ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd13p01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_197133.1| Oryza sativa (japonica cultivar-group) putative... 226 8e-56
2dbj|AK064354.1| Oryza sativa (japonica cultivar-group) cDNA clon... 218 2e-53
3ref|NM_197135.1| Oryza sativa (japonica cultivar-group) putative... 139 1e-29
4dbj|AK120578.1| Oryza sativa (japonica cultivar-group) cDNA clon... 139 1e-29
5dbj|AK120231.1| Oryza sativa (japonica cultivar-group) cDNA clon... 139 1e-29
6gb|AC023240.9| Oryza sativa chromosome 10 BAC OSJNBa0051D19 geno... 90 1e-14
7dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 90 1e-14
8gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 90 1e-14
9gb|DQ359158.1| Oryza sativa (japonica cultivar-group) chloroplas... 60 1e-05
10gb|AC123575.10| Medicago truncatula clone mth1-31p6, complete se... 54 6e-04
11gb|AC143330.4| Mus musculus BAC clone RP23-263D5 from chromosome... 48 0.039
12emb|Z68506.1|PSIEP110 P.sativum mRNA for 110 kD chloroplast inne... 46 0.16
13gb|U56419.1|PSU56419 Pisum sativum import intermediate associate... 46 0.16
14gb|AC124425.3| Mus musculus BAC clone RP24-230N16 from chromosom... 44 0.61
15gb|AC097061.2| Homo sapiens chromosome 1 clone RP11-415L24, comp... 44 0.61
16gb|AC011225.7|AC011225 Homo sapiens chromosome 18, clone RP11-10... 44 0.61
17gb|DQ481669.1| Takifugu rubripes HoxDb gene cluster, complete se... 42 2.4
18emb|BX469926.18| Zebrafish DNA sequence from clone DKEY-229E3 in... 42 2.4
19emb|AL954698.9| Zebrafish DNA sequence from clone CH211-233B16 i... 42 2.4
20dbj|AP006431.1| Lotus japonicus genomic DNA, chromosome 5, clone... 42 2.4
21dbj|AP006366.1| Lotus japonicus genomic DNA, chromosome 3, clone... 42 2.4
22dbj|AP004926.1| Lotus japonicus genomic DNA, chromosome 4, clone... 42 2.4
23gb|AC138093.7| Mus musculus chromosome 16, clone RP24-559J21, co... 40 9.6
24emb|BX908387.8| Zebrafish DNA sequence from clone DKEY-45B6 in l... 40 9.6
25gb|AC125355.4| Mus musculus BAC clone RP23-183C14 from 12, compl... 40 9.6
26ref|XM_663134.1| Cryptosporidium hominis TU502 hypothetical prot... 40 9.6
27emb|AL590416.4| Human DNA sequence from clone RP11-89C21 on chro... 40 9.6
28emb|AL645908.9| Mouse DNA sequence from clone RP23-24A24 on chro... 40 9.6
29emb|BX957309.6| Zebrafish DNA sequence from clone CH211-113P19 i... 40 9.6
30dbj|BA000038.2| Vibrio vulnificus YJ016 DNA, chromosome II, comp... 40 9.6
31gb|AC122721.2| Homo sapiens chromosome 5 clone RP11-91I13, compl... 40 9.6
32gb|AC093521.3| Homo sapiens chromosome 5 clone RP11-152P24, comp... 40 9.6
33gb|AC026392.7| Homo sapiens chromosome 10 clone RP11-238C10, com... 40 9.6
34dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete g... 40 9.6
35emb|BX569789.4| Zebrafish DNA sequence from clone DKEY-68O6 in l... 40 9.6
36gb|AC160646.2| Gallus gallus BAC clone CH261-24P2 from chromosom... 40 9.6
37ref|XM_628518.1| Cryptosporidium parvum Iowa II hypothetical pro... 40 9.6
38gb|AC010596.8| Homo sapiens chromosome 5 clone CTC-483B24, compl... 40 9.6
39gb|AC133652.6| Mus musculus BAC clone RP24-283H8 from chromosome... 40 9.6
40gb|AC160399.6| Mus musculus 6 BAC RP23-218B15 (Roswell Park Canc... 40 9.6
41gb|AC016738.6| Homo sapiens BAC clone RP11-426K3 from 2, complet... 40 9.6
42gb|AC084652.1|CBRG45O11 Caenorhabditis briggsae cosmid G45O11, c... 40 9.6
43gb|AC099627.10| Mus musculus chromosome 7, clone RP24-69E5, comp... 40 9.6
44gb|AC133086.4| Mus musculus BAC clone RP24-110I11 from 6, comple... 40 9.6
45gb|AE016796.1| Vibrio vulnificus CMCP6 chromosome II, complete s... 40 9.6
46gb|M96929.1|SYOCO2CMP Synechococcus sp. carbon dioxide concentra... 40 9.6
47gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome 40 9.6 
>ref|NM_197133.1| Oryza sativa (japonica cultivar-group) putative chloroplast inner
            envelope protein (OSJNBa0051D19.7), mRNA
          Length = 2967

