ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd13p04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_466918.1| Oryza sativa (japonica cultivar-group), mRNA 347 3e-92
2dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 347 3e-92
3dbj|AP004192.3| Oryza sativa (japonica cultivar-group) genomic D... 347 3e-92
4dbj|AP004069.2| Oryza sativa (japonica cultivar-group) genomic D... 347 3e-92
5dbj|AK101737.1| Oryza sativa (japonica cultivar-group) cDNA clon... 347 3e-92
6dbj|AK106596.1| Oryza sativa (japonica cultivar-group) cDNA clon... 305 9e-80
7gb|AC118932.7| Mus musculus chromosome 5, clone RP24-147H20, com... 44 0.51
8gb|AC157928.4| Mus musculus chromosome 5, clone RP24-119I9, comp... 44 0.51
9dbj|AK032760.1| Mus musculus 12 days embryo male wolffian duct i... 44 0.51
10dbj|AB063124.1| Coturnix japonica DNA, microsatellite locus GUJ0056 42 2.0
11gb|AC168049.2| Mus musculus BAC clone RP23-246L6 from chromosome... 40 7.9
12emb|CR450793.12| Zebrafish DNA sequence from clone DKEY-48M5 in ... 40 7.9
13gb|AC125110.4| Mus musculus BAC clone RP24-235E14 from chromosom... 40 7.9
14emb|AL161798.23| Human DNA sequence from clone RP11-108M11 on ch... 40 7.9
15emb|AL844589.3| Mouse DNA sequence from clone RP23-139C9 on chro... 40 7.9
16gb|AC158232.2| Mus musculus BAC clone RP24-200M15 from chromosom... 40 7.9
17gb|AC067964.18| Mus Musculus Strain C57BL6/J Chromosome 5 RP23-3... 40 7.9
18gb|AC077689.9| Mus Musculus Strain C57BL6/J Chromosome 5 RP23-30... 40 7.9
19gb|AC003672.3| Arabidopsis thaliana chromosome 2 clone F16B22 ma... 40 7.9
20gb|AC006535.7|AC006535 Genomic sequence for Arabidopsis thaliana... 40 7.9
21gb|AF067845.1|AF067845 Homo sapiens clone P1-4248, complete sequ... 40 7.9
22gb|AC162939.6| Mus musculus BAC clone RP23-97G12 from chromosome... 40 7.9
23gb|AE017262.2| Listeria monocytogenes str. 4b F2365, complete ge... 40 7.9
24gb|AC110288.10| Homo sapiens chromosome 8, clone CTD-2281E23, co... 40 7.9

>ref|XM_466918.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1761

 Score =  347 bits (175), Expect = 3e-92
 Identities = 425/508 (83%), Gaps = 3/508 (0%)
 Strand = Plus / Minus

                                                                        
Query: 78   aactagctccatctcctcttatcctcttcttcatcaactggggtataccactctggccgc 137
            |||||||||||||  ||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct: 1375 aactagctccatcgtctcttatcctcttcttcatcaactgggatataccactctggtcgc 1316

                                                                        
Query: 138  ccctttgagctgctgtacctgtagttcaggtagagttcttcgtcacatacggacctcgta 197
              ||| ||| ||||||||| |||||||||| |||| ||||| ||||||| |||||| |||
Sbjct: 1315 ttcttcgagttgctgtaccggtagttcaggaagagctcttcatcacatatggaccttgta 1256

                                                                        
Query: 198  ctcactagcacaagcgtcctcagaaccggtgactccccagtcggtttaccaggggttctg 257
            ||||| ||||| || ||| ||||||| || ||||||||   | | |||||||    ||  
Sbjct: 1255 ctcaccagcactagagtcttcagaactggagactccccttcctgattaccagaacgtcca 1196

