| Clone Name | rbasd14k01 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_192031.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 591 Score = 365 bits (184), Expect = 1e-97 Identities = 286/320 (89%) Strand = Plus / Minus Query: 294 gcagcaggttcagcattcggaacataccaaccacgaattatctcaatggccttcttcctc 353 |||||||||||||| || ||||||||||||||||| | |||||| ||||||||||||||| Sbjct: 581 gcagcaggttcagcgtttggaacataccaaccacggagtatctcgatggccttcttcctc 522 Query: 354 cttgcaagcctggacttgcgatgatctccagtattcctgtgcatggcgccaaccttcact 413 || ||||| |||||||||||| | ||||||||||||||||||||||||||||||||| Sbjct: 521 ctcgcaagaagggacttgcgatggttaccagtattcctgtgcatggcgccaaccttcact 462 Query: 414 gtcttgtcgatggctttgtatgcctcagagatcattttctctatttcaatgatttcttca 473 |||||||| |||||||||||||||||||| ||| ||||||||||| |||||| |||||| Sbjct: 461 gtcttgtcaatggctttgtatgcctcagaaatccatttctctatttgaatgatatcttca 402 Query: 474 ggttgggcatcggctttcttccgaagcttttcaagggctctgaaaaccttcttcatccgg 533 ||| |||||| |||||||| | ||||||||||||||| | |||||||||||||||| | Sbjct: 401 ggtgtggcatcagctttctttctcagcttttcaagggctttcaaaaccttcttcatcctg 342 Query: 534 gtgcgcatctcggccttgcgggcatggttgcgaatgcggtgtctgtcattctggcgctcc 593 |||||||||||||||||||| ||||||||||| |||||||| | ||| ||||| |||||| Sbjct: 341 gtgcgcatctcggccttgcgtgcatggttgcggatgcggtgccggtcgttctgccgctcc 282 Query: 594 ctcttcttcaccgagtccgg 613 |||||||| ||||||||||| Sbjct: 281 ctcttcttgaccgagtccgg 262 Score = 42.1 bits (21), Expect = 2.4 Identities = 38/44 (86%) Strand = Plus / Minus Query: 643 cgcacaccacctgcagccccctcctnctcaaccttcccgtcgac 686 |||||||||||| ||| |||||||| ||| |||| |||| |||| Sbjct: 226 cgcacaccacctccagtcccctcctcctccacctccccgacgac 183
>dbj|AK120629.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013153D21, full insert sequence Length = 915 Score = 365 bits (184), Expect = 1e-97 Identities = 286/320 (89%) Strand = Plus / Minus Query: 294 gcagcaggttcagcattcggaacataccaaccacgaattatctcaatggccttcttcctc 353 |||||||||||||| || ||||||||||||||||| | |||||| ||||||||||||||| Sbjct: 616 gcagcaggttcagcgtttggaacataccaaccacggagtatctcgatggccttcttcctc 557 Query: 354 cttgcaagcctggacttgcgatgatctccagtattcctgtgcatggcgccaaccttcact 413 || ||||| |||||||||||| | ||||||||||||||||||||||||||||||||| Sbjct: 556 ctcgcaagaagggacttgcgatggttaccagtattcctgtgcatggcgccaaccttcact 497 Query: 414 gtcttgtcgatggctttgtatgcctcagagatcattttctctatttcaatgatttcttca 473 |||||||| |||||||||||||||||||| ||| ||||||||||| |||||| |||||| Sbjct: 496 gtcttgtcaatggctttgtatgcctcagaaatccatttctctatttgaatgatatcttca 437 Query: 474 ggttgggcatcggctttcttccgaagcttttcaagggctctgaaaaccttcttcatccgg 533 ||| |||||| |||||||| | ||||||||||||||| | |||||||||||||||| | Sbjct: 436 ggtgtggcatcagctttctttctcagcttttcaagggctttcaaaaccttcttcatcctg 377 Query: 534 gtgcgcatctcggccttgcgggcatggttgcgaatgcggtgtctgtcattctggcgctcc 593 |||||||||||||||||||| ||||||||||| |||||||| | ||| ||||| |||||| Sbjct: 376 gtgcgcatctcggccttgcgtgcatggttgcggatgcggtgccggtcgttctgccgctcc 317 Query: 594 ctcttcttcaccgagtccgg 613 |||||||| ||||||||||| Sbjct: 316 ctcttcttgaccgagtccgg 297 Score = 42.1 bits (21), Expect = 2.4 Identities = 38/44 (86%) Strand = Plus / Minus Query: 643 cgcacaccacctgcagccccctcctnctcaaccttcccgtcgac 686 |||||||||||| ||| |||||||| ||| |||| |||| |||| Sbjct: 261 cgcacaccacctccagtcccctcctcctccacctccccgacgac 218 Score = 40.1 bits (20), Expect = 9.4 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Minus Query: 207 aacatatgc-tgtccaaaattggcaaga 233 ||||||||| |||||||||||||||||| Sbjct: 705 aacatatgcatgtccaaaattggcaaga 678
