| Clone Name | rbasd14h22 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 44.1 bits (22), Expect = 0.53 Identities = 25/26 (96%) Strand = Plus / Minus Query: 476 ggcggcggagatggtcgagggcggcg 501 |||||||||| ||||||||||||||| Sbjct: 26878738 ggcggcggaggtggtcgagggcggcg 26878713
>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome Length = 1849742 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Minus Query: 523 cggggcctcggggcctcggggg 544 |||||||||||||||||||||| Sbjct: 593022 cggggcctcggggcctcggggg 593001
>dbj|AP004744.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBb0065C04 Length = 165270 Score = 44.1 bits (22), Expect = 0.53 Identities = 25/26 (96%) Strand = Plus / Minus Query: 476 ggcggcggagatggtcgagggcggcg 501 |||||||||| ||||||||||||||| Sbjct: 2499 ggcggcggaggtggtcgagggcggcg 2474
>dbj|AP005769.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0051O02 Length = 169532 Score = 44.1 bits (22), Expect = 0.53 Identities = 25/26 (96%) Strand = Plus / Minus Query: 476 ggcggcggagatggtcgagggcggcg 501 |||||||||| ||||||||||||||| Sbjct: 133364 ggcggcggaggtggtcgagggcggcg 133339
>dbj|AK099401.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001E16, full insert sequence Length = 830 Score = 44.1 bits (22), Expect = 0.53 Identities = 25/26 (96%) Strand = Plus / Plus Query: 476 ggcggcggagatggtcgagggcggcg 501 |||||||||| ||||||||||||||| Sbjct: 205 ggcggcggaggtggtcgagggcggcg 230
>gb|AE017221.1| Thermus thermophilus HB27, complete genome Length = 1894877 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Minus Query: 523 cggggcctcggggcctcggggg 544 |||||||||||||||||||||| Sbjct: 246795 cggggcctcggggcctcggggg 246774
>gb|U55029.1|CFU55029 Canis familiaris MHC class I DLA-53 gene, exons 1-3 Length = 3580 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 523 cggggcctcggggcctcgggg 543 ||||||||||||||||||||| Sbjct: 1217 cggggcctcggggcctcgggg 1237
>emb|AJ249324.1|MXP249324 Mentha x piperita mRNA for isopentenyl monophosphate kinase (ipk gene) Length = 1481 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 144 cgcaaaaagcttcagtcttca 164 ||||||||||||||||||||| Sbjct: 141 cgcaaaaagcttcagtcttca 161
>gb|AC090618.11| Homo sapiens chromosome 17, clone RP11-763E3, complete sequence Length = 195031 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 153 cttcagtcttcattgtctcaa 173 ||||||||||||||||||||| Sbjct: 160846 cttcagtcttcattgtctcaa 160826
>emb|CR932777.1| Human DNA sequence from clone XX-NCIH2171_7H20, complete sequence Length = 115459 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 522 tcggggcctcggggcctcggg 542 ||||||||||||||||||||| Sbjct: 38245 tcggggcctcggggcctcggg 38265
>emb|CR381644.8| Zebrafish DNA sequence from clone CH211-80A15 in linkage group 8, complete sequence Length = 171750 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 100 acatctttttgcttcatcatc 120 ||||||||||||||||||||| Sbjct: 91307 acatctttttgcttcatcatc 91327
>gb|AC036214.9| Homo sapiens chromosome 8, clone RP11-26J3, complete sequence Length = 160545 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 86 tatagagaaagctgacatctt 106 ||||||||||||||||||||| Sbjct: 30592 tatagagaaagctgacatctt 30572
>gb|AC026467.6| Homo sapiens chromosome 16 clone RP11-410M9, complete sequence Length = 148054 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 534 ggcctcgggggcacctggagg 554 ||||||||||||||||||||| Sbjct: 126650 ggcctcgggggcacctggagg 126630
>gb|AC018952.9| Homo sapiens chromosome 8, clone RP11-498N9, complete sequence Length = 180535 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 86 tatagagaaagctgacatctt 106 ||||||||||||||||||||| Sbjct: 102301 tatagagaaagctgacatctt 102321
>gb|AC011073.8| Homo sapiens chromosome 17, clone RP11-51E18, complete sequence Length = 160616 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 153 cttcagtcttcattgtctcaa 173 ||||||||||||||||||||| Sbjct: 154615 cttcagtcttcattgtctcaa 154635