 Score =  226 bits (114), Expect = 8e-56
 Identities = 195/222 (87%)
 Strand = Plus / Minus

                                                                        
Query: 479  aaagcagatgaaacgttttcttgaatcaacttcttcgcatgctccttgaacatgtcagca 538
            ||||| || |||| ||||||||||| ||||||||| ||||||||||||||||| ||||||
Sbjct: 1004 aaagctgacgaaatgttttcttgaaccaacttctttgcatgctccttgaacatctcagca 945

                                                                        
Query: 539  gcaacctcatcaaaaagtttatatgcaagttgtactctcctcacttcaatgagcgtgcct 598
            |||| ||||||| ||||||| |||||||||||| ||||||| ||||| || |||||||||
Sbjct: 944  gcaatctcatcagaaagtttgtatgcaagttgtgctctccttacttcgataagcgtgcct 885

                                                                        
Query: 599  atgtcaagacctcttccaatagacttgagctctaacgcatatagacttttggcattctcc 658
            |||||||||||||| |||||||||||||| | | | |||||||   |||||||||| |||
Sbjct: 884  atgtcaagacctctcccaatagacttgagttgtgatgcatataagattttggcattttcc 825

                                                      
Query: 659  cgcatagcaatatcaatctgatagtccgtgatcccgaaaaga 700
            ||||||||||||||||||||| | || |||| ||| ||||||
Sbjct: 824  cgcatagcaatatcaatctgagaatcagtgaccccaaaaaga 783



 Score =  149 bits (75), Expect = 1e-32
 Identities = 156/183 (85%)
 Strand = Plus / Minus

                                                                        
Query: 166  ttctgcttcacgcttccctagcccaaatatattcctcagctcattcaagggaccaagctt 225
            ||||||||||||||| || || ||||||||||||||||| | |||||| ||| | |||||
Sbjct: 1293 ttctgcttcacgcttgcccagtccaaatatattcctcagttgattcaaaggagcgagctt 1234

                                                                        
Query: 226  ctcatcatcaaggcgtccatctgaaagtacttctgttgtataggccgcatagagtatctt 285
            ||||||||| ||  |||||||||| ||||||||||||| |||||||  ||| |||| |||
Sbjct: 1233 ctcatcatccagatgtccatctgatagtacttctgttgcataggccctatatagtagctt 1174

                                                                        
Query: 286  tagatcaccaaccatcctatcatgatcaaaatctccagctaacgagataggtccaagccc 345
             |||||| || || ||||||||||||||   |||||| ||||||| ||||||||||| ||
Sbjct: 1173 gagatcatcagccctcctatcatgatcactctctccacctaacgaaataggtccaagacc 1114

               
Query: 346  acg 348
            |||
Sbjct: 1113 acg 1111
to top
>dbj|AK064354.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-108-A12, full
           insert sequence
          Length = 1967

 Score =  218 bits (110), Expect = 2e-53
 Identities = 194/222 (87%)
 Strand = Plus / Minus

                                                                       
Query: 479 aaagcagatgaaacgttttcttgaatcaacttcttcgcatgctccttgaacatgtcagca 538
           ||||| || |||| ||||||||||  ||||||||| ||||||||||||||||| ||||||
Sbjct: 402 aaagctgacgaaatgttttcttgagccaacttctttgcatgctccttgaacatctcagca 343