                                                                        
Query: 258  gacttgaaccagaaggagccaaacctcttcattgtaacgggctcttc---accaccaaaa 314
            |||||||||||||| || ||||| |  ||||||||||||||||||||   ||||||||||
Sbjct: 1195 gacttgaaccagaatgaaccaaatcgtttcattgtaacgggctcttcttcaccaccaaaa 1136

                                                                        
Query: 315  gcaatgttcgggatgtatgctctgatgtccttctctgtcaatgggaaatcatatgggcag 374
            | |||||| ||||||||  |||| |||||||||||||||||||| |||||||||||||||
Sbjct: 1135 gtaatgttagggatgtagactctcatgtccttctctgtcaatggaaaatcatatgggcag 1076

                                                                        
Query: 375  atcatgacgttaggggtcgaccctcccggtgggtggttcgcgaaatgaccaaaagccagn 434
            |||||||| || || || ||||||   ||||| ||||| || || ||||||||||| || 
Sbjct: 1075 atcatgacattgggagttgacccttttggtggatggtttgcaaagtgaccaaaagcgagt 1016

                                                                        
Query: 435  ggatttcgccgttcaagcacatcaccaaagttttcactgccactcttctgcaggggcttg 494
            || ||||| ||||||||||| || ||||| |||||| ||  || ||||| ||| ||||||
Sbjct: 1015 gggtttcgtcgttcaagcacttccccaaaattttcagtgtgacccttcttcagaggcttg 956

                                                                        
Query: 495  ttaagcatcctccatgcccggtcagagttgctctctgggcttttgggtggcgttgtactg 554
             | ||||||||||||||||  ||||||||||||||| ||||||||| ||||  || | ||
Sbjct: 955  ctgagcatcctccatgccctatcagagttgctctcttggcttttggatggcactgcattg 896

                                        
Query: 555  taatccactggatctgaaccatcccata 582
            ||||||||   |||||| ||||||||||
Sbjct: 895  taatccaccaaatctgagccatcccata 868



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  347 bits (175), Expect = 3e-92
 Identities = 425/508 (83%), Gaps = 3/508 (0%)
 Strand = Plus / Minus

                                                                            
Query: 78       aactagctccatctcctcttatcctcttcttcatcaactggggtataccactctggccgc 137
                |||||||||||||  ||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct: 25456299 aactagctccatcgtctcttatcctcttcttcatcaactgggatataccactctggtcgc 25456240

                                                                            
Query: 138      ccctttgagctgctgtacctgtagttcaggtagagttcttcgtcacatacggacctcgta 197
                  ||| ||| ||||||||| |||||||||| |||| ||||| ||||||| |||||| |||
Sbjct: 25456239 ttcttcgagttgctgtaccggtagttcaggaagagctcttcatcacatatggaccttgta 25456180

                                                                            
Query: 198      ctcactagcacaagcgtcctcagaaccggtgactccccagtcggtttaccaggggttctg 257
                ||||| ||||| || ||| ||||||| || ||||||||   | | |||||||    ||  
Sbjct: 25456179 ctcaccagcactagagtcttcagaactggagactccccttcctgattaccagaacgtcca 25456120

                                                                            
Query: 258      gacttgaaccagaaggagccaaacctcttcattgtaacgggctcttc---accaccaaaa 314
                |||||||||||||| || ||||| |  ||||||||||||||||||||   ||||||||||
Sbjct: 25456119 gacttgaaccagaatgaaccaaatcgtttcattgtaacgggctcttcttcaccaccaaaa 25456060

                                                                            
Query: 315      gcaatgttcgggatgtatgctctgatgtccttctctgtcaatgggaaatcatatgggcag 374
                | |||||| ||||||||  |||| |||||||||||||||||||| |||||||||||||||
Sbjct: 25456059 gtaatgttagggatgtagactctcatgtccttctctgtcaatggaaaatcatatgggcag 25456000