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 478 cggcggagatggtcgagggcggcga 502 ||||||||||||||||| ||||||| Sbjct: 13660140 cggcggagatggtcgagcgcggcga 13660116
>gb|AC135049.2| Homo sapiens chromosome 16 clone RP11-142N21, complete sequence Length = 115368 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 534 ggcctcgggggcacctggagg 554 ||||||||||||||||||||| Sbjct: 103225 ggcctcgggggcacctggagg 103205
>gb|U47924.1|HSU47924 Human chromosome 12p13 sequence, complete sequence Length = 222930 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 522 tcggggcctcggggcctcggg 542 ||||||||||||||||||||| Sbjct: 79782 tcggggcctcggggcctcggg 79762
>gb|AF179283.1|AF179283 Mentha x piperita isopentenyl monophosphate kinase (IPK) mRNA, complete cds Length = 1481 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 144 cgcaaaaagcttcagtcttca 164 ||||||||||||||||||||| Sbjct: 141 cgcaaaaagcttcagtcttca 161
>emb|AL731609.2|OSJN00259 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0079M09, complete sequence Length = 187359 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 478 cggcggagatggtcgagggcggcga 502 ||||||||||||||||| ||||||| Sbjct: 54748 cggcggagatggtcgagcgcggcga 54724
>gb|U55026.1|CFU55026 Canis familiaris MHC class I DLA-12 gene, complete cds Length = 3943 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 523 cggggcctcggggcctcgggg 543 ||||||||||||||||||||| Sbjct: 1139 cggggcctcggggcctcgggg 1159
>ref|XM_959604.1| Neurospora crassa OR74A hypothetical protein (NCU09262.1) partial mRNA Length = 909 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 476 ggcggcggagatggtcgagg 495 |||||||||||||||||||| Sbjct: 258 ggcggcggagatggtcgagg 239
>ref|XM_331653.1| Neurospora crassa OR74A hypothetical protein (NCU09262.1) partial mRNA Length = 909 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 476 ggcggcggagatggtcgagg 495 |||||||||||||||||||| Sbjct: 258 ggcggcggagatggtcgagg 239
>emb|CR769785.19| Zebrafish DNA sequence from clone DKEY-1N3 in linkage group 13, complete sequence Length = 232168 Score = 40.1 bits (20), Expect = 8.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 317 gcgaaatgacggcaacagcaaagatact 344 ||||| ||||||||||| |||||||||| Sbjct: 88799 gcgaagtgacggcaacatcaaagatact 88826
>emb|CR704672.1|CNS0G6OC Tetraodon nigroviridis full-length cDNA Length = 1194 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 83 aattatagagaaagctgaca 102 |||||||||||||||||||| Sbjct: 1161 aattatagagaaagctgaca 1142
>emb|CR694920.1|CNS0FZ5G Tetraodon nigroviridis full-length cDNA Length = 1244 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 83 aattatagagaaagctgaca 102 |||||||||||||||||||| Sbjct: 1207 aattatagagaaagctgaca 1188
>emb|CR689878.2|CNS0FV9E Tetraodon nigroviridis full-length cDNA Length = 1214 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 83 aattatagagaaagctgaca 102 |||||||||||||||||||| Sbjct: 1190 aattatagagaaagctgaca 1171
>emb|CR689057.1|CNS0FUML Tetraodon nigroviridis full-length cDNA Length = 1233 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 83 aattatagagaaagctgaca 102 |||||||||||||||||||| Sbjct: 1204 aattatagagaaagctgaca 1185
>gb|AC090654.38| Mus musculus strain C57BL/6J clone rp23-329p1 map 14, complete sequence Length = 204267 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 524 ggggcctcggggcctcgggg 543 |||||||||||||||||||| Sbjct: 119831 ggggcctcggggcctcgggg 119812
>emb|Z83321.1|ATZ83321 A.thaliana 16 kb chromosome 1 DNA fragment Length = 16202 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 aaacttcactaaattataga 91 |||||||||||||||||||| Sbjct: 10897 aaacttcactaaattataga 10878
>emb|BX842628.1| Neurospora crassa DNA linkage group I BAC clone B23L4 Length = 61971 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 476 ggcggcggagatggtcgagg 495 |||||||||||||||||||| Sbjct: 38543 ggcggcggagatggtcgagg 38524
