ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd14f01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 200 4e-48
2dbj|AP005885.3| Oryza sativa (japonica cultivar-group) genomic D... 200 4e-48
3dbj|AK111544.1| Oryza sativa (japonica cultivar-group) cDNA clon... 200 4e-48
4dbj|AB101648.1| Oryza sativa (japonica cultivar-group) Roc5 mRNA... 200 4e-48
5ref|XM_473543.1| Oryza sativa (japonica cultivar-group), predic... 131 3e-27
6emb|AL663003.2|OSJN00203 Oryza sativa genomic DNA, chromosome 4,... 131 3e-27
7dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 131 3e-27
8dbj|AK112099.1| Oryza sativa (japonica cultivar-group) cDNA clon... 131 3e-27
9dbj|AK111914.1| Oryza sativa (japonica cultivar-group) cDNA clon... 131 3e-27
10dbj|AB101647.1| Oryza sativa (japonica cultivar-group) Roc4 mRNA... 131 3e-27
11emb|AJ250985.1|ZMA250985 Zea mays mRNA for OCL3 protein (ocl3 gene) 100 1e-17
12emb|AJ748731.1| Zea mays OCL1 gene for homeobox protein OCL1, ex... 100 1e-17
13emb|Y17898.1|ZMA17898 Zea mays mRNA for encoding homeobox protein 100 1e-17
14gb|AY110994.1| Zea mays CL1209_1 mRNA sequence 100 1e-17
15emb|AJ250984.1|ZMA250984 Zea mays mRNA for OCL2 protein (ocl2 gene) 70 9e-09
16dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 66 1e-07
17dbj|AP005681.3| Oryza sativa (japonica cultivar-group) genomic D... 66 1e-07
18dbj|AP005864.2| Oryza sativa (japonica cultivar-group) genomic D... 66 1e-07
19dbj|AK071877.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 1e-07
20gb|AC148764.16| Medicago truncatula clone mth2-30o12, complete s... 50 0.009
21gb|AF067961.1|AF067961 Malus domestica homeodomain protein (h3) ... 50 0.009
22gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete... 44 0.54
23gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, comp... 44 0.54
24emb|AL844199.8| Mouse DNA sequence from clone RP23-39F22 on chro... 44 0.54
25gb|AC158514.2| Mus musculus BAC clone RP24-480D16 from chromosom... 42 2.1
26gb|AC147065.2| Pan troglodytes BAC clone RP43-163G7 from 7, comp... 42 2.1
27gb|AC154903.4| Mus musculus BAC clone RP23-414E24 from chromosom... 42 2.1
28gb|AC018647.5| Homo sapiens chromosome 7 clone RP11-379H18, comp... 42 2.1
29emb|AL390723.21| Human DNA sequence from clone RP11-19G1 on chro... 42 2.1
30gb|AC068233.11| Homo sapiens chromosome 15, clone RP11-169M2, co... 42 2.1
31gb|AC182751.1| Gasterosteus aculeatus clone VMRC26-154K14, compl... 42 2.1
32gb|AC000100.2| Homo sapiens Chromosome 19 BAC Clone 959a10, comp... 42 2.1
33gb|AC073649.3|AC073649 Homo sapiens clone RP11-823D8, complete s... 42 2.1
34gb|AC010682.3| Homo sapiens BAC clone RP11-251M8 from Y, complet... 42 2.1
35ref|NG_004755.1| Homo sapiens chromosome Y palindromes P1, P2, P... 42 2.1
36ref|NM_116298.2| Arabidopsis thaliana ANL2 (ANTHOCYANINLESS 2); ... 40 8.5
37ref|XM_467209.1| Oryza sativa (japonica cultivar-group), mRNA 40 8.5
38gb|CP000358.1| Deinococcus geothermalis DSM 11300 plasmid 1, com... 40 8.5
39emb|CR956635.11| Pig DNA sequence from clone CH242-184L20 on chr... 40 8.5
40gb|AF328842.1| Picea abies homeodomain protein HB2 mRNA, complet... 40 8.5
41gb|AY368623.1| Sus scrofa collagen type V alpha 2 (COL5A2) mRNA,... 40 8.5
42gb|AC134265.6| Rattus norvegicus 13 BAC CH230-151K3 (Children's ... 40 8.5
43gb|AC132315.4| Mus musculus BAC clone RP24-234J3 from chromosome... 40 8.5
44gb|AC165271.2| Mus musculus BAC clone RP24-424G16 from chromosom... 40 8.5
45emb|AL606693.3|OSJN00109 Oryza sativa genomic DNA, chromosome 4,... 40 8.5
46emb|AL161472.2|ATCHRIV2 Arabidopsis thaliana DNA chromosome 4, c... 40 8.5
47emb|AL603702.14| Mouse DNA sequence from clone RP23-406A14 on ch... 40 8.5
48gb|AE006025.1| Caulobacter crescentus CB15 section 351 of 359 of... 40 8.5
49gb|AC104246.3| Homo sapiens chromosome 8, clone RP11-1073L1, com... 40 8.5
50gb|AC046174.6| Homo sapiens chromosome 8, clone RP11-621B3, comp... 40 8.5
51gb|AY062100.1| Arabidopsis thaliana AT4g00730/f6n23_10 mRNA sequ... 40 8.5
52gb|CP000232.1| Moorella thermoacetica ATCC 39073, complete genome 40 8.5
53emb|BX827413.1|CNS0A2GQ Arabidopsis thaliana Full-length cDNA Co... 40 8.5
54gb|DQ345554.1| Pinctada martensi clone M5-10 microsatellite sequ... 40 8.5
55dbj|AP004096.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.5
56gb|AF058919.2|F6N23 Arabidopsis thaliana BAC F6N23 40 8.5
57dbj|AK064814.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 8.5
58emb|BX470100.6| Zebrafish DNA sequence from clone DKEY-239K7 in ... 40 8.5
59gb|AF077335.1|AF077335 Arabidopsis thaliana Anthocyaninless2 (AN... 40 8.5
60dbj|AP003154.2| Mus musculus genomic DN, chromosome 16 clone:RP2... 40 8.5
61dbj|AP003153.1| Mus musculus genomic DNA, chromosome 16q clone:R... 40 8.5
62gb|AC154237.1| Mus musculus BAC clone RP24-162O18 from 17, compl... 40 8.5
63emb|CT030190.9| Mouse DNA sequence from clone RP23-115D20 on chr... 40 8.5
64gb|U85254.1|ATU85254 Arabidopsis thaliana homeodomain protein AH... 40 8.5
65gb|U34743.1|PSU34743 Phalaenopsis sp. 'hybrid SM9108' homeobox p... 40 8.5 
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  200 bits (101), Expect = 4e-48
 Identities = 137/148 (92%), Gaps = 2/148 (1%)
 Strand = Plus / Plus