                                                                            
Query: 375      atcatgacgttaggggtcgaccctcccggtgggtggttcgcgaaatgaccaaaagccagn 434
                |||||||| || || || ||||||   ||||| ||||| || || ||||||||||| || 
Sbjct: 25455999 atcatgacattgggagttgacccttttggtggatggtttgcaaagtgaccaaaagcgagt 25455940

                                                                            
Query: 435      ggatttcgccgttcaagcacatcaccaaagttttcactgccactcttctgcaggggcttg 494
                || ||||| ||||||||||| || ||||| |||||| ||  || ||||| ||| ||||||
Sbjct: 25455939 gggtttcgtcgttcaagcacttccccaaaattttcagtgtgacccttcttcagaggcttg 25455880

                                                                            
Query: 495      ttaagcatcctccatgcccggtcagagttgctctctgggcttttgggtggcgttgtactg 554
                 | ||||||||||||||||  ||||||||||||||| ||||||||| ||||  || | ||
Sbjct: 25455879 ctgagcatcctccatgccctatcagagttgctctcttggcttttggatggcactgcattg 25455820

                                            
Query: 555      taatccactggatctgaaccatcccata 582
                ||||||||   |||||| ||||||||||
Sbjct: 25455819 taatccaccaaatctgagccatcccata 25455792



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>dbj|AP004192.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1643_A10
          Length = 130037

 Score =  347 bits (175), Expect = 3e-92
 Identities = 425/508 (83%), Gaps = 3/508 (0%)
 Strand = Plus / Minus

                                                                          
Query: 78     aactagctccatctcctcttatcctcttcttcatcaactggggtataccactctggccgc 137
              |||||||||||||  ||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct: 111961 aactagctccatcgtctcttatcctcttcttcatcaactgggatataccactctggtcgc 111902

                                                                          
Query: 138    ccctttgagctgctgtacctgtagttcaggtagagttcttcgtcacatacggacctcgta 197
                ||| ||| ||||||||| |||||||||| |||| ||||| ||||||| |||||| |||
Sbjct: 111901 ttcttcgagttgctgtaccggtagttcaggaagagctcttcatcacatatggaccttgta 111842

                                                                          
Query: 198    ctcactagcacaagcgtcctcagaaccggtgactccccagtcggtttaccaggggttctg 257
              ||||| ||||| || ||| ||||||| || ||||||||   | | |||||||    ||  
Sbjct: 111841 ctcaccagcactagagtcttcagaactggagactccccttcctgattaccagaacgtcca 111782

                                                                          
Query: 258    gacttgaaccagaaggagccaaacctcttcattgtaacgggctcttc---accaccaaaa 314
              |||||||||||||| || ||||| |  ||||||||||||||||||||   ||||||||||
Sbjct: 111781 gacttgaaccagaatgaaccaaatcgtttcattgtaacgggctcttcttcaccaccaaaa 111722

                                                                          
Query: 315    gcaatgttcgggatgtatgctctgatgtccttctctgtcaatgggaaatcatatgggcag 374
              | |||||| ||||||||  |||| |||||||||||||||||||| |||||||||||||||
Sbjct: 111721 gtaatgttagggatgtagactctcatgtccttctctgtcaatggaaaatcatatgggcag 111662

                                                                          
Query: 375    atcatgacgttaggggtcgaccctcccggtgggtggttcgcgaaatgaccaaaagccagn 434
              |||||||| || || || ||||||   ||||| ||||| || || ||||||||||| || 
Sbjct: 111661 atcatgacattgggagttgacccttttggtggatggtttgcaaagtgaccaaaagcgagt 111602

                                                                          
Query: 435    ggatttcgccgttcaagcacatcaccaaagttttcactgccactcttctgcaggggcttg 494
              || ||||| ||||||||||| || ||||| |||||| ||  || ||||| ||| ||||||
Sbjct: 111601 gggtttcgtcgttcaagcacttccccaaaattttcagtgtgacccttcttcagaggcttg 111542