>dbj|AK063019.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-110-B01, full insert sequence Length = 727 Score = 365 bits (184), Expect = 1e-97 Identities = 286/320 (89%) Strand = Plus / Minus Query: 294 gcagcaggttcagcattcggaacataccaaccacgaattatctcaatggccttcttcctc 353 |||||||||||||| || ||||||||||||||||| | |||||| ||||||||||||||| Sbjct: 613 gcagcaggttcagcgtttggaacataccaaccacggagtatctcgatggccttcttcctc 554 Query: 354 cttgcaagcctggacttgcgatgatctccagtattcctgtgcatggcgccaaccttcact 413 || ||||| |||||||||||| | ||||||||||||||||||||||||||||||||| Sbjct: 553 ctcgcaagaagggacttgcgatggttaccagtattcctgtgcatggcgccaaccttcact 494 Query: 414 gtcttgtcgatggctttgtatgcctcagagatcattttctctatttcaatgatttcttca 473 |||||||| |||||||||||||||||||| ||| ||||||||||| |||||| |||||| Sbjct: 493 gtcttgtcaatggctttgtatgcctcagaaatccatttctctatttgaatgatatcttca 434 Query: 474 ggttgggcatcggctttcttccgaagcttttcaagggctctgaaaaccttcttcatccgg 533 ||| |||||| |||||||| | ||||||||||||||| | |||||||||||||||| | Sbjct: 433 ggtgtggcatcagctttctttctcagcttttcaagggctttcaaaaccttcttcatcctg 374 Query: 534 gtgcgcatctcggccttgcgggcatggttgcgaatgcggtgtctgtcattctggcgctcc 593 |||||||||||||||||||| ||||||||||| |||||||| | ||| ||||| |||||| Sbjct: 373 gtgcgcatctcggccttgcgtgcatggttgcggatgcggtgccggtcgttctgccgctcc 314 Query: 594 ctcttcttcaccgagtccgg 613 |||||||| ||||||||||| Sbjct: 313 ctcttcttgaccgagtccgg 294 Score = 42.1 bits (21), Expect = 2.4 Identities = 38/44 (86%) Strand = Plus / Minus Query: 643 cgcacaccacctgcagccccctcctnctcaaccttcccgtcgac 686 |||||||||||| ||| |||||||| ||| |||| |||| |||| Sbjct: 258 cgcacaccacctccagtcccctcctcctccacctccccgacgac 215 Score = 40.1 bits (20), Expect = 9.4 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Minus Query: 207 aacatatgc-tgtccaaaattggcaaga 233 ||||||||| |||||||||||||||||| Sbjct: 702 aacatatgcatgtccaaaattggcaaga 675
>gb|AY106215.1| Zea mays PCO086004 mRNA sequence Length = 859 Score = 280 bits (141), Expect = 6e-72 Identities = 273/317 (86%) Strand = Plus / Minus Query: 298 caggttcagcattcggaacataccaaccacgaattatctcaatggccttcttcctccttg 357 |||||||||| || || |||||||||||||| | |||||| ||||||||||||||||||| Sbjct: 684 caggttcagcgtttgggacataccaaccacggagtatctcgatggccttcttcctccttg 625 Query: 358 caagcctggacttgcgatgatctccagtattcctgtgcatggcgccaaccttcactgtct 417 | || | ||||| ||||| | | || ||||| |||||||||||||||||||| |||| Sbjct: 624 ccagtcgagacttccgatggttcgccgtgttcctatgcatggcgccaaccttcaccgtct 565 Query: 418 tgtcgatggctttgtatgcctcagagatcattttctctatttcaatgatttcttcaggtt 477 |||||||||||||||||||||||| ||||| |||||||| ||||| ||||||||||| | Sbjct: 564 tgtcgatggctttgtatgcctcagcgatcagcttctctatctcaattatttcttcaggct 