                                                                       
Query: 539 gcaacctcatcaaaaagtttatatgcaagttgtactctcctcacttcaatgagcgtgcct 598
           |||| ||||||| ||||||| |||||||||||| ||||||| ||||| || |||||||||
Sbjct: 342 gcaatctcatcagaaagtttgtatgcaagttgtgctctccttacttcgataagcgtgcct 283

                                                                       
Query: 599 atgtcaagacctcttccaatagacttgagctctaacgcatatagacttttggcattctcc 658
           |||||||||||||| |||||||||||||| | | | |||||||   |||||||||| |||
Sbjct: 282 atgtcaagacctctcccaatagacttgagttgtgatgcatataagattttggcattttcc 223

                                                     
Query: 659 cgcatagcaatatcaatctgatagtccgtgatcccgaaaaga 700
           ||||||||||||||||||||| | || |||| ||| ||||||
Sbjct: 222 cgcatagcaatatcaatctgagaatcagtgaccccaaaaaga 181



 Score =  149 bits (75), Expect = 1e-32
 Identities = 156/183 (85%)
 Strand = Plus / Minus

                                                                       
Query: 166 ttctgcttcacgcttccctagcccaaatatattcctcagctcattcaagggaccaagctt 225
           ||||||||||||||| || || ||||||||||||||||| | |||||| ||| | |||||
Sbjct: 715 ttctgcttcacgcttgcccagtccaaatatattcctcagttgattcaaaggagcgagctt 656

                                                                       
Query: 226 ctcatcatcaaggcgtccatctgaaagtacttctgttgtataggccgcatagagtatctt 285
           ||||||||| ||  |||||||||| ||||||||||||| |||||||  ||| |||| |||
Sbjct: 655 ctcatcatccagatgtccatctgatagtacttctgttgcataggccctatatagtagctt 596

                                                                       
Query: 286 tagatcaccaaccatcctatcatgatcaaaatctccagctaacgagataggtccaagccc 345
            |||||| || || ||||||||||||||   |||||| ||||||| ||||||||||| ||
Sbjct: 595 gagatcatcagccctcctatcatgatcactctctccacctaacgaaataggtccaagacc 536

              
Query: 346 acg 348
           |||
Sbjct: 535 acg 533
to top
>ref|NM_197135.1| Oryza sativa (japonica cultivar-group) putative chloroplast inner
           envelope protein (OSJNBa0051D19.5), mRNA
          Length = 1692

 Score =  139 bits (70), Expect = 1e-29
 Identities = 124/142 (87%)
 Strand = Plus / Minus

                                                                       
Query: 487 tgaaacgttttcttgaatcaacttcttcgcatgctccttgaacatgtcagcagcaacctc 546
           ||||| |||||||| ||  |||||||| ||||||||| ||||||| |||| ||||| |||
Sbjct: 984 tgaaatgttttcttcaactaacttctttgcatgctccctgaacatctcagaagcaatctc 925

                                                                       
Query: 547 atcaaaaagtttatatgcaagttgtactctcctcacttcaatgagcgtgcctatgtcaag 606
           |||| ||||||||||||| ||||||  |||||| |||||||| |  ||||||||||||||
Sbjct: 924 atcagaaagtttatatgctagttgtgatctccttacttcaattaatgtgcctatgtcaag 865

                                 
Query: 607 acctcttccaatagacttgagc 628
           |||||| |||||||||||||||
Sbjct: 864 acctctcccaatagacttgagc 843



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 108/134 (80%)
 Strand = Plus / Minus

                                                                        
Query: 158  atgatcgcttctgcttcacgcttccctagcccaaatatattcctcagctcattcaaggga 217
            ||||| |||||||||||   |||| | || ||||||||||||||||| | |||||| |  
Sbjct: 1314 atgattgcttctgcttcgtacttcgccagtccaaatatattcctcagttgattcaaagcc 1255

                                                                        
Query: 218  ccaagcttctcatcatcaaggcgtccatctgaaagtacttctgttgtataggccgcatag 277
             ||||||| ||||| | |||  |||||||||||||||| ||  ||| ||||||   ||||
Sbjct: 1254 gcaagcttgtcatcgttaagatgtccatctgaaagtacctccattgcataggcactatag 1195

