ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd14k01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|NM_192031.1| Oryza sativa (japonica cultivar-group), predic... 365 1e-97
2dbj|AK120629.1| Oryza sativa (japonica cultivar-group) cDNA clon... 365 1e-97
3dbj|AK063019.1| Oryza sativa (japonica cultivar-group) cDNA clon... 365 1e-97
4gb|AY106215.1| Zea mays PCO086004 mRNA sequence 280 6e-72
5dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 248 2e-62
6dbj|AP003335.4| Oryza sativa (japonica cultivar-group) genomic D... 248 2e-62
7dbj|AK062194.1| Oryza sativa (japonica cultivar-group) cDNA clon... 192 1e-45
8dbj|AK071536.1| Oryza sativa (japonica cultivar-group) cDNA clon... 125 2e-25
9gb|AC007005.3| Homo sapiens BAC clone RP11-532N23 from 2, comple... 50 0.010
10gb|AY770501.1| Sesamum indicum microsomal oleic acid desaturase ... 44 0.60
11gb|AC140724.4| Mus musculus chromosome 8, clone RP24-291N1, comp... 42 2.4
12gb|AC134323.3| Mus musculus BAC clone RP24-512P7 from chromosome... 42 2.4
13emb|Z86063.2|HS410B11 Human DNA sequence from clone RP3-410B11 o... 42 2.4
14gb|DQ366743.1| Uncultured Prochlorococcus marinus clone HOT0M-8F... 42 2.4
15emb|AL939122.1|SCO939122 Streptomyces coelicolor A3(2) complete ... 42 2.4
16gb|AC010051.9| Drosophila melanogaster 3L BAC RP98-3J2 (Roswell ... 42 2.4
17gb|AC010055.6| Drosophila melanogaster 3L BAC RP98-24H3 (Roswell... 42 2.4
18dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 42 2.4
19gb|AC157520.2| Mus musculus BAC clone RP23-229N21 from 6, comple... 42 2.4
20gb|AE003593.2| Drosophila melanogaster chromosome 3L, section 74... 42 2.4
21gb|AC093353.11| Mus musculus chromosome 10, clone RP23-19C22, co... 40 9.4
22gb|AC111060.5| Mus musculus chromosome 1, clone RP24-121I5, comp... 40 9.4
23gb|AY286122.1| Cyanidioschyzon merolae DBV201 chromosome 1, comp... 40 9.4
24gb|AC124585.3| Mus musculus BAC clone RP23-130P17 from chromosom... 40 9.4
25emb|AL356750.16| Human DNA sequence from clone RP11-374F3 on chr... 40 9.4
26emb|AL353671.6| Human DNA sequence from clone RP11-205M20 on chr... 40 9.4
27gb|AC161447.6| Mus musculus BAC clone RP24-333C14 from chromosom... 40 9.4
28gb|AC091862.3| Homo sapiens chromosome 5 clone CTD-2349K24, comp... 40 9.4
29gb|AC016561.7| Homo sapiens chromosome 5 clone CTC-466C4, comple... 40 9.4
30gb|AC099543.2| Homo sapiens chromosome 3 clone RP11-554B20, comp... 40 9.4
31gb|AC091805.16| Homo sapiens 12p BAC RP11-841C19 (Roswell Park C... 40 9.4
32gb|AC098680.3| Homo sapiens BAC clone RP11-600L4 from 4, complet... 40 9.4
33gb|AC157954.2| Pan troglodytes BAC clone CH251-514O14 from chrom... 40 9.4
34gb|AC154645.3| Mus musculus BAC clone RP23-282G11 from chromosom... 40 9.4
35gb|AC132373.4| Mus musculus BAC clone RP23-480H8 from 1, complet... 40 9.4
36gb|AC122506.4| Mus musculus BAC clone RP24-426J4 from 15, comple... 40 9.4
37gb|AC122263.5| Mus musculus BAC clone RP23-190O11 from 15, compl... 40 9.4
38gb|AC152950.2| Mus musculus 10 BAC RP23-138J18 (Roswell Park Can... 40 9.4