505 Query: 478 gggcatcggctttcttccgaagcttttcaagggctctgaaaaccttcttcatccgggtgc 537 | || || | |||||||| |||||||||||| ||||| || ||||| ||||||| |||| Sbjct: 504 gcgcgtcaggtttcttcctaagcttttcaagagctcttaagacctttttcatcctagtgc 445 Query: 538 gcatctcggccttgcgggcatggttgcgaatgcggtgtctgtcattctggcgctccctct 597 |||||||||||||||| || || ||||| |||||||| |||| |||||||||||||||| Sbjct: 444 gcatctcggccttgcgcgcgtgattgcggatgcggtgcttgtcgttctggcgctccctct 385 Query: 598 tcttcaccgagtccggc 614 |||| |||||||||||| Sbjct: 384 tcttaaccgagtccggc 368 Score = 48.1 bits (24), Expect = 0.038 Identities = 35/39 (89%) Strand = Plus / Minus Query: 643 cgcacaccacctgcagccccctcctnctcaaccttcccg 681 |||||||||||| |||||||| || ||||||||||||| Sbjct: 348 cgcacaccacctccagcccccgccgtctcaaccttcccg 310
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 248 bits (125), Expect = 2e-62 Identities = 203/229 (88%) Strand = Plus / Minus Query: 294 gcagcaggttcagcattcggaacataccaaccacgaattatctcaatggccttcttcctc 353 |||||||||||||| || ||||||||||||||||| | |||||| ||||||||||||||| Sbjct: 27917295 gcagcaggttcagcgtttggaacataccaaccacggagtatctcgatggccttcttcctc 27917236 Query: 354 cttgcaagcctggacttgcgatgatctccagtattcctgtgcatggcgccaaccttcact 413 || ||||| |||||||||||| | ||||||||||||||||||||||||||||||||| Sbjct: 27917235 ctcgcaagaagggacttgcgatggttaccagtattcctgtgcatggcgccaaccttcact 27917176 Query: 414 gtcttgtcgatggctttgtatgcctcagagatcattttctctatttcaatgatttcttca 473 |||||||| |||||||||||||||||||| ||| ||||||||||| |||||| |||||| Sbjct: 27917175 gtcttgtcaatggctttgtatgcctcagaaatccatttctctatttgaatgatatcttca 27917116 Query: 474 ggttgggcatcggctttcttccgaagcttttcaagggctctgaaaacct 522 ||| |||||| |||||||| | ||||||||||||||| | ||||||| Sbjct: 27917115 ggtgtggcatcagctttctttctcagcttttcaagggctttcaaaacct 27917067 Score = 125 bits (63), Expect = 2e-25 Identities = 87/95 (91%) Strand = Plus / Minus Query: 519 accttcttcatccgggtgcgcatctcggccttgcgggcatggttgcgaatgcggtgtctg 578 ||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||| | | Sbjct: 27916044 accttcttcatcctggtgcgcatctcggccttgcgtgcatggttgcggatgcggtgccgg 27915985 Query: 579 tcattctggcgctccctcttcttcaccgagtccgg 613 || ||||| |||||||||||||| ||||||||||| Sbjct: 27915984 tcgttctgccgctccctcttcttgaccgagtccgg 27915950 Score = 42.1 bits (21), Expect = 2.4 Identities = 38/44 (86%) Strand = Plus / Minus Query: 643 cgcacaccacctgcagccccctcctnctcaaccttcccgtcgac 686 |||||||||||| ||| |||||||| ||| |||| |||| |||| Sbjct: 27915914 cgcacaccacctccagtcccctcctcctccacctccccgacgac 27915871 Score = 40.1 bits (20), Expect = 9.4 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Minus Query: 207 aacatatgc-tgtccaaaattggcaaga 233 ||||||||| |||||||||||||||||| Sbjct: 27917384 aacatatgcatgtccaaaattggcaaga 27917357