                                                                            
Query: 475      aacactcaggcgttgcgcattgcagcgccgtcttgatcttcttgatagtgcaggagataa 534
                |||||||||||||  |||| |||||||||||||||||||||||||| ||||||||||| |
Sbjct: 27506920 aacactcaggcgt--cgcactgcagcgccgtcttgatcttcttgatggtgcaggagatga 27506977

                                                                            
Query: 535      gattgttcacggtctcgaccgattccactgtgagcttggcggtgggctggctgttcacaa 594
                |||||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||
Sbjct: 27506978 gattgttcacggtctcgaccgattccacggtgagcttggcggtgggctggttgttgacaa 27507037

                                            
Query: 595      gaatctggaatgccaccgtcagcagaga 622
                |||||||||| ||||| || ||||||||
Sbjct: 27507038 gaatctggaacgccacggtgagcagaga 27507065



 Score =  111 bits (56), Expect = 3e-21
 Identities = 82/88 (93%), Gaps = 2/88 (2%)
 Strand = Plus / Plus

                                                                            
Query: 313      acggaagaggcc-gagtcaatacccgaaccaccaccattgctctgtgctaaggacctgtc 371
                |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 27506748 acggtagaggccagagtcaatacccgaaccaccaccattgctctgtgctaaggaccggcc 27506807

                                            
Query: 372      aa-aaagatccttatcacctagcaaagg 398
                ||  ||||||||||||||||||||||||
Sbjct: 27506808 aagcaagatccttatcacctagcaaagg 27506835



 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 412      gcgcggttcgttcttgactcag 433
                ||||||||||||||||||||||
Sbjct: 27506854 gcgcggttcgttcttgactcag 27506875



 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 520      tagtgcaggagataagattg 539
                ||||||||||||||||||||
Sbjct: 28233337 tagtgcaggagataagattg 28233356
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>dbj|AP005885.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0657H12
          Length = 142688

 Score =  200 bits (101), Expect = 4e-48
 Identities = 137/148 (92%), Gaps = 2/148 (1%)
 Strand = Plus / Plus

                                                                         
Query: 475   aacactcaggcgttgcgcattgcagcgccgtcttgatcttcttgatagtgcaggagataa 534
             |||||||||||||  |||| |||||||||||||||||||||||||| ||||||||||| |
Sbjct: 98642 aacactcaggcgt--cgcactgcagcgccgtcttgatcttcttgatggtgcaggagatga 98699

                                                                         
Query: 535   gattgttcacggtctcgaccgattccactgtgagcttggcggtgggctggctgttcacaa 594
             |||||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||
Sbjct: 98700 gattgttcacggtctcgaccgattccacggtgagcttggcggtgggctggttgttgacaa 98759

                                         
Query: 595   gaatctggaatgccaccgtcagcagaga 622
             |||||||||| ||||| || ||||||||
Sbjct: 98760 gaatctggaacgccacggtgagcagaga 98787



 Score =  111 bits (56), Expect = 3e-21
 Identities = 82/88 (93%), Gaps = 2/88 (2%)
 Strand = Plus / Plus

                                                                         
Query: 313   acggaagaggcc-gagtcaatacccgaaccaccaccattgctctgtgctaaggacctgtc 371
             |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 98470 acggtagaggccagagtcaatacccgaaccaccaccattgctctgtgctaaggaccggcc 98529

                                         
Query: 372   aa-aaagatccttatcacctagcaaagg 398
             ||  ||||||||||||||||||||||||
Sbjct: 98530 aagcaagatccttatcacctagcaaagg 98557



 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 412   gcgcggttcgttcttgactcag 433
             ||||||||||||||||||||||
Sbjct: 98576 gcgcggttcgttcttgactcag 98597
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>dbj|AK111544.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013045A10, full
            insert sequence
          Length = 3437

 Score =  200 bits (101), Expect = 4e-48
 Identities = 137/148 (92%), Gaps = 2/148 (1%)
 Strand = Plus / Minus

                                                                        
Query: 475  aacactcaggcgttgcgcattgcagcgccgtcttgatcttcttgatagtgcaggagataa 534
            |||||||||||||  |||| |||||||||||||||||||||||||| ||||||||||| |
Sbjct: 2876 aacactcaggcgt--cgcactgcagcgccgtcttgatcttcttgatggtgcaggagatga 2819

                                                                        
Query: 535  gattgttcacggtctcgaccgattccactgtgagcttggcggtgggctggctgttcacaa 594
            |||||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||
Sbjct: 2818 gattgttcacggtctcgaccgattccacggtgagcttggcggtgggctggttgttgacaa 2759

                                        
Query: 595  gaatctggaatgccaccgtcagcagaga 622
            |||||||||| ||||| || ||||||||
Sbjct: 2758 gaatctggaacgccacggtgagcagaga 2731



 Score =  111 bits (56), Expect = 3e-21
 Identities = 82/88 (93%), Gaps = 2/88 (2%)
 Strand = Plus / Minus

                                                                        
Query: 313  acggaagaggcc-gagtcaatacccgaaccaccaccattgctctgtgctaaggacctgtc 371
            |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 3048 acggtagaggccagagtcaatacccgaaccaccaccattgctctgtgctaaggaccggcc 2989