                                                                          
Query: 495    ttaagcatcctccatgcccggtcagagttgctctctgggcttttgggtggcgttgtactg 554
               | ||||||||||||||||  ||||||||||||||| ||||||||| ||||  || | ||
Sbjct: 111541 ctgagcatcctccatgccctatcagagttgctctcttggcttttggatggcactgcattg 111482

                                          
Query: 555    taatccactggatctgaaccatcccata 582
              ||||||||   |||||| ||||||||||
Sbjct: 111481 taatccaccaaatctgagccatcccata 111454



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>dbj|AP004069.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2,
           BAC clone:OJ1626_B09
          Length = 58749

 Score =  347 bits (175), Expect = 3e-92
 Identities = 425/508 (83%), Gaps = 3/508 (0%)
 Strand = Plus / Minus

                                                                       
Query: 78  aactagctccatctcctcttatcctcttcttcatcaactggggtataccactctggccgc 137
           |||||||||||||  ||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct: 849 aactagctccatcgtctcttatcctcttcttcatcaactgggatataccactctggtcgc 790

                                                                       
Query: 138 ccctttgagctgctgtacctgtagttcaggtagagttcttcgtcacatacggacctcgta 197
             ||| ||| ||||||||| |||||||||| |||| ||||| ||||||| |||||| |||
Sbjct: 789 ttcttcgagttgctgtaccggtagttcaggaagagctcttcatcacatatggaccttgta 730

                                                                       
Query: 198 ctcactagcacaagcgtcctcagaaccggtgactccccagtcggtttaccaggggttctg 257
           ||||| ||||| || ||| ||||||| || ||||||||   | | |||||||    ||  
Sbjct: 729 ctcaccagcactagagtcttcagaactggagactccccttcctgattaccagaacgtcca 670

                                                                       
Query: 258 gacttgaaccagaaggagccaaacctcttcattgtaacgggctcttc---accaccaaaa 314
           |||||||||||||| || ||||| |  ||||||||||||||||||||   ||||||||||
Sbjct: 669 gacttgaaccagaatgaaccaaatcgtttcattgtaacgggctcttcttcaccaccaaaa 610

                                                                       
Query: 315 gcaatgttcgggatgtatgctctgatgtccttctctgtcaatgggaaatcatatgggcag 374
           | |||||| ||||||||  |||| |||||||||||||||||||| |||||||||||||||
Sbjct: 609 gtaatgttagggatgtagactctcatgtccttctctgtcaatggaaaatcatatgggcag 550

                                                                       
Query: 375 atcatgacgttaggggtcgaccctcccggtgggtggttcgcgaaatgaccaaaagccagn 434
           |||||||| || || || ||||||   ||||| ||||| || || ||||||||||| || 
Sbjct: 549 atcatgacattgggagttgacccttttggtggatggtttgcaaagtgaccaaaagcgagt 490

                                                                       
Query: 435 ggatttcgccgttcaagcacatcaccaaagttttcactgccactcttctgcaggggcttg 494
           || ||||| ||||||||||| || ||||| |||||| ||  || ||||| ||| ||||||
Sbjct: 489 gggtttcgtcgttcaagcacttccccaaaattttcagtgtgacccttcttcagaggcttg 430

                                                                       
Query: 495 ttaagcatcctccatgcccggtcagagttgctctctgggcttttgggtggcgttgtactg 554
            | ||||||||||||||||  ||||||||||||||| ||||||||| ||||  || | ||
Sbjct: 429 ctgagcatcctccatgccctatcagagttgctctcttggcttttggatggcactgcattg 370

                                       
Query: 555 taatccactggatctgaaccatcccata 582
           ||||||||   |||||| ||||||||||
Sbjct: 369 taatccaccaaatctgagccatcccata 342



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>dbj|AK101737.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033061I23, full
            insert sequence
          Length = 1760

 Score =  347 bits (175), Expect = 3e-92
 Identities = 425/508 (83%), Gaps = 3/508 (0%)
 Strand = Plus / Minus

