>PACC_FUSOX (Q870A3) pH-response transcription factor pacC/RIM101|
          Length = 609

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 19/61 (31%), Positives = 22/61 (36%)
 Frame = -3

Query: 577 DGSDPVDYSTTPPKSPESNSDRAWRMLNKPLQKSGSENFGDVLERRNPLAFGHFANHPPG 398
           D    ++Y   PPK P S  D   +M                  R N  AF H A HP G
Sbjct: 161 DPQGGLNYRPQPPKGPSSYYDHTGQM------------------RTNAAAFAHQAGHPSG 202

Query: 397 G 395
           G
Sbjct: 203 G 203

>PACC_GIBMO (Q873X0) pH-response transcription factor pacC/RIM101|
          Length = 613

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 19/61 (31%), Positives = 22/61 (36%)
 Frame = -3

Query: 577 DGSDPVDYSTTPPKSPESNSDRAWRMLNKPLQKSGSENFGDVLERRNPLAFGHFANHPPG 398
           D    ++Y   PPK P S  D   +M                  R N  AF H A HP G
Sbjct: 164 DPQGGLNYRPQPPKGPSSYYDHTGQM------------------RTNAAAFAHQAGHPSG 205

Query: 397 G 395
           G
Sbjct: 206 G 206

>SYV_WOLPM (Q73HS9) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)|
           (ValRS)
          Length = 864

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = -2

Query: 383 RHDLPI*FPIDREGHQSIHPEHCFWW*RARYNEEVWLLLVQVQNPW*TDWGVTG 222
           +H+LP+   ID++G  S+H  H          EE+W   + V   W    G TG
Sbjct: 281 KHNLPMKIIIDQDGRMSLHSVH-------GQKEEIW---IPVSGHWDDTIGATG 324

>YC66L_SYNY3 (Q55823) Ycf66-like protein|
          Length = 337

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 17/60 (28%), Positives = 25/60 (41%)
 Frame = -3

Query: 580 WDGSDPVDYSTTPPKSPESNSDRAWRMLNKPLQKSGSENFGDVLERRNPLAFGHFANHPP 401
           WD   P     T    PE+ +D A     +P     +++FGD  ER  P     + + PP
Sbjct: 214 WDDPTPSRRPPTRRPRPEAGNDPAPSRRPRPSNNPPNDSFGDRPERNAPRNARPYEDEPP 273

>SYM_METAC (Q8TIU5) Methionyl-tRNA synthetase (EC 6.1.1.10) (Methionine--tRNA|
           ligase) (MetRS)
          Length = 712

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 30/149 (20%), Positives = 55/149 (36%), Gaps = 11/149 (7%)
 Frame = -3

Query: 580 WDGSDPVDYSTTPP---------KSPESNSDRAWRMLNKPLQKSGSENFGDVLERRNPLA 428
           W G D +D+   P           S     + +WR+L + +        G+ L R    A
Sbjct: 344 WVGEDYLDHGFHPDLLRYYLASYTSHTKELNFSWRVLQEKINAELVAVLGNFLYRTMLFA 403

Query: 427 FGHFANHPPGGSTPNVMICPYDFPLTEKDIRAYIPNIAF--GGEEPVTMKRFGSFWFKSR 254
           F ++   P G   P V     +     K+++  +    F    +  + +  FG+ +F+S 
Sbjct: 404 FKNYGEVPEGKLEPEVSA---EIEEALKEVKEAMAEYEFKKAVDSAMALASFGNTYFQSH 460

Query: 253 TPGKPTGESPVLRTLVLVSTRSVCDEELY 167
            P K           ++   RS C + +Y
Sbjct: 461 EPWK-----------LIKEDRSACGQVIY 478

>GFRA1_RAT (Q62997) GDNF family receptor alpha-1 precursor (GFR-alpha-1) (GDNF|
           receptor alpha) (GDNFR-alpha) (TGF-beta-related
           neurotrophic factor receptor 1) (RET ligand 1)
          Length = 468

 Score = 29.6 bits (65), Expect = 6.6
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = -3

Query: 577 DGSDPVDYSTTPP-KSPESNSDRAWRMLNKPLQKSGSEN 464
           +GSD   +   PP ++  + +  A+R+ NKPL  +GSEN
Sbjct: 347 NGSDVTMWQPAPPVQTTTATTTTAFRVKNKPLGPAGSEN 385

>DCR2_YEAST (Q05924) Phosphatase DCR2 (EC 3.1.-.-) (Dosage-dependent cell cycle|
           regulator 2)
          Length = 578

 Score = 29.6 bits (65), Expect = 6.6
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 356 WEIIWADHDVRGRPSRWVVREMTKSQXISPFK 451
           W ++W +HD  G  +RW + E+      S FK
Sbjct: 331 WAMVWGNHDDEGSLTRWQLSEIASVLPYSLFK 362

>SHAN2_HUMAN (Q9UPX8) SH3 and multiple ankyrin repeat domains protein 2 (Shank2)|
          Length = 1253

 Score = 29.6 bits (65), Expect = 6.6
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = -3

Query: 568  DPVDYSTTPPKSPESNSDRAWRMLNKPLQKSGSENFGDVLERRNPLAFGHFAN 410
            + VD    PP +P      A   + K LQ   S+ +GDV E ++P+  G  AN
Sbjct: 974  EDVDSFVIPPPAPPPPPGSAQPGMAKVLQPRTSKLWGDVTEIKSPILSGPKAN 1026

>CATB_CHICK (P43233) Cathepsin B precursor (EC 3.4.22.1) (Cathepsin B1)|
           [Contains: Cathepsin B light chain; Cathepsin B heavy
           chain]
          Length = 340

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 6/28 (21%)
 Frame = -2

Query: 254 NPW*TDWGVTG------SEDACASEYEV 189
           N W TDWG+TG       ED C  E E+
Sbjct: 299 NSWNTDWGITGFFKILRGEDHCGIESEI 326


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,432,148
Number of Sequences: 219361
Number of extensions: 2102052
Number of successful extensions: 5070
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5067
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4986986160
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)