                                        
Query: 372  aa-aaagatccttatcacctagcaaagg 398
            ||  ||||||||||||||||||||||||
Sbjct: 2988 aagcaagatccttatcacctagcaaagg 2961



 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 412  gcgcggttcgttcttgactcag 433
            ||||||||||||||||||||||
Sbjct: 2942 gcgcggttcgttcttgactcag 2921
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>dbj|AB101648.1| Oryza sativa (japonica cultivar-group) Roc5 mRNA for GL2-type
            homeodomain protein, complete cds
          Length = 3114

 Score =  200 bits (101), Expect = 4e-48
 Identities = 137/148 (92%), Gaps = 2/148 (1%)
 Strand = Plus / Minus

                                                                        
Query: 475  aacactcaggcgttgcgcattgcagcgccgtcttgatcttcttgatagtgcaggagataa 534
            |||||||||||||  |||| |||||||||||||||||||||||||| ||||||||||| |
Sbjct: 2556 aacactcaggcgt--cgcactgcagcgccgtcttgatcttcttgatggtgcaggagatga 2499

                                                                        
Query: 535  gattgttcacggtctcgaccgattccactgtgagcttggcggtgggctggctgttcacaa 594
            |||||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||
Sbjct: 2498 gattgttcacggtctcgaccgattccacggtgagcttggcggtgggctggttgttgacaa 2439

                                        
Query: 595  gaatctggaatgccaccgtcagcagaga 622
            |||||||||| ||||| || ||||||||
Sbjct: 2438 gaatctggaacgccacggtgagcagaga 2411



 Score =  111 bits (56), Expect = 3e-21
 Identities = 82/88 (93%), Gaps = 2/88 (2%)
 Strand = Plus / Minus

                                                                        
Query: 313  acggaagaggcc-gagtcaatacccgaaccaccaccattgctctgtgctaaggacctgtc 371
            |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 2728 acggtagaggccagagtcaatacccgaaccaccaccattgctctgtgctaaggaccggcc 2669

                                        
Query: 372  aa-aaagatccttatcacctagcaaagg 398
            ||  ||||||||||||||||||||||||
Sbjct: 2668 aagcaagatccttatcacctagcaaagg 2641



 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 412  gcgcggttcgttcttgactcag 433
            ||||||||||||||||||||||
Sbjct: 2622 gcgcggttcgttcttgactcag 2601
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>ref|XM_473543.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2421

 Score =  131 bits (66), Expect = 3e-27
 Identities = 105/118 (88%)
 Strand = Plus / Minus

                                                                        
Query: 490  cgcattgcagcgccgtcttgatcttcttgatagtgcaggagataagattgttcacggtct 549
            |||| |||||||||||||||||||||||||| |||||||||||||| ||| |||||||||
Sbjct: 2413 cgcaatgcagcgccgtcttgatcttcttgatggtgcaggagataaggttgctcacggtct 2354

                                                                      
Query: 550  cgaccgattccactgtgagcttggcggtgggctggctgttcacaagaatctggaatgc 607
            |||| || ||||| |||||||| ||  |||||||||||||  |||| |||||||||||
Sbjct: 2353 cgactgactccaccgtgagcttagcactgggctggctgttggcaagtatctggaatgc 2296
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>emb|AL663003.2|OSJN00203 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0032E06,
             complete sequence
          Length = 125196

 Score =  131 bits (66), Expect = 3e-27
 Identities = 105/118 (88%)
 Strand = Plus / Plus

                                                                         
Query: 490   cgcattgcagcgccgtcttgatcttcttgatagtgcaggagataagattgttcacggtct 549
             |||| |||||||||||||||||||||||||| |||||||||||||| ||| |||||||||
Sbjct: 65295 cgcaatgcagcgccgtcttgatcttcttgatggtgcaggagataaggttgctcacggtct 65354

                                                                       
Query: 550   cgaccgattccactgtgagcttggcggtgggctggctgttcacaagaatctggaatgc 607
             |||| || ||||| |||||||| ||  |||||||||||||  |||| |||||||||||
Sbjct: 65355 cgactgactccaccgtgagcttagcactgggctggctgttggcaagtatctggaatgc 65412



 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 51/52 (98%)
 Strand = Plus / Plus

                                                                 
Query: 318   agaggccgagtcaatacccgaaccaccaccattgctctgtgctaaggacctg 369
             |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65120 agaggctgagtcaatacccgaaccaccaccattgctctgtgctaaggacctg 65171



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                            
Query: 413   cgcggttcgttcttgactcagactcagcgcc 443
             ||||||||||||||||||||| |||| ||||
Sbjct: 65215 cgcggttcgttcttgactcaggctcatcgcc 65245
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  131 bits (66), Expect = 3e-27
 Identities = 105/118 (88%)
 Strand = Plus / Plus

                                                                            
Query: 490      cgcattgcagcgccgtcttgatcttcttgatagtgcaggagataagattgttcacggtct 549
                |||| |||||||||||||||||||||||||| |||||||||||||| ||| |||||||||
Sbjct: 28574505 cgcaatgcagcgccgtcttgatcttcttgatggtgcaggagataaggttgctcacggtct 28574564

                                                                          
Query: 550      cgaccgattccactgtgagcttggcggtgggctggctgttcacaagaatctggaatgc 607
                |||| || ||||| |||||||| ||  |||||||||||||  |||| |||||||||||
Sbjct: 28574565 cgactgactccaccgtgagcttagcactgggctggctgttggcaagtatctggaatgc 28574622



 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 51/52 (98%)
 Strand = Plus / Plus

                                                                    
Query: 318      agaggccgagtcaatacccgaaccaccaccattgctctgtgctaaggacctg 369
                |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28574330 agaggctgagtcaatacccgaaccaccaccattgctctgtgctaaggacctg 28574381



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                               
Query: 413      cgcggttcgttcttgactcagactcagcgcc 443
                ||||||||||||||||||||| |||| ||||
Sbjct: 28574425 cgcggttcgttcttgactcaggctcatcgcc 28574455



