85677 aacagcagcgctatcgattgggtatcatacaggtcactcaatgatgttaactctcctaga 85736

                         
Query: 554   gcaatgccagcc 565
             ||||| ||||||
Sbjct: 85737 gcaatcccagcc 85748



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 585   gctgggatgagaccgataagagttg 609
             ||||||||||||||||| |||||||
Sbjct: 85854 gctgggatgagaccgatgagagttg 85878



 Score = 40.1 bits (20), Expect = 8.3
 Identities = 33/36 (91%), Gaps = 1/36 (2%)
 Strand = Plus / Plus

                                                 
Query: 1     tggattgaatgaatctggtcatatatatacaaggat 36
             ||||||||||||||||| ||| ||||||||| ||||
Sbjct: 85216 tggattgaatgaatctgatca-atatatacagggat 85250

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 109/132 (82%)
 Strand = Plus / Plus

                                                                            
Query: 434      ttttcttgagcctcgtccttgctcagcaatgctggtgtgaccgagacgacgccgatcaag 493
                |||||||| || |||||||||| || ||||| |||||||||||| || |  |||||||||
Sbjct: 29948865 ttttcttgcgcttcgtccttgcccaacaatgttggtgtgaccgaaacaatcccgatcaag 29948924

                                                                            
Query: 494      aacagcagagctactgactgggtgtcgtacaggtcgctgagcgatgtcagctctcccaga 553
                |||||||| ||||  || ||||| || |||||||| || |  ||||| | |||||| |||
Sbjct: 29948925 aacagcagcgctatcgattgggtatcatacaggtcactcaatgatgttaactctcctaga 29948984

                            
Query: 554      gcaatgccagcc 565
                ||||| ||||||
Sbjct: 29948985 gcaatcccagcc 29948996



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 585      gctgggatgagaccgataagagttg 609
                ||||||||||||||||| |||||||
Sbjct: 29949102 gctgggatgagaccgatgagagttg 29949126



 Score = 40.1 bits (20), Expect = 8.3
 Identities = 33/36 (91%), Gaps = 1/36 (2%)
 Strand = Plus / Plus

                                                    
Query: 1        tggattgaatgaatctggtcatatatatacaaggat 36
                ||||||||||||||||| ||| ||||||||| ||||
Sbjct: 29948464 tggattgaatgaatctgatca-atatatacagggat 29948498

>gb|AC127269.3| Mus musculus BAC clone RP23-432B20 from chromosome 9, complete sequence
          Length = 212660

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 133    gatgggcattgtgcttcccagat 155
              |||||||||||||||||||||||
Sbjct: 160404 gatgggcattgtgcttcccagat 160426

>gb|AC156503.1| Mus musculus BAC clone RP23-272M11 from 9, complete sequence
          Length = 162078

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 133   gatgggcattgtgcttcccagat 155
             |||||||||||||||||||||||
Sbjct: 53631 gatgggcattgtgcttcccagat 53653

>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence
          Length = 3363523

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 331    cccaaatccaatgaagccgccgcat 355
              ||||||||| |||||||||||||||
Sbjct: 847795 cccaaatccgatgaagccgccgcat 847819

>emb|AL138956.17| Human DNA sequence from clone RP11-16D22 on chromosome 13 Contains the
             5' end of a novel gene, complete sequence
          Length = 165257

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 296   aaaccatgtgtcatccgcctc 316
             |||||||||||||||||||||
Sbjct: 41431 aaaccatgtgtcatccgcctc 41451

>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 474    ccgagacgacgccgatcaag 493
              ||||||||||||||||||||
Sbjct: 349223 ccgagacgacgccgatcaag 349204

>gb|AC121297.20| Mus musculus chromosome 1, clone RP23-326H11, complete sequence
          Length = 207496

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 422    atttctggtgccttttcttg 441
              ||||||||||||||||||||
Sbjct: 100603 atttctggtgccttttcttg 100622

>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome
          Length = 4501104

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 385    gtggctcctcttcggtgttcatga 408
              |||||| |||||||||||||||||
Sbjct: 750582 gtggctgctcttcggtgttcatga 750605

>gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete genome
          Length = 6260361

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 223     tccggcaggcgggtgatggg 242
               ||||||||||||||||||||
Sbjct: 1906763 tccggcaggcgggtgatggg 1906744

>gb|AC122733.11| Mus musculus chromosome 5, clone RP24-506B15, complete sequence
          Length = 157625

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 20   catatatatacaaggatttt 39
            ||||||||||||||||||||
Sbjct: 3052 catatatatacaaggatttt 3071

>gb|AC099698.14| Mus musculus chromosome 5, clone RP23-415O9, complete sequence
          Length = 220813

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 20     catatatatacaaggatttt 39
              ||||||||||||||||||||
Sbjct: 114148 catatatatacaaggatttt 114129

>emb|AL807387.10| Mouse DNA sequence from clone RP23-24J10 on chromosome 4, complete
              sequence
          Length = 241148

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 134    atgggcattgtgcttcccag 153
              ||||||||||||||||||||
Sbjct: 140568 atgggcattgtgcttcccag 140587

>gb|AC154884.15| Mus musculus chromosome 3, clone RP23-145H17, complete sequence
          Length = 231400

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 172    atgtggggggtgaccatgaaatgaaacagtgt 203
              ||||| |||| |||| ||||||||||||||||
Sbjct: 223436 atgtgtggggagaccttgaaatgaaacagtgt 223467

>emb|AL671880.15| Mouse DNA sequence from clone RP23-384C22 on chromosome X, complete
            sequence
          Length = 200535

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 20   catatatatacaaggatttt 39
            ||||||||||||||||||||
Sbjct: 9727 catatatatacaaggatttt 9746

>gb|AC115043.10| Mus musculus chromosome 3, clone RP24-294N3, complete sequence
          Length = 150336

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 172   atgtggggggtgaccatgaaatgaaacagtgt 203
             ||||| |||| |||| ||||||||||||||||
Sbjct: 45227 atgtgtggggagaccttgaaatgaaacagtgt 45196


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,696,335
Number of Sequences: 3902068
Number of extensions: 4696335
Number of successful extensions: 73613
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 73458
Number of HSP's gapped (non-prelim): 154
length of query: 609
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 586
effective length of database: 17,143,297,704
effective search space: 10045972454544
effective search space used: 10045972454544
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)