>dbj|AP003335.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1144G04 Length = 194459 Score = 248 bits (125), Expect = 2e-62 Identities = 203/229 (88%) Strand = Plus / Minus Query: 294 gcagcaggttcagcattcggaacataccaaccacgaattatctcaatggccttcttcctc 353 |||||||||||||| || ||||||||||||||||| | |||||| ||||||||||||||| Sbjct: 103976 gcagcaggttcagcgtttggaacataccaaccacggagtatctcgatggccttcttcctc 103917 Query: 354 cttgcaagcctggacttgcgatgatctccagtattcctgtgcatggcgccaaccttcact 413 || ||||| |||||||||||| | ||||||||||||||||||||||||||||||||| Sbjct: 103916 ctcgcaagaagggacttgcgatggttaccagtattcctgtgcatggcgccaaccttcact 103857 Query: 414 gtcttgtcgatggctttgtatgcctcagagatcattttctctatttcaatgatttcttca 473 |||||||| |||||||||||||||||||| ||| ||||||||||| |||||| |||||| Sbjct: 103856 gtcttgtcaatggctttgtatgcctcagaaatccatttctctatttgaatgatatcttca 103797 Query: 474 ggttgggcatcggctttcttccgaagcttttcaagggctctgaaaacct 522 ||| |||||| |||||||| | ||||||||||||||| | ||||||| Sbjct: 103796 ggtgtggcatcagctttctttctcagcttttcaagggctttcaaaacct 103748 Score = 125 bits (63), Expect = 2e-25 Identities = 87/95 (91%) Strand = Plus / Minus Query: 519 accttcttcatccgggtgcgcatctcggccttgcgggcatggttgcgaatgcggtgtctg 578 ||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||| | | Sbjct: 102725 accttcttcatcctggtgcgcatctcggccttgcgtgcatggttgcggatgcggtgccgg 102666 Query: 579 tcattctggcgctccctcttcttcaccgagtccgg 613 || ||||| |||||||||||||| ||||||||||| Sbjct: 102665 tcgttctgccgctccctcttcttgaccgagtccgg 102631 Score = 42.1 bits (21), Expect = 2.4 Identities = 38/44 (86%) Strand = Plus / Minus Query: 643 cgcacaccacctgcagccccctcctnctcaaccttcccgtcgac 686 |||||||||||| ||| |||||||| ||| |||| |||| |||| Sbjct: 102595 cgcacaccacctccagtcccctcctcctccacctccccgacgac 102552 Score = 40.1 bits (20), Expect = 9.4 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Minus Query: 207 aacatatgc-tgtccaaaattggcaaga 233 ||||||||| |||||||||||||||||| Sbjct: 104065 aacatatgcatgtccaaaattggcaaga 104038
>dbj|AK062194.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-F06, full insert sequence Length = 455 Score = 192 bits (97), Expect = 1e-45 Identities = 136/149 (91%) Strand = Plus / Minus Query: 294 gcagcaggttcagcattcggaacataccaaccacgaattatctcaatggccttcttcctc 353 |||||||||||||| || ||||||||||||||||| | |||||| ||||||||||||||| Sbjct: 161 gcagcaggttcagcgtttggaacataccaaccacggagtatctcgatggccttcttcctc 102 Query: 354 cttgcaagcctggacttgcgatgatctccagtattcctgtgcatggcgccaaccttcact 413 || ||||| |||||||||||| | ||||||||||||||||||||||||||||||||| Sbjct: 101 ctcgcaagaagggacttgcgatggttaccagtattcctgtgcatggcgccaaccttcact 42 Query: 414 gtcttgtcgatggctttgtatgcctcaga 442 |||||||| |||||||||||||||||||| Sbjct: 41 gtcttgtcaatggctttgtatgcctcaga 13 Score = 40.1 bits (20), Expect = 9.4 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Minus Query: 207 aacatatgc-tgtccaaaattggcaaga 233 ||||||||| |||||||||||||||||| Sbjct: 250 aacatatgcatgtccaaaattggcaaga 223
>dbj|AK071536.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023101N15, full insert sequence Length = 651 Score = 125 bits (63), Expect = 2e-25 Identities = 87/95 (91%) Strand = Plus / Minus Query: 519 accttcttcatccgggtgcgcatctcggccttgcgggcatggttgcgaatgcggtgtctg 578 ||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||| | | Sbjct: 257 accttcttcatcctggtgcgcatctcggccttgcgtgcatggttgcggatgcggtgccgg 198 Query: 579 tcattctggcgctccctcttcttcaccgagtccgg 613 || ||||| |||||||||||||| ||||||||||| Sbjct: 197 tcgttctgccgctccctcttcttgaccgagtccgg 163 Score = 42.1 bits (21), Expect = 2.4 Identities = 38/44 (86%) Strand = Plus / Minus Query: 643 cgcacaccacctgcagccccctcctnctcaaccttcccgtcgac 686 |||||||||||| ||| |||||||| ||| |||| |||| |||| Sbjct: 127 cgcacaccacctccagtcccctcctcctccacctccccgacgac 84