 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 208     aaacagaggcaacgagccagccaa 231
               |||||||| |||||||||||||||
Sbjct: 3500684 aaacagagccaacgagccagccaa 3500661
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>dbj|AK112099.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-108-E06, full
            insert sequence
          Length = 3089

 Score =  131 bits (66), Expect = 3e-27
 Identities = 105/118 (88%)
 Strand = Plus / Minus

                                                                        
Query: 490  cgcattgcagcgccgtcttgatcttcttgatagtgcaggagataagattgttcacggtct 549
            |||| |||||||||||||||||||||||||| |||||||||||||| ||| |||||||||
Sbjct: 2550 cgcaatgcagcgccgtcttgatcttcttgatggtgcaggagataaggttgctcacggtct 2491

                                                                      
Query: 550  cgaccgattccactgtgagcttggcggtgggctggctgttcacaagaatctggaatgc 607
            |||| || ||||| |||||||| ||  |||||||||||||  |||| |||||||||||
Sbjct: 2490 cgactgactccaccgtgagcttagcactgggctggctgttggcaagtatctggaatgc 2433



 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 51/52 (98%)
 Strand = Plus / Minus

                                                                
Query: 318  agaggccgagtcaatacccgaaccaccaccattgctctgtgctaaggacctg 369
            |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2725 agaggctgagtcaatacccgaaccaccaccattgctctgtgctaaggacctg 2674



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                           
Query: 413  cgcggttcgttcttgactcagactcagcgcc 443
            ||||||||||||||||||||| |||| ||||
Sbjct: 2630 cgcggttcgttcttgactcaggctcatcgcc 2600
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>dbj|AK111914.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033128F17, full
            insert sequence
          Length = 3052

 Score =  131 bits (66), Expect = 3e-27
 Identities = 105/118 (88%)
 Strand = Plus / Minus

                                                                        
Query: 490  cgcattgcagcgccgtcttgatcttcttgatagtgcaggagataagattgttcacggtct 549
            |||| |||||||||||||||||||||||||| |||||||||||||| ||| |||||||||
Sbjct: 2533 cgcaatgcagcgccgtcttgatcttcttgatggtgcaggagataaggttgctcacggtct 2474

                                                                      
Query: 550  cgaccgattccactgtgagcttggcggtgggctggctgttcacaagaatctggaatgc 607
            |||| || ||||| |||||||| ||  |||||||||||||  |||| |||||||||||
Sbjct: 2473 cgactgactccaccgtgagcttagcactgggctggctgttggcaagtatctggaatgc 2416



 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 51/52 (98%)
 Strand = Plus / Minus

                                                                
Query: 318  agaggccgagtcaatacccgaaccaccaccattgctctgtgctaaggacctg 369
            |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2707 agaggctgagtcaatacccgaaccaccaccattgctctgtgctaaggacctg 2656



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                           
Query: 413  cgcggttcgttcttgactcagactcagcgcc 443
            ||||||||||||||||||||| |||| ||||
Sbjct: 2612 cgcggttcgttcttgactcaggctcatcgcc 2582
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>dbj|AB101647.1| Oryza sativa (japonica cultivar-group) Roc4 mRNA for GL2-type
            homeodomain protein, complete cds
          Length = 2957

 Score =  131 bits (66), Expect = 3e-27
 Identities = 105/118 (88%)
 Strand = Plus / Minus

                                                                        
Query: 490  cgcattgcagcgccgtcttgatcttcttgatagtgcaggagataagattgttcacggtct 549
            |||| |||||||||||||||||||||||||| |||||||||||||| ||| |||||||||
Sbjct: 2434 cgcaatgcagcgccgtcttgatcttcttgatggtgcaggagataaggttgctcacggtct 2375

                                                                      
Query: 550  cgaccgattccactgtgagcttggcggtgggctggctgttcacaagaatctggaatgc 607
            |||| || ||||| |||||||| ||  |||||||||||||  |||| |||||||||||
Sbjct: 2374 cgactgactccaccgtgagcttagcactgggctggctgttggcaagtatctggaatgc 2317



 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 50/51 (98%)
 Strand = Plus / Minus

                                                               
Query: 319  gaggccgagtcaatacccgaaccaccaccattgctctgtgctaaggacctg 369
            ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2608 gaggctgagtcaatacccgaaccaccaccattgctctgtgctaaggacctg 2558



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                           
Query: 413  cgcggttcgttcttgactcagactcagcgcc 443
            ||||||||||||||||||||| |||| ||||
Sbjct: 2514 cgcggttcgttcttgactcaggctcatcgcc 2484
to top
>emb|AJ250985.1|ZMA250985 Zea mays mRNA for OCL3 protein (ocl3 gene)
          Length = 3580

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 95/110 (86%)
 Strand = Plus / Minus

                                                                        
Query: 506  cttgatcttcttgatagtgcaggagataagattgttcacggtctcgaccgattccactgt 565
            ||||||||||| ||| ||||||||||  || ||| | |||||||| ||||| ||||| ||
Sbjct: 3051 cttgatcttctggatggtgcaggagagcaggttgctgacggtctccaccgactccacggt 2992

                                                              
Query: 566  gagcttggcggtgggctggctgttcacaagaatctggaatgccaccgtca 615
            |||||| ||||||||| || ||||||| || |||||||||||||||||||
Sbjct: 2991 gagcttcgcggtgggcaggttgttcaccaggatctggaatgccaccgtca 2942



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 326  agtcaatacccgaaccaccac 346
            |||||||||||||||||||||
Sbjct: 3469 agtcaatacccgaaccaccac 3449
to top
>emb|AJ748731.1| Zea mays OCL1 gene for homeobox protein OCL1, exons 1-9
          Length = 9947

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 95/110 (86%)
 Strand = Plus / Minus

                                                                        
Query: 495  tgcagcgccgtcttgatcttcttgatagtgcaggagataagattgttcacggtctcgacc 554
            |||||||| ||||||||||||||||| |||||| | || || |||||||||||||| || 
Sbjct: 8832 tgcagcgctgtcttgatcttcttgatggtgcagaatatgaggttgttcacggtctctact 8773