>ref|NM_192031.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 591

 Score =  365 bits (184), Expect = 1e-97
 Identities = 286/320 (89%)
 Strand = Plus / Minus

                                                                       
Query: 294 gcagcaggttcagcattcggaacataccaaccacgaattatctcaatggccttcttcctc 353
           |||||||||||||| || ||||||||||||||||| | |||||| |||||||||||||||
Sbjct: 581 gcagcaggttcagcgtttggaacataccaaccacggagtatctcgatggccttcttcctc 522

                                                                       
Query: 354 cttgcaagcctggacttgcgatgatctccagtattcctgtgcatggcgccaaccttcact 413
           || |||||   |||||||||||| |  |||||||||||||||||||||||||||||||||
Sbjct: 521 ctcgcaagaagggacttgcgatggttaccagtattcctgtgcatggcgccaaccttcact 462

                                                                       
Query: 414 gtcttgtcgatggctttgtatgcctcagagatcattttctctatttcaatgatttcttca 473
           |||||||| |||||||||||||||||||| |||  ||||||||||| |||||| ||||||
Sbjct: 461 gtcttgtcaatggctttgtatgcctcagaaatccatttctctatttgaatgatatcttca 402

                                                                       
Query: 474 ggttgggcatcggctttcttccgaagcttttcaagggctctgaaaaccttcttcatccgg 533
           |||  |||||| |||||||| |  ||||||||||||||| | |||||||||||||||| |
Sbjct: 401 ggtgtggcatcagctttctttctcagcttttcaagggctttcaaaaccttcttcatcctg 342

                                                                       
Query: 534 gtgcgcatctcggccttgcgggcatggttgcgaatgcggtgtctgtcattctggcgctcc 593
           |||||||||||||||||||| ||||||||||| |||||||| | ||| ||||| ||||||
Sbjct: 341 gtgcgcatctcggccttgcgtgcatggttgcggatgcggtgccggtcgttctgccgctcc 282

                               
Query: 594 ctcttcttcaccgagtccgg 613
           |||||||| |||||||||||
Sbjct: 281 ctcttcttgaccgagtccgg 262



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                       
Query: 643 cgcacaccacctgcagccccctcctnctcaaccttcccgtcgac 686
           |||||||||||| ||| |||||||| ||| |||| |||| ||||
Sbjct: 226 cgcacaccacctccagtcccctcctcctccacctccccgacgac 183



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>dbj|AK120629.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013153D21, full
           insert sequence
          Length = 915

 Score =  365 bits (184), Expect = 1e-97
 Identities = 286/320 (89%)
 Strand = Plus / Minus

                                                                       
Query: 294 gcagcaggttcagcattcggaacataccaaccacgaattatctcaatggccttcttcctc 353
           |||||||||||||| || ||||||||||||||||| | |||||| |||||||||||||||
Sbjct: 616 gcagcaggttcagcgtttggaacataccaaccacggagtatctcgatggccttcttcctc 557

                                                                       
Query: 354 cttgcaagcctggacttgcgatgatctccagtattcctgtgcatggcgccaaccttcact 413
           || |||||   |||||||||||| |  |||||||||||||||||||||||||||||||||
Sbjct: 556 ctcgcaagaagggacttgcgatggttaccagtattcctgtgcatggcgccaaccttcact 497

                                                                       
Query: 414 gtcttgtcgatggctttgtatgcctcagagatcattttctctatttcaatgatttcttca 473
           |||||||| |||||||||||||||||||| |||  ||||||||||| |||||| ||||||
Sbjct: 496 gtcttgtcaatggctttgtatgcctcagaaatccatttctctatttgaatgatatcttca 437

                                                                       
Query: 474 ggttgggcatcggctttcttccgaagcttttcaagggctctgaaaaccttcttcatccgg 533
           |||  |||||| |||||||| |  ||||||||||||||| | |||||||||||||||| |
Sbjct: 436 ggtgtggcatcagctttctttctcagcttttcaagggctttcaaaaccttcttcatcctg 377