>gb|AC007005.3| Homo sapiens BAC clone RP11-532N23 from 2, complete sequence Length = 167776 Score = 50.1 bits (25), Expect = 0.010 Identities = 25/25 (100%) Strand = Plus / Minus Query: 332 tatctcaatggccttcttcctcctt 356 ||||||||||||||||||||||||| Sbjct: 166108 tatctcaatggccttcttcctcctt 166084
>gb|AY770501.1| Sesamum indicum microsomal oleic acid desaturase gene, complete cds Length = 3762 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Plus Query: 49 tatttcggtttgaagttttaca 70 |||||||||||||||||||||| Sbjct: 1440 tatttcggtttgaagttttaca 1461
>gb|AC140724.4| Mus musculus chromosome 8, clone RP24-291N1, complete sequence Length = 159182 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 439 cagagatcattttctctattt 459 ||||||||||||||||||||| Sbjct: 55397 cagagatcattttctctattt 55417
>gb|AC134323.3| Mus musculus BAC clone RP24-512P7 from chromosome 8, complete sequence Length = 176667 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 439 cagagatcattttctctattt 459 ||||||||||||||||||||| Sbjct: 175097 cagagatcattttctctattt 175077
>emb|Z86063.2|HS410B11 Human DNA sequence from clone RP3-410B11 on chromosome Xp22.11-22.2 Contains the 3' end of a novel gene, complete sequence Length = 58498 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 335 ctcaatggccttcttcctcct 355 ||||||||||||||||||||| Sbjct: 13755 ctcaatggccttcttcctcct 13775
>gb|DQ366743.1| Uncultured Prochlorococcus marinus clone HOT0M-8F9 genomic sequence Length = 27928 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 453 tctatttcaatgatttcttca 473 ||||||||||||||||||||| Sbjct: 18648 tctatttcaatgatttcttca 18668
>emb|AL939122.1|SCO939122 Streptomyces coelicolor A3(2) complete genome; segment 19/29 Length = 311000 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 629 gggcggctcggcggcgcacaccacc 653 ||||||||||||||||| ||||||| Sbjct: 204693 gggcggctcggcggcgcgcaccacc 204669
>gb|AC010051.9| Drosophila melanogaster 3L BAC RP98-3J2 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 184424 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 564 cgaatgcggtgtctgtcattc 584 ||||||||||||||||||||| Sbjct: 7400 cgaatgcggtgtctgtcattc 7380
>gb|AC010055.6| Drosophila melanogaster 3L BAC RP98-24H3 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 163098 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 564 cgaatgcggtgtctgtcattc 584 ||||||||||||||||||||| Sbjct: 144096 cgaatgcggtgtctgtcattc 144076
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 629 gggcggctcggcggcgcacaccacc 653 ||||||||||||||||| ||||||| Sbjct: 3910496 gggcggctcggcggcgcgcaccacc 3910520