                                                              
Query: 555  gattccactgtgagcttggcggtgggctggctgttcacaagaatctggaa 604
            || ||||| ||||| |||||||| ||||||||||| || || ||||||||
Sbjct: 8772 gactccacggtgagtttggcggtcggctggctgttgacgaggatctggaa 8723



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 74/83 (89%), Gaps = 2/83 (2%)
 Strand = Plus / Minus

                                                                        
Query: 318  agaggccgagtcaatacccgaaccaccaccattgctctgtgctaaggacctgtcaaa--a 375
            |||| |||||||||||||||||||||||||||||||| ||||||| |||| ||| ||   
Sbjct: 9006 agagaccgagtcaatacccgaaccaccaccattgctccgtgctaaagacccgtccaagct 8947

                                   
Query: 376  agatccttatcacctagcaaagg 398
             ||||||||||||||||||||||
Sbjct: 8946 ggatccttatcacctagcaaagg 8924
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>emb|Y17898.1|ZMA17898 Zea mays mRNA for encoding homeobox protein
          Length = 3092

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 95/110 (86%)
 Strand = Plus / Minus

                                                                        
Query: 495  tgcagcgccgtcttgatcttcttgatagtgcaggagataagattgttcacggtctcgacc 554
            |||||||| ||||||||||||||||| |||||| | || || |||||||||||||| || 
Sbjct: 2611 tgcagcgctgtcttgatcttcttgatggtgcagaatatgaggttgttcacggtctctact 2552

                                                              
Query: 555  gattccactgtgagcttggcggtgggctggctgttcacaagaatctggaa 604
            || ||||| ||||| |||||||| ||||||||||| || || ||||||||
Sbjct: 2551 gactccacggtgagtttggcggtcggctggctgttgacgaggatctggaa 2502



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 74/83 (89%), Gaps = 2/83 (2%)
 Strand = Plus / Minus

                                                                        
Query: 318  agaggccgagtcaatacccgaaccaccaccattgctctgtgctaaggacctgtcaaa--a 375
            |||| |||||||||||||||||||||||||||||||| ||||||| |||| ||| ||   
Sbjct: 2784 agagaccgagtcaatacccgaaccaccaccattgctccgtgctaaagacccgtccaagct 2725

                                   
Query: 376  agatccttatcacctagcaaagg 398
             ||||||||||||||||||||||
Sbjct: 2724 ggatccttatcacctagcaaagg 2702
to top
>gb|AY110994.1| Zea mays CL1209_1 mRNA sequence
          Length = 3550

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 95/110 (86%)
 Strand = Plus / Minus

                                                                        
Query: 506  cttgatcttcttgatagtgcaggagataagattgttcacggtctcgaccgattccactgt 565
            ||||||||||| ||| ||||||||||  || ||| | |||||||| ||||| ||||| ||
Sbjct: 3051 cttgatcttctggatggtgcaggagagcaggttgctgacggtctccaccgactccacggt 2992

                                                              
Query: 566  gagcttggcggtgggctggctgttcacaagaatctggaatgccaccgtca 615
            |||||| ||||||||| || ||||||| || |||||||||||||||||||
Sbjct: 2991 gagcttcgcggtgggcaggttgttcaccaggatctggaatgccaccgtca 2942



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 326  agtcaatacccgaaccaccac 346
            |||||||||||||||||||||
Sbjct: 3469 agtcaatacccgaaccaccac 3449
to top
>emb|AJ250984.1|ZMA250984 Zea mays mRNA for OCL2 protein (ocl2 gene)
          Length = 2660

 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 89/107 (83%)
 Strand = Plus / Minus

                                                                        
Query: 501  gccgtcttgatcttcttgatagtgcaggagataagattgttcacggtctcgaccgattcc 560
            |||| ||||||||||| ||| || || ||||| ||  ||| |||||| || || || |||
Sbjct: 2156 gccgccttgatcttctcgatggtacatgagatgaggctgtacacggtgtccactgactcc 2097

                                                           
Query: 561  actgtgagcttggcggtgggctggctgttcacaagaatctggaatgc 607
            || || ||||| || |||||||||||||||||||| |||||||||||
Sbjct: 2096 accgtcagctttgctgtgggctggctgttcacaaggatctggaatgc 2050



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 40/43 (93%)
 Strand = Plus / Minus

                                                       
Query: 319  gaggccgagtcaatacccgaaccaccaccattgctctgtgcta 361
            ||||| |||||||||||||||||||| |||||||| |||||||
Sbjct: 2346 gaggctgagtcaatacccgaaccaccgccattgctgtgtgcta 2304



 Score = 48.1 bits (24), Expect = 0.035
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                    
Query: 410  ttgcgcggttcgttcttgactcag 433
            ||||||||||||||||||||||||
Sbjct: 2255 ttgcgcggttcgttcttgactcag 2232
to top
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 99/121 (81%)
 Strand = Plus / Plus

                                                                            
Query: 495      tgcagcgccgtcttgatcttcttgatagtgcaggagataagattgttcacggtctcgacc 554
                ||||| |||| ||||||||||| ||| ||||||||||  || ||| | ||||| ||||| 
Sbjct: 20267212 tgcagtgccgacttgatcttctggatggtgcaggagaggaggttgctgacggtgtcgacg 20267271

                                                                            
Query: 555      gattccactgtgagcttggcggtgggctggctgttcacaagaatctggaatgccaccgtc 614
                || ||||| |||||||| || || ||| || |||| || || |||||||| |||||||||
Sbjct: 20267272 gactccacggtgagcttcgccgtcggcaggttgttgacgagtatctggaacgccaccgtc 20267331

                 
Query: 615      a 615
                |
Sbjct: 20267332 a 20267332



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 326      agtcaatacccgaaccaccac 346
                |||||||||||||||||||||
Sbjct: 20266847 agtcaatacccgaaccaccac 20266867
to top
>dbj|AP005681.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1439_F07
          Length = 153743

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 99/121 (81%)
 Strand = Plus / Plus