>gb|BC050298.1| Homo sapiens cDNA clone IMAGE:5302590 Length = 2884 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 tgacatctttttgcttcatc 117 |||||||||||||||||||| Sbjct: 1481 tgacatctttttgcttcatc 1500
>emb|BX000471.7| Zebrafish DNA sequence from clone DKEY-11C8 in linkage group 20 Contains the gene for a novel protein similar to human transmembrane protein SHREW1 (SHREW1) and three CpG islands, complete sequence Length = 227892 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 147 aaaaagcttcagtcttcatt 166 |||||||||||||||||||| Sbjct: 216624 aaaaagcttcagtcttcatt 216605
>gb|AY741371.1| Emiliania huxleyi strain CCMP 373 chloroplast, complete genome Length = 105309 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 581 tggtgataatctggctgggatcga 604 ||||||||||| |||||||||||| Sbjct: 31490 tggtgataatcgggctgggatcga 31513
>gb|AF332574.1| Desulfovibrio gigas putative lytic transglycosylase gene, partial cds; putative universal stress response protein, putative RRF2 protein, and putative multidrug efflux transporter genes, complete cds; and unknown genes Length = 6940 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 267 acggcaaccgggatggcgtg 286 |||||||||||||||||||| Sbjct: 736 acggcaaccgggatggcgtg 755
>gb|AC046175.6| Homo sapiens chromosome 8, clone RP11-577O23, complete sequence Length = 194972 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 tatagagaaagctgacatct 105 |||||||||||||||||||| Sbjct: 133437 tatagagaaagctgacatct 133418
>gb|AC018991.10| Homo sapiens, clone RP11-448E20, complete sequence Length = 174049 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 tatagagaaagctgacatct 105 |||||||||||||||||||| Sbjct: 86395 tatagagaaagctgacatct 86376
>gb|AC015866.7|AC015866 Homo sapiens, clone RP11-59A1, complete sequence Length = 150564 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 tatagagaaagctgacatct 105 |||||||||||||||||||| Sbjct: 47413 tatagagaaagctgacatct 47394
>gb|AF336848.1|AF336848 Pseudomonas pseudoalcaligenes HBQ06 PHA synthase 1 (phaC1) gene, complete cds; PHA depolymerase (phaZ) gene, partial cds; and unknown gene Length = 2939 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 488 ggtcgagggcggcgacgaag 507 |||||||||||||||||||| Sbjct: 2433 ggtcgagggcggcgacgaag 2414
>gb|AC105755.4| Homo sapiens BAC clone RP11-46H14 from 4, complete sequence Length = 145673 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 tgacatctttttgcttcatc 117 |||||||||||||||||||| Sbjct: 102198 tgacatctttttgcttcatc 102217
>gb|AC080132.6| Homo sapiens BAC clone RP11-166B20 from 4, complete sequence Length = 114320 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 58 gcgattacatttcaaaactt 77 |||||||||||||||||||| Sbjct: 75921 gcgattacatttcaaaactt 75902
>gb|AC009978.3|AC009978 Genomic sequence for Arabidopsis thaliana BAC T23E18 from chromosome I, complete sequence Length = 97554 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 aaacttcactaaattataga 91 |||||||||||||||||||| Sbjct: 8403 aaacttcactaaattataga 8422
>gb|AY142918.1| Heliobacillus mobilis Gamma-glutamyl phosphate reductase (GPR) gene, partial cds Length = 1281 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 431 ttcggcagctgcagcgatga 450 |||||||||||||||||||| Sbjct: 534 ttcggcagctgcagcgatga 515 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,380,539 Number of Sequences: 3902068 Number of extensions: 4380539 Number of successful extensions: 111749 Number of sequences better than 10.0: 43 Number of HSP's better than 10.0 without gapping: 43 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 111487 Number of HSP's gapped (non-prelim): 262 length of query: 606 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 583 effective length of database: 17,143,297,704 effective search space: 9994542561432 effective search space used: 9994542561432 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)