                                                                        
Query: 78   aactagctccatctcctcttatcctcttcttcatcaactggggtataccactctggccgc 137
            |||||||||||||  ||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct: 1374 aactagctccatcgtctcttatcctcttcttcatcaactgggatataccactctggtcgc 1315

                                                                        
Query: 138  ccctttgagctgctgtacctgtagttcaggtagagttcttcgtcacatacggacctcgta 197
              ||| ||| ||||||||| |||||||||| |||| ||||| ||||||| |||||| |||
Sbjct: 1314 ttcttcgagttgctgtaccggtagttcaggaagagctcttcatcacatatggaccttgta 1255

                                                                        
Query: 198  ctcactagcacaagcgtcctcagaaccggtgactccccagtcggtttaccaggggttctg 257
            ||||| ||||| || ||| ||||||| || ||||||||   | | |||||||    ||  
Sbjct: 1254 ctcaccagcactagagtcttcagaactggagactccccttcctgattaccagaacgtcca 1195

                                                                        
Query: 258  gacttgaaccagaaggagccaaacctcttcattgtaacgggctcttc---accaccaaaa 314
            |||||||||||||| || ||||| |  ||||||||||||||||||||   ||||||||||
Sbjct: 1194 gacttgaaccagaatgaaccaaatcgtttcattgtaacgggctcttcttcaccaccaaaa 1135

                                                                        
Query: 315  gcaatgttcgggatgtatgctctgatgtccttctctgtcaatgggaaatcatatgggcag 374
            | |||||| ||||||||  |||| |||||||||||||||||||| |||||||||||||||
Sbjct: 1134 gtaatgttagggatgtagactctcatgtccttctctgtcaatggaaaatcatatgggcag 1075

                                                                        
Query: 375  atcatgacgttaggggtcgaccctcccggtgggtggttcgcgaaatgaccaaaagccagn 434
            |||||||| || || || ||||||   ||||| ||||| || || ||||||||||| || 
Sbjct: 1074 atcatgacattgggagttgacccttttggtggatggtttgcaaagtgaccaaaagcgagt 1015

                                                                        
Query: 435  ggatttcgccgttcaagcacatcaccaaagttttcactgccactcttctgcaggggcttg 494
            || ||||| ||||||||||| || ||||| |||||| ||  || ||||| ||| ||||||
Sbjct: 1014 gggtttcgtcgttcaagcacttccccaaaattttcagtgtgacccttcttcagaggcttg 955

                                                                        
Query: 495  ttaagcatcctccatgcccggtcagagttgctctctgggcttttgggtggcgttgtactg 554
             | ||||||||||||||||  ||||||||||||||| ||||||||| ||||  || | ||
Sbjct: 954  ctgagcatcctccatgccctatcagagttgctctcttggcttttggatggcactgcattg 895

                                        
Query: 555  taatccactggatctgaaccatcccata 582
            ||||||||   |||||| ||||||||||
Sbjct: 894  taatccaccaaatctgagccatcccata 867



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>dbj|AK106596.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-112-A06, full
           insert sequence
          Length = 2071

 Score =  305 bits (154), Expect = 9e-80
 Identities = 368/439 (83%), Gaps = 3/439 (0%)
 Strand = Plus / Minus

                                                                       
Query: 78  aactagctccatctcctcttatcctcttcttcatcaactggggtataccactctggccgc 137
           |||||||||||||  ||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct: 441 aactagctccatcgtctcttatcctcttcttcatcaactgggatataccactctggtcgc 382

                                                                       
Query: 138 ccctttgagctgctgtacctgtagttcaggtagagttcttcgtcacatacggacctcgta 197
             ||| ||| ||||||||| |||||||||| |||| ||||| ||||||| |||||| |||
Sbjct: 381 ttcttcgagttgctgtaccggtagttcaggaagagctcttcatcacatatggaccttgta 322