                          
Query: 278  agtatctttagatc 291
            || |||||||||||
Sbjct: 1194 agcatctttagatc 1181
to top
>dbj|AK120578.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013135E03, full
           insert sequence
          Length = 1669

 Score =  139 bits (70), Expect = 1e-29
 Identities = 124/142 (87%)
 Strand = Plus / Minus

                                                                       
Query: 487 tgaaacgttttcttgaatcaacttcttcgcatgctccttgaacatgtcagcagcaacctc 546
           ||||| |||||||| ||  |||||||| ||||||||| ||||||| |||| ||||| |||
Sbjct: 983 tgaaatgttttcttcaactaacttctttgcatgctccctgaacatctcagaagcaatctc 924

                                                                       
Query: 547 atcaaaaagtttatatgcaagttgtactctcctcacttcaatgagcgtgcctatgtcaag 606
           |||| ||||||||||||| ||||||  |||||| |||||||| |  ||||||||||||||
Sbjct: 923 atcagaaagtttatatgctagttgtgatctccttacttcaattaatgtgcctatgtcaag 864

                                 
Query: 607 acctcttccaatagacttgagc 628
           |||||| |||||||||||||||
Sbjct: 863 acctctcccaatagacttgagc 842



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 108/134 (80%)
 Strand = Plus / Minus

                                                                        
Query: 158  atgatcgcttctgcttcacgcttccctagcccaaatatattcctcagctcattcaaggga 217
            ||||| |||||||||||   |||| | || ||||||||||||||||| | |||||| |  
Sbjct: 1291 atgattgcttctgcttcgtacttcgccagtccaaatatattcctcagttgattcaaagcc 1232

                                                                        
Query: 218  ccaagcttctcatcatcaaggcgtccatctgaaagtacttctgttgtataggccgcatag 277
             ||||||| ||||| | |||  |||||||||||||||| ||  ||| ||||||   ||||
Sbjct: 1231 gcaagcttgtcatcgttaagatgtccatctgaaagtacctccattgcataggcactatag 1172

                          
Query: 278  agtatctttagatc 291
            || |||||||||||
Sbjct: 1171 agcatctttagatc 1158
to top
>dbj|AK120231.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013043E07, full
           insert sequence
          Length = 2003

 Score =  139 bits (70), Expect = 1e-29
 Identities = 124/142 (87%)
 Strand = Plus / Minus

                                                                       
Query: 487 tgaaacgttttcttgaatcaacttcttcgcatgctccttgaacatgtcagcagcaacctc 546
           ||||| |||||||| ||  |||||||| ||||||||| ||||||| |||| ||||| |||
Sbjct: 845 tgaaatgttttcttcaactaacttctttgcatgctccctgaacatctcagaagcaatctc 786

                                                                       
Query: 547 atcaaaaagtttatatgcaagttgtactctcctcacttcaatgagcgtgcctatgtcaag 606
           |||| ||||||||||||| ||||||  |||||| |||||||| |  ||||||||||||||
Sbjct: 785 atcagaaagtttatatgctagttgtgatctccttacttcaattaatgtgcctatgtcaag 726

                                 
Query: 607 acctcttccaatagacttgagc 628
           |||||| |||||||||||||||
Sbjct: 725 acctctcccaatagacttgagc 704



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 108/134 (80%)
 Strand = Plus / Minus

                                                                        
Query: 158  atgatcgcttctgcttcacgcttccctagcccaaatatattcctcagctcattcaaggga 217
            ||||| |||||||||||   |||| | || ||||||||||||||||| | |||||| |  
Sbjct: 1153 atgattgcttctgcttcgtacttcgccagtccaaatatattcctcagttgattcaaagcc 1094

                                                                        
Query: 218  ccaagcttctcatcatcaaggcgtccatctgaaagtacttctgttgtataggccgcatag 277
             ||||||| ||||| | |||  |||||||||||||||| ||  ||| ||||||   ||||
Sbjct: 1093 gcaagcttgtcatcgttaagatgtccatctgaaagtacctccattgcataggcactatag 1034

                          
Query: 278  agtatctttagatc 291
            || |||||||||||
Sbjct: 1033 agcatctttagatc 1020
to top
>gb|AC023240.9| Oryza sativa chromosome 10 BAC OSJNBa0051D19 genomic sequence, complete
             sequence
          Length = 131984