                                                                       
Query: 534 gtgcgcatctcggccttgcgggcatggttgcgaatgcggtgtctgtcattctggcgctcc 593
           |||||||||||||||||||| ||||||||||| |||||||| | ||| ||||| ||||||
Sbjct: 376 gtgcgcatctcggccttgcgtgcatggttgcggatgcggtgccggtcgttctgccgctcc 317

                               
Query: 594 ctcttcttcaccgagtccgg 613
           |||||||| |||||||||||
Sbjct: 316 ctcttcttgaccgagtccgg 297



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                       
Query: 643 cgcacaccacctgcagccccctcctnctcaaccttcccgtcgac 686
           |||||||||||| ||| |||||||| ||| |||| |||| ||||
Sbjct: 261 cgcacaccacctccagtcccctcctcctccacctccccgacgac 218



 Score = 40.1 bits (20), Expect = 9.4
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Minus

                                       
Query: 207 aacatatgc-tgtccaaaattggcaaga 233
           ||||||||| ||||||||||||||||||
Sbjct: 705 aacatatgcatgtccaaaattggcaaga 678



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>dbj|AK063019.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-110-B01, full
           insert sequence
          Length = 727

 Score =  365 bits (184), Expect = 1e-97
 Identities = 286/320 (89%)
 Strand = Plus / Minus

                                                                       
Query: 294 gcagcaggttcagcattcggaacataccaaccacgaattatctcaatggccttcttcctc 353
           |||||||||||||| || ||||||||||||||||| | |||||| |||||||||||||||
Sbjct: 613 gcagcaggttcagcgtttggaacataccaaccacggagtatctcgatggccttcttcctc 554

                                                                       
Query: 354 cttgcaagcctggacttgcgatgatctccagtattcctgtgcatggcgccaaccttcact 413
           || |||||   |||||||||||| |  |||||||||||||||||||||||||||||||||
Sbjct: 553 ctcgcaagaagggacttgcgatggttaccagtattcctgtgcatggcgccaaccttcact 494

                                                                       
Query: 414 gtcttgtcgatggctttgtatgcctcagagatcattttctctatttcaatgatttcttca 473
           |||||||| |||||||||||||||||||| |||  ||||||||||| |||||| ||||||
Sbjct: 493 gtcttgtcaatggctttgtatgcctcagaaatccatttctctatttgaatgatatcttca 434

                                                                       
Query: 474 ggttgggcatcggctttcttccgaagcttttcaagggctctgaaaaccttcttcatccgg 533
           |||  |||||| |||||||| |  ||||||||||||||| | |||||||||||||||| |
Sbjct: 433 ggtgtggcatcagctttctttctcagcttttcaagggctttcaaaaccttcttcatcctg 374

                                                                       
Query: 534 gtgcgcatctcggccttgcgggcatggttgcgaatgcggtgtctgtcattctggcgctcc 593
           |||||||||||||||||||| ||||||||||| |||||||| | ||| ||||| ||||||
Sbjct: 373 gtgcgcatctcggccttgcgtgcatggttgcggatgcggtgccggtcgttctgccgctcc 314

                               
Query: 594 ctcttcttcaccgagtccgg 613
           |||||||| |||||||||||
Sbjct: 313 ctcttcttgaccgagtccgg 294



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                       
Query: 643 cgcacaccacctgcagccccctcctnctcaaccttcccgtcgac 686
           |||||||||||| ||| |||||||| ||| |||| |||| ||||
Sbjct: 258 cgcacaccacctccagtcccctcctcctccacctccccgacgac 215



 Score = 40.1 bits (20), Expect = 9.4
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Minus

                                       
Query: 207 aacatatgc-tgtccaaaattggcaaga 233
           ||||||||| ||||||||||||||||||
Sbjct: 702 aacatatgcatgtccaaaattggcaaga 675



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>gb|AY106215.1| Zea mays PCO086004 mRNA sequence
          Length = 859