>gb|AC157520.2| Mus musculus BAC clone RP23-229N21 from 6, complete sequence Length = 196037 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 448 ttttctctatttcaatgatttcttc 472 |||||||||| |||||||||||||| Sbjct: 166833 ttttctctatgtcaatgatttcttc 166857
>gb|AE003593.2| Drosophila melanogaster chromosome 3L, section 74 of 83 of the complete sequence Length = 313157 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 564 cgaatgcggtgtctgtcattc 584 ||||||||||||||||||||| Sbjct: 141281 cgaatgcggtgtctgtcattc 141301
>gb|AC093353.11| Mus musculus chromosome 10, clone RP23-19C22, complete sequence Length = 188921 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 453 tctatttcaatgatttcttcaggt 476 |||||||||||| ||||||||||| Sbjct: 54497 tctatttcaatgttttcttcaggt 54474
>gb|AC111060.5| Mus musculus chromosome 1, clone RP24-121I5, complete sequence Length = 138419 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 242 aagaaaagctgctgcaattt 261 |||||||||||||||||||| Sbjct: 15020 aagaaaagctgctgcaattt 15039
>gb|AY286122.1| Cyanidioschyzon merolae DBV201 chromosome 1, complete sequence Length = 422021 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 289 cagctgcagcaggttcagca 308 |||||||||||||||||||| Sbjct: 325163 cagctgcagcaggttcagca 325144
>gb|AC124585.3| Mus musculus BAC clone RP23-130P17 from chromosome 10, complete sequence Length = 198030 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 453 tctatttcaatgatttcttcaggt 476 |||||||||||| ||||||||||| Sbjct: 167318 tctatttcaatgttttcttcaggt 167295
>emb|AL356750.16| Human DNA sequence from clone RP11-374F3 on chromosome 13 Contains the KATNAL1 gene for katanin p60 subunit A-like 1, a peroxiredoxin 2 (PRDX2) pseudogene, two novel genes and two CpG islands, complete sequence Length = 182303 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 453 tctatttcaatgatttcttc 472 |||||||||||||||||||| Sbjct: 26193 tctatttcaatgatttcttc 26174
>emb|AL353671.6| Human DNA sequence from clone RP11-205M20 on chromosome 9 Contains the 5' end of the gene for DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide (RIG-I), the gene for tumor protein p53-binding protein (TP53BPL), a novel gene, a DNA fragmentation factor, 40kDa, beta polypeptide (caspase-activated DNase) (DFFB) (CAD, CPAN, DFF40) pseudogene, a novel gene (FLJ25547), the NDUFB6 gene for NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 6, 17kDa (B17), and a CpG island, complete sequence Length = 155585 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 338 aatggccttcttcctccttg 357 |||||||||||||||||||| Sbjct: 134604 aatggccttcttcctccttg 134623
>gb|AC161447.6| Mus musculus BAC clone RP24-333C14 from chromosome 17, complete sequence Length = 182569 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 59 tgaagttttacaacagagga 78 |||||||||||||||||||| Sbjct: 160679 tgaagttttacaacagagga 160698
>gb|AC091862.3| Homo sapiens chromosome 5 clone CTD-2349K24, complete sequence Length = 119395 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 61 aagttttacaacagaggaatgtaa 84 |||||||| ||||||||||||||| Sbjct: 80377 aagttttataacagaggaatgtaa 80400