                                                                       
Query: 198 ctcactagcacaagcgtcctcagaaccggtgactccccagtcggtttaccaggggttctg 257
           ||||| ||||| || ||| ||||||| || ||||||||   | | |||||||    ||  
Sbjct: 321 ctcaccagcactagagtcttcagaactggagactccccttcctgattaccagaacgtcca 262

                                                                       
Query: 258 gacttgaaccagaaggagccaaacctcttcattgtaacgggctcttc---accaccaaaa 314
           |||||||||||||| || ||||| |  ||||||||||||||||||||   ||||||||||
Sbjct: 261 gacttgaaccagaatgaaccaaatcgtttcattgtaacgggctcttcttcaccaccaaaa 202

                                                                       
Query: 315 gcaatgttcgggatgtatgctctgatgtccttctctgtcaatgggaaatcatatgggcag 374
           | |||||| ||||||||  |||| |||||||||||||||||||| |||||||||||||||
Sbjct: 201 gtaatgttagggatgtagactctcatgtccttctctgtcaatggaaaatcatatgggcag 142

                                                                       
Query: 375 atcatgacgttaggggtcgaccctcccggtgggtggttcgcgaaatgaccaaaagccagn 434
           |||||||| || || || ||||||   ||||| ||||| || || ||||||||||| || 
Sbjct: 141 atcatgacattgggagttgacccttttggtggatggtttgcaaagtgaccaaaagcgagt 82

                                                                       
Query: 435 ggatttcgccgttcaagcacatcaccaaagttttcactgccactcttctgcaggggcttg 494
           || ||||| ||||||||||| || ||||| |||||| ||  || ||||| ||| ||||||
Sbjct: 81  gggtttcgtcgttcaagcacttccccaaaattttcagtgtgacccttcttcagaggcttg 22

                              
Query: 495 ttaagcatcctccatgccc 513
            | ||||||||||||||||
Sbjct: 21  ctgagcatcctccatgccc 3



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>gb|AC118932.7| Mus musculus chromosome 5, clone RP24-147H20, complete sequence
          Length = 168156

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 154    acctgtagttcaggtagagttc 175
              ||||||||||||||||||||||
Sbjct: 104786 acctgtagttcaggtagagttc 104807



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>gb|AC157928.4| Mus musculus chromosome 5, clone RP24-119I9, complete sequence
          Length = 157594

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 154  acctgtagttcaggtagagttc 175
            ||||||||||||||||||||||
Sbjct: 3593 acctgtagttcaggtagagttc 3614



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>dbj|AK032760.1| Mus musculus 12 days embryo male wolffian duct includes surrounding
           region cDNA, RIKEN full-length enriched library,
           clone:6720430F13 product:unclassifiable, full insert
           sequence
          Length = 3075

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 154 acctgtagttcaggtagagttc 175
           ||||||||||||||||||||||
Sbjct: 319 acctgtagttcaggtagagttc 340



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>dbj|AB063124.1| Coturnix japonica DNA, microsatellite locus GUJ0056
          Length = 183

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 479 cttctgcaggggcttgttaag 499
           |||||||||||||||||||||
Sbjct: 132 cttctgcaggggcttgttaag 112



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>gb|AC168049.2| Mus musculus BAC clone RP23-246L6 from chromosome 10, complete sequence
          Length = 229657

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 335    tctgatgtccttctctgtca 354
              ||||||||||||||||||||
Sbjct: 113433 tctgatgtccttctctgtca 113452



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>emb|CR450793.12| Zebrafish DNA sequence from clone DKEY-48M5 in linkage group 10,
             complete sequence
          Length = 130542

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 93    ctcttatcctcttcttcatc 112
             ||||||||||||||||||||
Sbjct: 45702 ctcttatcctcttcttcatc 45683



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>gb|AC125110.4| Mus musculus BAC clone RP24-235E14 from chromosome 18, complete sequence
          Length = 187634