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 63/69 (91%)
 Strand = Plus / Minus

                                                                         
Query: 542   acctcatcaaaaagtttatatgcaagttgtactctcctcacttcaatgagcgtgcctatg 601
             ||||||||| ||||||| |||||||||||| ||||||| ||||| || ||||||||||||
Sbjct: 53233 acctcatcagaaagtttgtatgcaagttgtgctctccttacttcgataagcgtgcctatg 53174

                      
Query: 602   tcaagacct 610
             |||||||||
Sbjct: 53173 tcaagacct 53165



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 58/64 (90%)
 Strand = Plus / Minus

                                                                         
Query: 479   aaagcagatgaaacgttttcttgaatcaacttcttcgcatgctccttgaacatgtcagca 538
             ||||| || |||| ||||||||||| ||||||||| ||||||||||||||||| ||||||
Sbjct: 53537 aaagctgacgaaatgttttcttgaaccaacttctttgcatgctccttgaacatctcagca 53478

                 
Query: 539   gcaa 542
             ||||
Sbjct: 53477 gcaa 53474



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 78/91 (85%)
 Strand = Plus / Minus

                                                                         
Query: 223   cttctcatcatcaaggcgtccatctgaaagtacttctgttgtataggccgcatagagtat 282
             |||||||||||| ||  |||||||||| ||||||||||||| |||||||  ||| |||| 
Sbjct: 54151 cttctcatcatccagatgtccatctgatagtacttctgttgcataggccctatatagtag 54092

                                            
Query: 283   ctttagatcaccaaccatcctatcatgatca 313
             ||| |||||| || || ||||||||||||||
Sbjct: 54091 cttgagatcatcagccctcctatcatgatca 54061



 Score = 73.8 bits (37), Expect = 7e-10
 Identities = 61/69 (88%)
 Strand = Plus / Minus

                                                                         
Query: 542   acctcatcaaaaagtttatatgcaagttgtactctcctcacttcaatgagcgtgcctatg 601
             ||||||||| ||||||||||||| ||||||  |||||| |||||||| |  |||||||||
Sbjct: 38502 acctcatcagaaagtttatatgctagttgtgatctccttacttcaattaatgtgcctatg 38443

                      
Query: 602   tcaagacct 610
             |||||||||
Sbjct: 38442 tcaagacct 38434



 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 63/72 (87%)
 Strand = Plus / Minus

                                                                         
Query: 607   acctcttccaatagacttgagctctaacgcatatagacttttggcattctcccgcatagc 666
             |||||| |||||||||||||| | | | |||||||   |||||||||| |||||||||||
Sbjct: 52963 acctctcccaatagacttgagttgtgatgcatataagattttggcattttcccgcatagc 52904

                         
Query: 667   aatatcaatctg 678
             ||||||||||||
Sbjct: 52903 aatatcaatctg 52892



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                             
Query: 166   ttctgcttcacgcttccctagcccaaatatattcctcagctcattcaa 213
             ||||||||||||||| || || ||||||||||||||||| | ||||||
Sbjct: 55360 ttctgcttcacgcttgcccagtccaaatatattcctcagttgattcaa 55313



 Score = 40.1 bits (20), Expect = 9.6
 Identities = 47/56 (83%)
 Strand = Plus / Minus

                                                                     
Query: 158   atgatcgcttctgcttcacgcttccctagcccaaatatattcctcagctcattcaa 213
             ||||| |||||||||||   |||| | || ||||||||||||||||| | ||||||
Sbjct: 39937 atgattgcttctgcttcgtacttcgccagtccaaatatattcctcagttgattcaa 39882



 Score = 40.1 bits (20), Expect = 9.6
 Identities = 44/52 (84%)
 Strand = Plus / Minus

                                                                 
Query: 240   gtccatctgaaagtacttctgttgtataggccgcatagagtatctttagatc 291
             |||||||||||||||| ||  ||| ||||||   |||||| |||||||||||
Sbjct: 39250 gtccatctgaaagtacctccattgcataggcactatagagcatctttagatc 39199
to top
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 63/69 (91%)
 Strand = Plus / Plus