>gb|AC016561.7| Homo sapiens chromosome 5 clone CTC-466C4, complete sequence Length = 95105 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 61 aagttttacaacagaggaatgtaa 84 |||||||| ||||||||||||||| Sbjct: 82039 aagttttataacagaggaatgtaa 82016
>gb|AC099543.2| Homo sapiens chromosome 3 clone RP11-554B20, complete sequence Length = 156107 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 434 tgcctcagagatcattttct 453 |||||||||||||||||||| Sbjct: 21767 tgcctcagagatcattttct 21748
>gb|AC091805.16| Homo sapiens 12p BAC RP11-841C19 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 177115 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 436 cctcagagatcattttctct 455 |||||||||||||||||||| Sbjct: 170690 cctcagagatcattttctct 170671
>gb|AC098680.3| Homo sapiens BAC clone RP11-600L4 from 4, complete sequence Length = 180918 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 234 tgtgatgaaagaaaagctgc 253 |||||||||||||||||||| Sbjct: 91681 tgtgatgaaagaaaagctgc 91700
>gb|AC157954.2| Pan troglodytes BAC clone CH251-514O14 from chromosome unknown, complete sequence Length = 210950 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 453 tctatttcaatgatttcttc 472 |||||||||||||||||||| Sbjct: 112522 tctatttcaatgatttcttc 112541
>gb|AC154645.3| Mus musculus BAC clone RP23-282G11 from chromosome 9, complete sequence Length = 210202 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 266 tgacaactcccccagaaact 285 |||||||||||||||||||| Sbjct: 49771 tgacaactcccccagaaact 49752
>gb|AC132373.4| Mus musculus BAC clone RP23-480H8 from 1, complete sequence Length = 192562 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 242 aagaaaagctgctgcaattt 261 |||||||||||||||||||| Sbjct: 27064 aagaaaagctgctgcaattt 27045
>gb|AC122506.4| Mus musculus BAC clone RP24-426J4 from 15, complete sequence Length = 166555 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 237 gatgaaagaaaagctgctgc 256 |||||||||||||||||||| Sbjct: 166494 gatgaaagaaaagctgctgc 166475
>gb|AC122263.5| Mus musculus BAC clone RP23-190O11 from 15, complete sequence Length = 207234 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 237 gatgaaagaaaagctgctgc 256 |||||||||||||||||||| Sbjct: 201475 gatgaaagaaaagctgctgc 201494
>gb|AC152950.2| Mus musculus 10 BAC RP23-138J18 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 181465 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 451 tctctatttcaatgatttct 470 |||||||||||||||||||| Sbjct: 106142 tctctatttcaatgatttct 106123 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,293,044 Number of Sequences: 3902068 Number of extensions: 6293044 Number of successful extensions: 136205 Number of sequences better than 10.0: 38 Number of HSP's better than 10.0 without gapping: 38 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 136032 Number of HSP's gapped (non-prelim): 173 length of query: 686 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 663 effective length of database: 17,143,297,704 effective search space: 11366006377752 effective search space used: 11366006377752 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)