 Score =  280 bits (141), Expect = 6e-72
 Identities = 273/317 (86%)
 Strand = Plus / Minus

                                                                       
Query: 298 caggttcagcattcggaacataccaaccacgaattatctcaatggccttcttcctccttg 357
           |||||||||| || || |||||||||||||| | |||||| |||||||||||||||||||
Sbjct: 684 caggttcagcgtttgggacataccaaccacggagtatctcgatggccttcttcctccttg 625

                                                                       
Query: 358 caagcctggacttgcgatgatctccagtattcctgtgcatggcgccaaccttcactgtct 417
           | || |  ||||| ||||| |   | || ||||| |||||||||||||||||||| ||||
Sbjct: 624 ccagtcgagacttccgatggttcgccgtgttcctatgcatggcgccaaccttcaccgtct 565

                                                                       
Query: 418 tgtcgatggctttgtatgcctcagagatcattttctctatttcaatgatttcttcaggtt 477
           |||||||||||||||||||||||| |||||  |||||||| ||||| ||||||||||| |
Sbjct: 564 tgtcgatggctttgtatgcctcagcgatcagcttctctatctcaattatttcttcaggct 505

                                                                       
Query: 478 gggcatcggctttcttccgaagcttttcaagggctctgaaaaccttcttcatccgggtgc 537
           | || || | |||||||| |||||||||||| ||||| || ||||| |||||||  ||||
Sbjct: 504 gcgcgtcaggtttcttcctaagcttttcaagagctcttaagacctttttcatcctagtgc 445

                                                                       
Query: 538 gcatctcggccttgcgggcatggttgcgaatgcggtgtctgtcattctggcgctccctct 597
           |||||||||||||||| || || ||||| ||||||||  |||| ||||||||||||||||
Sbjct: 444 gcatctcggccttgcgcgcgtgattgcggatgcggtgcttgtcgttctggcgctccctct 385

                            
Query: 598 tcttcaccgagtccggc 614
           |||| ||||||||||||
Sbjct: 384 tcttaaccgagtccggc 368



 Score = 48.1 bits (24), Expect = 0.038
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                  
Query: 643 cgcacaccacctgcagccccctcctnctcaaccttcccg 681
           |||||||||||| |||||||| ||  |||||||||||||
Sbjct: 348 cgcacaccacctccagcccccgccgtctcaaccttcccg 310



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  248 bits (125), Expect = 2e-62
 Identities = 203/229 (88%)
 Strand = Plus / Minus

                                                                            
Query: 294      gcagcaggttcagcattcggaacataccaaccacgaattatctcaatggccttcttcctc 353
                |||||||||||||| || ||||||||||||||||| | |||||| |||||||||||||||
Sbjct: 27917295 gcagcaggttcagcgtttggaacataccaaccacggagtatctcgatggccttcttcctc 27917236

                                                                            
Query: 354      cttgcaagcctggacttgcgatgatctccagtattcctgtgcatggcgccaaccttcact 413
                || |||||   |||||||||||| |  |||||||||||||||||||||||||||||||||
Sbjct: 27917235 ctcgcaagaagggacttgcgatggttaccagtattcctgtgcatggcgccaaccttcact 27917176

                                                                            
Query: 414      gtcttgtcgatggctttgtatgcctcagagatcattttctctatttcaatgatttcttca 473
                |||||||| |||||||||||||||||||| |||  ||||||||||| |||||| ||||||
Sbjct: 27917175 gtcttgtcaatggctttgtatgcctcagaaatccatttctctatttgaatgatatcttca 27917116

                                                                 
Query: 474      ggttgggcatcggctttcttccgaagcttttcaagggctctgaaaacct 522
                |||  |||||| |||||||| |  ||||||||||||||| | |||||||
Sbjct: 27917115 ggtgtggcatcagctttctttctcagcttttcaagggctttcaaaacct 27917067



 Score =  125 bits (63), Expect = 2e-25
 Identities = 87/95 (91%)
 Strand = Plus / Minus