                                                                         
Query: 495   tgcagcgccgtcttgatcttcttgatagtgcaggagataagattgttcacggtctcgacc 554
             ||||| |||| ||||||||||| ||| ||||||||||  || ||| | ||||| ||||| 
Sbjct: 46339 tgcagtgccgacttgatcttctggatggtgcaggagaggaggttgctgacggtgtcgacg 46398

                                                                         
Query: 555   gattccactgtgagcttggcggtgggctggctgttcacaagaatctggaatgccaccgtc 614
             || ||||| |||||||| || || ||| || |||| || || |||||||| |||||||||
Sbjct: 46399 gactccacggtgagcttcgccgtcggcaggttgttgacgagtatctggaacgccaccgtc 46458

              
Query: 615   a 615
             |
Sbjct: 46459 a 46459



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 326   agtcaatacccgaaccaccac 346
             |||||||||||||||||||||
Sbjct: 45974 agtcaatacccgaaccaccac 45994
to top
>dbj|AP005864.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OSJNBa0047P18
          Length = 169128

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 99/121 (81%)
 Strand = Plus / Plus

                                                                          
Query: 495    tgcagcgccgtcttgatcttcttgatagtgcaggagataagattgttcacggtctcgacc 554
              ||||| |||| ||||||||||| ||| ||||||||||  || ||| | ||||| ||||| 
Sbjct: 160712 tgcagtgccgacttgatcttctggatggtgcaggagaggaggttgctgacggtgtcgacg 160771

                                                                          
Query: 555    gattccactgtgagcttggcggtgggctggctgttcacaagaatctggaatgccaccgtc 614
              || ||||| |||||||| || || ||| || |||| || || |||||||| |||||||||
Sbjct: 160772 gactccacggtgagcttcgccgtcggcaggttgttgacgagtatctggaacgccaccgtc 160831

               
Query: 615    a 615
              |
Sbjct: 160832 a 160832



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 326    agtcaatacccgaaccaccac 346
              |||||||||||||||||||||
Sbjct: 160347 agtcaatacccgaaccaccac 160367
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>dbj|AK071877.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013040J18, full
            insert sequence
          Length = 2218

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 99/121 (81%)
 Strand = Plus / Minus

                                                                        
Query: 495  tgcagcgccgtcttgatcttcttgatagtgcaggagataagattgttcacggtctcgacc 554
            ||||| |||| ||||||||||| ||| ||||||||||  || ||| | ||||| ||||| 
Sbjct: 1642 tgcagtgccgacttgatcttctggatggtgcaggagaggaggttgctgacggtgtcgacg 1583

                                                                        
Query: 555  gattccactgtgagcttggcggtgggctggctgttcacaagaatctggaatgccaccgtc 614
            || ||||| |||||||| || || ||| || |||| || || |||||||| |||||||||
Sbjct: 1582 gactccacggtgagcttcgccgtcggcaggttgttgacgagtatctggaacgccaccgtc 1523

             
Query: 615  a 615
            |
Sbjct: 1522 a 1522



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 326  agtcaatacccgaaccaccac 346
            |||||||||||||||||||||
Sbjct: 2007 agtcaatacccgaaccaccac 1987
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>gb|AC148764.16| Medicago truncatula clone mth2-30o12, complete sequence
          Length = 107371

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                      
Query: 323   ccgagtcaatacccgaaccaccacc 347
             |||||||||||||||||||||||||
Sbjct: 25596 ccgagtcaatacccgaaccaccacc 25620
to top
>gb|AF067961.1|AF067961 Malus domestica homeodomain protein (h3) mRNA, complete cds
          Length = 2423

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                     
Query: 323  ccgagtcaatacccgaaccaccaccattgctctgtgctaag 363
            ||||||||||||||||||||||| | ||||  |||||||||
Sbjct: 2277 ccgagtcaatacccgaaccaccagccttgcattgtgctaag 2237
to top
>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome
          Length = 6093698

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 289     atggcactggggaaatacagcc 310
               ||||||||||||||||||||||
Sbjct: 3520927 atggcactggggaaatacagcc 3520948
to top
>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome
          Length = 5928787

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 289     atggcactggggaaatacagcc 310
               ||||||||||||||||||||||
Sbjct: 2665467 atggcactggggaaatacagcc 2665446
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>emb|AL844199.8| Mouse DNA sequence from clone RP23-39F22 on chromosome 4, complete
             sequence
          Length = 205589

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 271   aagaaatatctaaaatgcatgg 292
             ||||||||||||||||||||||
Sbjct: 95615 aagaaatatctaaaatgcatgg 95636
to top
>gb|AC158514.2| Mus musculus BAC clone RP24-480D16 from chromosome 12, complete
             sequence
          Length = 204825

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 195   agagagacgcacaaaacagag 215
             |||||||||||||||||||||
Sbjct: 84515 agagagacgcacaaaacagag 84535
to top
>gb|AC147065.2| Pan troglodytes BAC clone RP43-163G7 from 7, complete sequence
          Length = 167103

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 144    cccagcattcctgagcttcca 164
              |||||||||||||||||||||
Sbjct: 130358 cccagcattcctgagcttcca 130378
to top
>gb|AC154903.4| Mus musculus BAC clone RP23-414E24 from chromosome 12, complete
            sequence
          Length = 201338

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 195  agagagacgcacaaaacagag 215
            |||||||||||||||||||||
Sbjct: 8820 agagagacgcacaaaacagag 8800
to top
>gb|AC018647.5| Homo sapiens chromosome 7 clone RP11-379H18, complete sequence
          Length = 160732

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 144    cccagcattcctgagcttcca 164
              |||||||||||||||||||||
Sbjct: 139215 cccagcattcctgagcttcca 139195
to top
>emb|AL390723.21| Human DNA sequence from clone RP11-19G1 on chromosome 9 Contains part
             of a variant of the PTPRD gene for protein tyrosine
             phosphatase, receptor type, D (HPTP, PTPD, HPTPD),
             complete sequence
          Length = 94643