                                                                            
Query: 542      acctcatcaaaaagtttatatgcaagttgtactctcctcacttcaatgagcgtgcctatg 601
                ||||||||| ||||||| |||||||||||| ||||||| ||||| || ||||||||||||
Sbjct: 18159895 acctcatcagaaagtttgtatgcaagttgtgctctccttacttcgataagcgtgcctatg 18159954

                         
Query: 602      tcaagacct 610
                |||||||||
Sbjct: 18159955 tcaagacct 18159963



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 58/64 (90%)
 Strand = Plus / Plus

                                                                            
Query: 479      aaagcagatgaaacgttttcttgaatcaacttcttcgcatgctccttgaacatgtcagca 538
                ||||| || |||| ||||||||||| ||||||||| ||||||||||||||||| ||||||
Sbjct: 18159591 aaagctgacgaaatgttttcttgaaccaacttctttgcatgctccttgaacatctcagca 18159650

                    
Query: 539      gcaa 542
                ||||
Sbjct: 18159651 gcaa 18159654



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 78/91 (85%)
 Strand = Plus / Plus

                                                                            
Query: 223      cttctcatcatcaaggcgtccatctgaaagtacttctgttgtataggccgcatagagtat 282
                |||||||||||| ||  |||||||||| ||||||||||||| |||||||  ||| |||| 
Sbjct: 18158977 cttctcatcatccagatgtccatctgatagtacttctgttgcataggccctatatagtag 18159036

                                               
Query: 283      ctttagatcaccaaccatcctatcatgatca 313
                ||| |||||| || || ||||||||||||||
Sbjct: 18159037 cttgagatcatcagccctcctatcatgatca 18159067



 Score = 73.8 bits (37), Expect = 7e-10
 Identities = 61/69 (88%)
 Strand = Plus / Plus

                                                                            
Query: 542      acctcatcaaaaagtttatatgcaagttgtactctcctcacttcaatgagcgtgcctatg 601
                ||||||||| ||||||||||||| ||||||  |||||| |||||||| |  |||||||||
Sbjct: 18174626 acctcatcagaaagtttatatgctagttgtgatctccttacttcaattaatgtgcctatg 18174685

                         
Query: 602      tcaagacct 610
                |||||||||
Sbjct: 18174686 tcaagacct 18174694



 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 63/72 (87%)
 Strand = Plus / Plus

                                                                            
Query: 607      acctcttccaatagacttgagctctaacgcatatagacttttggcattctcccgcatagc 666
                |||||| |||||||||||||| | | | |||||||   |||||||||| |||||||||||
Sbjct: 18160165 acctctcccaatagacttgagttgtgatgcatataagattttggcattttcccgcatagc 18160224

                            
Query: 667      aatatcaatctg 678
                ||||||||||||
Sbjct: 18160225 aatatcaatctg 18160236



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 43/48 (89%)
 Strand = Plus / Plus

                                                                
Query: 166      ttctgcttcacgcttccctagcccaaatatattcctcagctcattcaa 213
                ||||||||||||||| || || ||||||||||||||||| | ||||||
Sbjct: 18157768 ttctgcttcacgcttgcccagtccaaatatattcctcagttgattcaa 18157815



 Score = 40.1 bits (20), Expect = 9.6
 Identities = 44/52 (84%)
 Strand = Plus / Plus

                                                                    
Query: 240      gtccatctgaaagtacttctgttgtataggccgcatagagtatctttagatc 291
                |||||||||||||||| ||  ||| ||||||   |||||| |||||||||||
Sbjct: 18173878 gtccatctgaaagtacctccattgcataggcactatagagcatctttagatc 18173929



 Score = 40.1 bits (20), Expect = 9.6
 Identities = 47/56 (83%)
 Strand = Plus / Plus

                                                                        
Query: 158      atgatcgcttctgcttcacgcttccctagcccaaatatattcctcagctcattcaa 213
                ||||| |||||||||||   |||| | || ||||||||||||||||| | ||||||
Sbjct: 18173191 atgattgcttctgcttcgtacttcgccagtccaaatatattcctcagttgattcaa 18173246
to top
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 63/69 (91%)
 Strand = Plus / Plus