                                                                            
Query: 519      accttcttcatccgggtgcgcatctcggccttgcgggcatggttgcgaatgcggtgtctg 578
                ||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||| | |
Sbjct: 27916044 accttcttcatcctggtgcgcatctcggccttgcgtgcatggttgcggatgcggtgccgg 27915985

                                                   
Query: 579      tcattctggcgctccctcttcttcaccgagtccgg 613
                || ||||| |||||||||||||| |||||||||||
Sbjct: 27915984 tcgttctgccgctccctcttcttgaccgagtccgg 27915950



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                            
Query: 643      cgcacaccacctgcagccccctcctnctcaaccttcccgtcgac 686
                |||||||||||| ||| |||||||| ||| |||| |||| ||||
Sbjct: 27915914 cgcacaccacctccagtcccctcctcctccacctccccgacgac 27915871



 Score = 40.1 bits (20), Expect = 9.4
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Minus

                                            
Query: 207      aacatatgc-tgtccaaaattggcaaga 233
                ||||||||| ||||||||||||||||||
Sbjct: 27917384 aacatatgcatgtccaaaattggcaaga 27917357



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>dbj|AP003335.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1144G04
          Length = 194459

 Score =  248 bits (125), Expect = 2e-62
 Identities = 203/229 (88%)
 Strand = Plus / Minus

                                                                          
Query: 294    gcagcaggttcagcattcggaacataccaaccacgaattatctcaatggccttcttcctc 353
              |||||||||||||| || ||||||||||||||||| | |||||| |||||||||||||||
Sbjct: 103976 gcagcaggttcagcgtttggaacataccaaccacggagtatctcgatggccttcttcctc 103917

                                                                          
Query: 354    cttgcaagcctggacttgcgatgatctccagtattcctgtgcatggcgccaaccttcact 413
              || |||||   |||||||||||| |  |||||||||||||||||||||||||||||||||
Sbjct: 103916 ctcgcaagaagggacttgcgatggttaccagtattcctgtgcatggcgccaaccttcact 103857

                                                                          
Query: 414    gtcttgtcgatggctttgtatgcctcagagatcattttctctatttcaatgatttcttca 473
              |||||||| |||||||||||||||||||| |||  ||||||||||| |||||| ||||||
Sbjct: 103856 gtcttgtcaatggctttgtatgcctcagaaatccatttctctatttgaatgatatcttca 103797

                                                               
Query: 474    ggttgggcatcggctttcttccgaagcttttcaagggctctgaaaacct 522
              |||  |||||| |||||||| |  ||||||||||||||| | |||||||
Sbjct: 103796 ggtgtggcatcagctttctttctcagcttttcaagggctttcaaaacct 103748



 Score =  125 bits (63), Expect = 2e-25
 Identities = 87/95 (91%)
 Strand = Plus / Minus

                                                                          
Query: 519    accttcttcatccgggtgcgcatctcggccttgcgggcatggttgcgaatgcggtgtctg 578
              ||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||| | |
Sbjct: 102725 accttcttcatcctggtgcgcatctcggccttgcgtgcatggttgcggatgcggtgccgg 102666

                                                 
Query: 579    tcattctggcgctccctcttcttcaccgagtccgg 613
              || ||||| |||||||||||||| |||||||||||
Sbjct: 102665 tcgttctgccgctccctcttcttgaccgagtccgg 102631



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                          
Query: 643    cgcacaccacctgcagccccctcctnctcaaccttcccgtcgac 686
              |||||||||||| ||| |||||||| ||| |||| |||| ||||
Sbjct: 102595 cgcacaccacctccagtcccctcctcctccacctccccgacgac 102552



 Score = 40.1 bits (20), Expect = 9.4
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Minus

                                          
Query: 207    aacatatgc-tgtccaaaattggcaaga 233
              ||||||||| ||||||||||||||||||
Sbjct: 104065 aacatatgcatgtccaaaattggcaaga 104038



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>dbj|AK062194.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-F06, full
           insert sequence
          Length = 455