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 291   ggcactggggaaatacagccg 311
             |||||||||||||||||||||
Sbjct: 19820 ggcactggggaaatacagccg 19800
to top
>gb|AC068233.11| Homo sapiens chromosome 15, clone RP11-169M2, complete sequence
          Length = 177483

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 142   aacccagcattcctgagcttc 162
             |||||||||||||||||||||
Sbjct: 94469 aacccagcattcctgagcttc 94449
to top
>gb|AC182751.1| Gasterosteus aculeatus clone VMRC26-154K14, complete sequence
          Length = 166500

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 338   aaccaccaccattgctctgtgctaa 362
             |||||||||||||||| ||||||||
Sbjct: 39977 aaccaccaccattgctttgtgctaa 40001
to top
>gb|AC000100.2| Homo sapiens Chromosome 19 BAC Clone 959a10, complete sequence
          Length = 101912

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 206   caaaacagaggcaacgagccagccaaaag 234
             ||||||||||||| ||||| |||||||||
Sbjct: 44542 caaaacagaggcaccgagctagccaaaag 44514
to top
>gb|AC073649.3|AC073649 Homo sapiens clone RP11-823D8, complete sequence
          Length = 120951

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 206    caaaacagaggcaacgagccagccaaaag 234
              ||||||||||||| ||||| |||||||||
Sbjct: 102359 caaaacagaggcaccgagctagccaaaag 102331
to top
>gb|AC010682.3| Homo sapiens BAC clone RP11-251M8 from Y, complete sequence
          Length = 145383

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 206    caaaacagaggcaacgagccagccaaaag 234
              ||||||||||||| ||||| |||||||||
Sbjct: 121766 caaaacagaggcaccgagctagccaaaag 121794
to top
>ref|NG_004755.1| Homo sapiens chromosome Y palindromes P1, P2, P3 and inverted repeat IR2
               (P1-P2-P3-IR2@) on chromosome Y
          Length = 4538292

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                            
Query: 206     caaaacagaggcaacgagccagccaaaag 234
               ||||||||||||| ||||| |||||||||
Sbjct: 3958563 caaaacagaggcaccgagctagccaaaag 3958591



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                            
Query: 206     caaaacagaggcaacgagccagccaaaag 234
               ||||||||||||| ||||| |||||||||
Sbjct: 2089771 caaaacagaggcaccgagctagccaaaag 2089743
to top
>ref|NM_116298.2| Arabidopsis thaliana ANL2 (ANTHOCYANINLESS 2); transcription factor
            AT4G00730 (ANL2) mRNA, complete cds
          Length = 3174

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 326  agtcaatacccgaaccacca 345
            ||||||||||||||||||||
Sbjct: 3018 agtcaatacccgaaccacca 2999



 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 412  gcgcggttcgttcttgactc 431
            ||||||||||||||||||||
Sbjct: 2917 gcgcggttcgttcttgactc 2898
to top
>ref|XM_467209.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1672

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 520 tagtgcaggagataagattg 539
           ||||||||||||||||||||
Sbjct: 739 tagtgcaggagataagattg 758
to top
>gb|CP000358.1| Deinococcus geothermalis DSM 11300 plasmid 1, complete sequence
          Length = 574126

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 333    acccgaaccaccaccattgc 352
              ||||||||||||||||||||
Sbjct: 490925 acccgaaccaccaccattgc 490906
to top
>emb|CR956635.11| Pig DNA sequence from clone CH242-184L20 on chromosome 17, complete
             sequence
          Length = 211741

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 267   cttgaagaaatatctaaaat 286
             ||||||||||||||||||||
Sbjct: 48642 cttgaagaaatatctaaaat 48661
to top
>gb|AF328842.1| Picea abies homeodomain protein HB2 mRNA, complete cds
          Length = 3110

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 325  gagtcaatacccgaaccaccaccattgc 352
            ||||||||||||||||||| ||| ||||
Sbjct: 2996 gagtcaatacccgaaccactacccttgc 2969
to top
>gb|AY368623.1| Sus scrofa collagen type V alpha 2 (COL5A2) mRNA, partial sequence
          Length = 838

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 21  ttgattgcaaaataaattcc 40
           ||||||||||||||||||||
Sbjct: 103 ttgattgcaaaataaattcc 122
to top
>gb|AC134265.6| Rattus norvegicus 13 BAC CH230-151K3 (Children's Hospital Oakland
              Research Institute) complete sequence
          Length = 209981

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 268    ttgaagaaatatctaaaatg 287
              ||||||||||||||||||||
Sbjct: 157323 ttgaagaaatatctaaaatg 157304
to top
>gb|AC132315.4| Mus musculus BAC clone RP24-234J3 from chromosome 12, complete sequence
          Length = 181828

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 151   ttcctgagcttccacttgcatacc 174
             |||||||||||||||| |||||||
Sbjct: 45022 ttcctgagcttccactggcatacc 44999
to top
>gb|AC165271.2| Mus musculus BAC clone RP24-424G16 from chromosome 16, complete sequence
          Length = 165496

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 578    gggctggctgttcacaagaa 597
              ||||||||||||||||||||
Sbjct: 144768 gggctggctgttcacaagaa 144787
to top
>emb|AL606693.3|OSJN00109 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0076A11,
             complete sequence
          Length = 127419

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 208   aaacagaggcaacgagccagccaa 231
             |||||||| |||||||||||||||
Sbjct: 89979 aaacagagccaacgagccagccaa 89956
to top
>emb|AL161472.2|ATCHRIV2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 2
          Length = 197975

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 412    gcgcggttcgttcttgactc 431
              ||||||||||||||||||||
Sbjct: 106303 gcgcggttcgttcttgactc 106322



 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 326    agtcaatacccgaaccacca 345
              ||||||||||||||||||||
Sbjct: 106202 agtcaatacccgaaccacca 106221
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>emb|AL603702.14| Mouse DNA sequence from clone RP23-406A14 on chromosome 11 Contains a
             protease (prosome, macropain) 26S subunit ATPase 1 (Psmc1)
             pseudogene and a CpG island, complete sequence
          Length = 197265