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 516    tcagagttgctctctgggct 535
              ||||||||||||||||||||
Sbjct: 157392 tcagagttgctctctgggct 157411



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>emb|AL161798.23| Human DNA sequence from clone RP11-108M11 on chromosome 10 Contains the
             3' end of a novel gene  (FLJ37306), a novel gene and a
             ribosomal protein S27 (metallopanstimulin 1) (RPS27)
             pseudogene, complete sequence
          Length = 134438

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 90    ctcctcttatcctcttcttcatcaactg 117
             ||||| |||||||||||||||| |||||
Sbjct: 79196 ctcctgttatcctcttcttcattaactg 79169



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>emb|AL844589.3| Mouse DNA sequence from clone RP23-139C9 on chromosome 4, complete
             sequence
          Length = 162642

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 72    gttcagaactagctccatct 91
             ||||||||||||||||||||
Sbjct: 66593 gttcagaactagctccatct 66574



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>gb|AC158232.2| Mus musculus BAC clone RP24-200M15 from chromosome 12, complete
             sequence
          Length = 187225

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 90    ctcctcttatcctcttcttc 109
             ||||||||||||||||||||
Sbjct: 31475 ctcctcttatcctcttcttc 31456



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>gb|AC067964.18| Mus Musculus Strain C57BL6/J Chromosome 5 RP23-337K7, complete sequence
          Length = 219769

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 334    ctctgatgtccttctctgtcaatg 357
              ||||||| ||||||||||||||||
Sbjct: 104093 ctctgatttccttctctgtcaatg 104070



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>gb|AC077689.9| Mus Musculus Strain C57BL6/J Chromosome 5 RP23-301H20, complete sequence
          Length = 213462

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 334    ctctgatgtccttctctgtcaatg 357
              ||||||| ||||||||||||||||
Sbjct: 208654 ctctgatttccttctctgtcaatg 208631



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>gb|AC003672.3| Arabidopsis thaliana chromosome 2 clone F16B22 map m336, complete
             sequence
          Length = 109375

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 11    aaattcgattgctgatgaaa 30
             ||||||||||||||||||||
Sbjct: 78227 aaattcgattgctgatgaaa 78246



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>gb|AC006535.7|AC006535 Genomic sequence for Arabidopsis thaliana BAC T24P13 from chromosome I,
             complete sequence
          Length = 98630

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 96    ttatcctcttcttcatcaac 115
             ||||||||||||||||||||
Sbjct: 91584 ttatcctcttcttcatcaac 91603



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>gb|AF067845.1|AF067845 Homo sapiens clone P1-4248, complete sequence
          Length = 108932

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 470   actgccactcttctgcaggg 489
             ||||||||||||||||||||
Sbjct: 17766 actgccactcttctgcaggg 17747



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>gb|AC162939.6| Mus musculus BAC clone RP23-97G12 from chromosome 10, complete sequence
          Length = 247228

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 335   tctgatgtccttctctgtca 354
             ||||||||||||||||||||
Sbjct: 26105 tctgatgtccttctctgtca 26124



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>gb|AE017262.2| Listeria monocytogenes str. 4b F2365, complete genome
          Length = 2905187

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 308    accaaaagcaatgttcggga 327
              ||||||||||||||||||||
Sbjct: 548144 accaaaagcaatgttcggga 548125



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>gb|AC110288.10| Homo sapiens chromosome 8, clone CTD-2281E23, complete sequence
          Length = 102752

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 470   actgccactcttctgcaggg 489
             ||||||||||||||||||||
Sbjct: 94429 actgccactcttctgcaggg 94410


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,061,809
Number of Sequences: 3902068
Number of extensions: 5061809
Number of successful extensions: 114266
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 114160
Number of HSP's gapped (non-prelim): 100
length of query: 582
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 559
effective length of database: 17,143,297,704
effective search space: 9583103416536
effective search space used: 9583103416536
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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