 Score =  192 bits (97), Expect = 1e-45
 Identities = 136/149 (91%)
 Strand = Plus / Minus

                                                                       
Query: 294 gcagcaggttcagcattcggaacataccaaccacgaattatctcaatggccttcttcctc 353
           |||||||||||||| || ||||||||||||||||| | |||||| |||||||||||||||
Sbjct: 161 gcagcaggttcagcgtttggaacataccaaccacggagtatctcgatggccttcttcctc 102

                                                                       
Query: 354 cttgcaagcctggacttgcgatgatctccagtattcctgtgcatggcgccaaccttcact 413
           || |||||   |||||||||||| |  |||||||||||||||||||||||||||||||||
Sbjct: 101 ctcgcaagaagggacttgcgatggttaccagtattcctgtgcatggcgccaaccttcact 42

                                        
Query: 414 gtcttgtcgatggctttgtatgcctcaga 442
           |||||||| ||||||||||||||||||||
Sbjct: 41  gtcttgtcaatggctttgtatgcctcaga 13



 Score = 40.1 bits (20), Expect = 9.4
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Minus

                                       
Query: 207 aacatatgc-tgtccaaaattggcaaga 233
           ||||||||| ||||||||||||||||||
Sbjct: 250 aacatatgcatgtccaaaattggcaaga 223



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>dbj|AK071536.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023101N15, full
           insert sequence
          Length = 651

 Score =  125 bits (63), Expect = 2e-25
 Identities = 87/95 (91%)
 Strand = Plus / Minus

                                                                       
Query: 519 accttcttcatccgggtgcgcatctcggccttgcgggcatggttgcgaatgcggtgtctg 578
           ||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||| | |
Sbjct: 257 accttcttcatcctggtgcgcatctcggccttgcgtgcatggttgcggatgcggtgccgg 198

                                              
Query: 579 tcattctggcgctccctcttcttcaccgagtccgg 613
           || ||||| |||||||||||||| |||||||||||
Sbjct: 197 tcgttctgccgctccctcttcttgaccgagtccgg 163



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                       
Query: 643 cgcacaccacctgcagccccctcctnctcaaccttcccgtcgac 686
           |||||||||||| ||| |||||||| ||| |||| |||| ||||
Sbjct: 127 cgcacaccacctccagtcccctcctcctccacctccccgacgac 84



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>gb|AC007005.3| Homo sapiens BAC clone RP11-532N23 from 2, complete sequence
          Length = 167776

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                       
Query: 332    tatctcaatggccttcttcctcctt 356
              |||||||||||||||||||||||||
Sbjct: 166108 tatctcaatggccttcttcctcctt 166084



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>gb|AY770501.1| Sesamum indicum microsomal oleic acid desaturase gene, complete cds
          Length = 3762

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 49   tatttcggtttgaagttttaca 70
            ||||||||||||||||||||||
Sbjct: 1440 tatttcggtttgaagttttaca 1461



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>gb|AC140724.4| Mus musculus chromosome 8, clone RP24-291N1, complete sequence
          Length = 159182

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 439   cagagatcattttctctattt 459
             |||||||||||||||||||||
Sbjct: 55397 cagagatcattttctctattt 55417



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>gb|AC134323.3| Mus musculus BAC clone RP24-512P7 from chromosome 8, complete sequence
          Length = 176667

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 439    cagagatcattttctctattt 459
              |||||||||||||||||||||
Sbjct: 175097 cagagatcattttctctattt 175077



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>emb|Z86063.2|HS410B11 Human DNA sequence from clone RP3-410B11 on chromosome Xp22.11-22.2
             Contains the 3' end of a novel gene, complete sequence
          Length = 58498

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 335   ctcaatggccttcttcctcct 355
             |||||||||||||||||||||
Sbjct: 13755 ctcaatggccttcttcctcct 13775



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>gb|DQ366743.1| Uncultured Prochlorococcus marinus clone HOT0M-8F9 genomic sequence
          Length = 27928