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 337   gaaccaccaccattgctctg 356
             ||||||||||||||||||||
Sbjct: 63006 gaaccaccaccattgctctg 63025
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>gb|AE006025.1| Caulobacter crescentus CB15 section 351 of 359 of the complete genome
          Length = 10596

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 568  gcttggcggtgggctggctg 587
            ||||||||||||||||||||
Sbjct: 9277 gcttggcggtgggctggctg 9258
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>gb|AC104246.3| Homo sapiens chromosome 8, clone RP11-1073L1, complete sequence
          Length = 170284

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 2      atctgaactttggccggccttgat 25
              ||||||||||||||| ||||||||
Sbjct: 126441 atctgaactttggcctgccttgat 126418
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>gb|AC046174.6| Homo sapiens chromosome 8, clone RP11-621B3, complete sequence
          Length = 161619

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 2     atctgaactttggccggccttgat 25
             ||||||||||||||| ||||||||
Sbjct: 14825 atctgaactttggcctgccttgat 14802
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>gb|AY062100.1| Arabidopsis thaliana AT4g00730/f6n23_10 mRNA sequence
          Length = 2075

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 326  agtcaatacccgaaccacca 345
            ||||||||||||||||||||
Sbjct: 1938 agtcaatacccgaaccacca 1919



 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 412  gcgcggttcgttcttgactc 431
            ||||||||||||||||||||
Sbjct: 1837 gcgcggttcgttcttgactc 1818
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>gb|CP000232.1| Moorella thermoacetica ATCC 39073, complete genome
          Length = 2628784

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 447     cggtcatccccaaggcaaaatcca 470
               ||||||||||| ||||||||||||
Sbjct: 2038679 cggtcatcccccaggcaaaatcca 2038702
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>emb|BX827413.1|CNS0A2GQ Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS51ZF02 of Adult vegetative tissue of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 3144

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 326  agtcaatacccgaaccacca 345
            ||||||||||||||||||||
Sbjct: 2957 agtcaatacccgaaccacca 2938



 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 412  gcgcggttcgttcttgactc 431
            ||||||||||||||||||||
Sbjct: 2856 gcgcggttcgttcttgactc 2837
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>gb|DQ345554.1| Pinctada martensi clone M5-10 microsatellite sequence
          Length = 191

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 584 gctgttcacaagaatctgga 603
           ||||||||||||||||||||
Sbjct: 18  gctgttcacaagaatctgga 37
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>dbj|AP004096.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1743_B12
          Length = 175645

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 520   tagtgcaggagataagattg 539
             ||||||||||||||||||||
Sbjct: 25094 tagtgcaggagataagattg 25113
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>gb|AF058919.2|F6N23 Arabidopsis thaliana BAC F6N23
          Length = 91849

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 412   gcgcggttcgttcttgactc 431
             ||||||||||||||||||||
Sbjct: 87429 gcgcggttcgttcttgactc 87448



 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 326   agtcaatacccgaaccacca 345
             ||||||||||||||||||||
Sbjct: 87328 agtcaatacccgaaccacca 87347
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>dbj|AK064814.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000E09, full
           insert sequence
          Length = 1673

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 520 tagtgcaggagataagattg 539
           ||||||||||||||||||||
Sbjct: 739 tagtgcaggagataagattg 758
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>emb|BX470100.6| Zebrafish DNA sequence from clone DKEY-239K7 in linkage group 18,
             complete sequence
          Length = 117304

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 58    cagacattatttggcagatagctt 81
             |||||||||||||||| |||||||
Sbjct: 61196 cagacattatttggcatatagctt 61173
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>gb|AF077335.1|AF077335 Arabidopsis thaliana Anthocyaninless2 (ANL2) gene, complete cds
          Length = 9277

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 412  gcgcggttcgttcttgactc 431
            ||||||||||||||||||||
Sbjct: 6614 gcgcggttcgttcttgactc 6595
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>dbj|AP003154.2| Mus musculus genomic DN, chromosome 16 clone:RP21-564B5, complete
             sequence
          Length = 111402

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 578   gggctggctgttcacaagaa 597
             ||||||||||||||||||||
Sbjct: 66677 gggctggctgttcacaagaa 66658
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>dbj|AP003153.1| Mus musculus genomic DNA, chromosome 16q clone:RP21-485C23, complete
            sequences
          Length = 156444

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 578  gggctggctgttcacaagaa 597
            ||||||||||||||||||||
Sbjct: 2705 gggctggctgttcacaagaa 2686
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>gb|AC154237.1| Mus musculus BAC clone RP24-162O18 from 17, complete sequence
          Length = 168481

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 145   ccagcattcctgagcttcca 164
             ||||||||||||||||||||
Sbjct: 62548 ccagcattcctgagcttcca 62529
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>emb|CT030190.9| Mouse DNA sequence from clone RP23-115D20 on chromosome 16, complete
              sequence
          Length = 228196

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 578    gggctggctgttcacaagaa 597
              ||||||||||||||||||||
Sbjct: 189220 gggctggctgttcacaagaa 189201
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>gb|U85254.1|ATU85254 Arabidopsis thaliana homeodomain protein AHDP mRNA, complete cds
          Length = 2953

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 326  agtcaatacccgaaccacca 345
            ||||||||||||||||||||
Sbjct: 2838 agtcaatacccgaaccacca 2819



 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 412  gcgcggttcgttcttgactc 431
            ||||||||||||||||||||
Sbjct: 2737 gcgcggttcgttcttgactc 2718
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>gb|U34743.1|PSU34743 Phalaenopsis sp. 'hybrid SM9108' homeobox protein mRNA, complete cds
          Length = 3060

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 325  gagtcaatacccgaaccaccaccattgc 352
            |||||||||||||||||| |||| ||||
Sbjct: 2798 gagtcaatacccgaaccaacacccttgc 2771


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,009,083
Number of Sequences: 3902068
Number of extensions: 5009083
Number of successful extensions: 85004
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 84680
Number of HSP's gapped (non-prelim): 320
length of query: 622
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 599
effective length of database: 17,143,297,704
effective search space: 10268835324696
effective search space used: 10268835324696
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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