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 453   tctatttcaatgatttcttca 473
             |||||||||||||||||||||
Sbjct: 18648 tctatttcaatgatttcttca 18668



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>emb|AL939122.1|SCO939122 Streptomyces coelicolor A3(2) complete genome; segment 19/29
          Length = 311000

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 629    gggcggctcggcggcgcacaccacc 653
              ||||||||||||||||| |||||||
Sbjct: 204693 gggcggctcggcggcgcgcaccacc 204669



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>gb|AC010051.9| Drosophila melanogaster 3L BAC RP98-3J2 (Roswell Park Cancer
            Institute Drosophila BAC Library) complete sequence
          Length = 184424

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 564  cgaatgcggtgtctgtcattc 584
            |||||||||||||||||||||
Sbjct: 7400 cgaatgcggtgtctgtcattc 7380



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>gb|AC010055.6| Drosophila melanogaster 3L BAC RP98-24H3 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 163098

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 564    cgaatgcggtgtctgtcattc 584
              |||||||||||||||||||||
Sbjct: 144096 cgaatgcggtgtctgtcattc 144076



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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 629     gggcggctcggcggcgcacaccacc 653
               ||||||||||||||||| |||||||
Sbjct: 3910496 gggcggctcggcggcgcgcaccacc 3910520



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>gb|AC157520.2| Mus musculus BAC clone RP23-229N21 from 6, complete sequence
          Length = 196037

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 448    ttttctctatttcaatgatttcttc 472
              |||||||||| ||||||||||||||
Sbjct: 166833 ttttctctatgtcaatgatttcttc 166857



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>gb|AE003593.2| Drosophila melanogaster chromosome 3L, section 74 of 83 of the complete
              sequence
          Length = 313157

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 564    cgaatgcggtgtctgtcattc 584
              |||||||||||||||||||||
Sbjct: 141281 cgaatgcggtgtctgtcattc 141301



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>gb|AC093353.11| Mus musculus chromosome 10, clone RP23-19C22, complete sequence
          Length = 188921

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 453   tctatttcaatgatttcttcaggt 476
             |||||||||||| |||||||||||
Sbjct: 54497 tctatttcaatgttttcttcaggt 54474



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>gb|AC111060.5| Mus musculus chromosome 1, clone RP24-121I5, complete sequence
          Length = 138419

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 242   aagaaaagctgctgcaattt 261
             ||||||||||||||||||||
Sbjct: 15020 aagaaaagctgctgcaattt 15039



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>gb|AY286122.1| Cyanidioschyzon merolae DBV201 chromosome 1, complete sequence
          Length = 422021

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 289    cagctgcagcaggttcagca 308
              ||||||||||||||||||||
Sbjct: 325163 cagctgcagcaggttcagca 325144



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>gb|AC124585.3| Mus musculus BAC clone RP23-130P17 from chromosome 10, complete sequence
          Length = 198030

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 453    tctatttcaatgatttcttcaggt 476
              |||||||||||| |||||||||||
Sbjct: 167318 tctatttcaatgttttcttcaggt 167295



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>emb|AL356750.16| Human DNA sequence from clone RP11-374F3 on chromosome 13 Contains the
             KATNAL1 gene for katanin p60 subunit A-like 1, a
             peroxiredoxin 2 (PRDX2) pseudogene, two novel genes and
             two CpG islands, complete sequence
          Length = 182303

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 453   tctatttcaatgatttcttc 472
             ||||||||||||||||||||
Sbjct: 26193 tctatttcaatgatttcttc 26174



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>emb|AL353671.6| Human DNA sequence from clone RP11-205M20 on chromosome 9 Contains the 5'
              end of the gene for DEAD/H (Asp-Glu-Ala-Asp/His) box
              polypeptide (RIG-I), the gene for tumor protein p53-binding
              protein (TP53BPL), a novel gene, a DNA fragmentation
              factor, 40kDa, beta polypeptide (caspase-activated DNase)
              (DFFB) (CAD, CPAN, DFF40) pseudogene, a novel gene
              (FLJ25547), the  NDUFB6 gene for NADH dehydrogenase
              (ubiquinone) 1 beta subcomplex, 6, 17kDa (B17), and a CpG
              island, complete sequence
          Length = 155585

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 338    aatggccttcttcctccttg 357
              ||||||||||||||||||||
Sbjct: 134604 aatggccttcttcctccttg 134623



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>gb|AC161447.6| Mus musculus BAC clone RP24-333C14 from chromosome 17, complete sequence
          Length = 182569

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 59     tgaagttttacaacagagga 78
              ||||||||||||||||||||
Sbjct: 160679 tgaagttttacaacagagga 160698



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>gb|AC091862.3| Homo sapiens chromosome 5 clone CTD-2349K24, complete sequence
          Length = 119395

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 61    aagttttacaacagaggaatgtaa 84
             |||||||| |||||||||||||||
Sbjct: 80377 aagttttataacagaggaatgtaa 80400



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>gb|AC016561.7| Homo sapiens chromosome 5 clone CTC-466C4, complete sequence
          Length = 95105

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 61    aagttttacaacagaggaatgtaa 84
             |||||||| |||||||||||||||
Sbjct: 82039 aagttttataacagaggaatgtaa 82016



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>gb|AC099543.2| Homo sapiens chromosome 3 clone RP11-554B20, complete sequence
          Length = 156107

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 434   tgcctcagagatcattttct 453
             ||||||||||||||||||||
Sbjct: 21767 tgcctcagagatcattttct 21748



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>gb|AC091805.16| Homo sapiens 12p BAC RP11-841C19 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 177115

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 436    cctcagagatcattttctct 455
              ||||||||||||||||||||
Sbjct: 170690 cctcagagatcattttctct 170671



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>gb|AC098680.3| Homo sapiens BAC clone RP11-600L4 from 4, complete sequence
          Length = 180918

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 234   tgtgatgaaagaaaagctgc 253
             ||||||||||||||||||||
Sbjct: 91681 tgtgatgaaagaaaagctgc 91700



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>gb|AC157954.2| Pan troglodytes BAC clone CH251-514O14 from chromosome unknown, complete
              sequence
          Length = 210950

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 453    tctatttcaatgatttcttc 472
              ||||||||||||||||||||
Sbjct: 112522 tctatttcaatgatttcttc 112541



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>gb|AC154645.3| Mus musculus BAC clone RP23-282G11 from chromosome 9, complete sequence
          Length = 210202

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 266   tgacaactcccccagaaact 285
             ||||||||||||||||||||
Sbjct: 49771 tgacaactcccccagaaact 49752



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>gb|AC132373.4| Mus musculus BAC clone RP23-480H8 from 1, complete sequence
          Length = 192562

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 242   aagaaaagctgctgcaattt 261
             ||||||||||||||||||||
Sbjct: 27064 aagaaaagctgctgcaattt 27045



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>gb|AC122506.4| Mus musculus BAC clone RP24-426J4 from 15, complete sequence
          Length = 166555

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 237    gatgaaagaaaagctgctgc 256
              ||||||||||||||||||||
Sbjct: 166494 gatgaaagaaaagctgctgc 166475



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>gb|AC122263.5| Mus musculus BAC clone RP23-190O11 from 15, complete sequence
          Length = 207234

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 237    gatgaaagaaaagctgctgc 256
              ||||||||||||||||||||
Sbjct: 201475 gatgaaagaaaagctgctgc 201494



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>gb|AC152950.2| Mus musculus 10 BAC RP23-138J18 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 181465

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 451    tctctatttcaatgatttct 470
              ||||||||||||||||||||
Sbjct: 106142 tctctatttcaatgatttct 106123


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,293,044
Number of Sequences: 3902068
Number of extensions: 6293044
Number of successful extensions: 136205
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 136032
Number of HSP's gapped (non-prelim): 173
length of query: 686
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 663
effective length of database: 17,143,297,704
effective search space: 11366006377752
effective search space used: 11366006377752
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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