                                                                            
Query: 542      acctcatcaaaaagtttatatgcaagttgtactctcctcacttcaatgagcgtgcctatg 601
                ||||||||| ||||||| |||||||||||| ||||||| ||||| || ||||||||||||
Sbjct: 18169148 acctcatcagaaagtttgtatgcaagttgtgctctccttacttcgataagcgtgcctatg 18169207

                         
Query: 602      tcaagacct 610
                |||||||||
Sbjct: 18169208 tcaagacct 18169216



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 58/64 (90%)
 Strand = Plus / Plus

                                                                            
Query: 479      aaagcagatgaaacgttttcttgaatcaacttcttcgcatgctccttgaacatgtcagca 538
                ||||| || |||| ||||||||||| ||||||||| ||||||||||||||||| ||||||
Sbjct: 18168844 aaagctgacgaaatgttttcttgaaccaacttctttgcatgctccttgaacatctcagca 18168903

                    
Query: 539      gcaa 542
                ||||
Sbjct: 18168904 gcaa 18168907



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 78/91 (85%)
 Strand = Plus / Plus

                                                                            
Query: 223      cttctcatcatcaaggcgtccatctgaaagtacttctgttgtataggccgcatagagtat 282
                |||||||||||| ||  |||||||||| ||||||||||||| |||||||  ||| |||| 
Sbjct: 18168230 cttctcatcatccagatgtccatctgatagtacttctgttgcataggccctatatagtag 18168289

                                               
Query: 283      ctttagatcaccaaccatcctatcatgatca 313
                ||| |||||| || || ||||||||||||||
Sbjct: 18168290 cttgagatcatcagccctcctatcatgatca 18168320



 Score = 73.8 bits (37), Expect = 7e-10
 Identities = 61/69 (88%)
 Strand = Plus / Plus

                                                                            
Query: 542      acctcatcaaaaagtttatatgcaagttgtactctcctcacttcaatgagcgtgcctatg 601
                ||||||||| ||||||||||||| ||||||  |||||| |||||||| |  |||||||||
Sbjct: 18183879 acctcatcagaaagtttatatgctagttgtgatctccttacttcaattaatgtgcctatg 18183938

                         
Query: 602      tcaagacct 610
                |||||||||
Sbjct: 18183939 tcaagacct 18183947



 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 63/72 (87%)
 Strand = Plus / Plus

                                                                            
Query: 607      acctcttccaatagacttgagctctaacgcatatagacttttggcattctcccgcatagc 666
                |||||| |||||||||||||| | | | |||||||   |||||||||| |||||||||||
Sbjct: 18169418 acctctcccaatagacttgagttgtgatgcatataagattttggcattttcccgcatagc 18169477

                            
Query: 667      aatatcaatctg 678
                ||||||||||||
Sbjct: 18169478 aatatcaatctg 18169489



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 43/48 (89%)
 Strand = Plus / Plus

                                                                
Query: 166      ttctgcttcacgcttccctagcccaaatatattcctcagctcattcaa 213
                ||||||||||||||| || || ||||||||||||||||| | ||||||
Sbjct: 18167021 ttctgcttcacgcttgcccagtccaaatatattcctcagttgattcaa 18167068



 Score = 40.1 bits (20), Expect = 9.6
 Identities = 44/52 (84%)
 Strand = Plus / Plus

                                                                    
Query: 240      gtccatctgaaagtacttctgttgtataggccgcatagagtatctttagatc 291
                |||||||||||||||| ||  ||| ||||||   |||||| |||||||||||
Sbjct: 18183131 gtccatctgaaagtacctccattgcataggcactatagagcatctttagatc 18183182



 Score = 40.1 bits (20), Expect = 9.6
 Identities = 47/56 (83%)
 Strand = Plus / Plus

                                                                        
Query: 158      atgatcgcttctgcttcacgcttccctagcccaaatatattcctcagctcattcaa 213
                ||||| |||||||||||   |||| | || ||||||||||||||||| | ||||||
Sbjct: 18182444 atgattgcttctgcttcgtacttcgccagtccaaatatattcctcagttgattcaa 18182499
to top
>gb|DQ359158.1| Oryza sativa (japonica cultivar-group) chloroplast inner envelope
           protein mRNA, partial cds; nuclear gene for chloroplast
           product
          Length = 251

 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 108/134 (80%)
 Strand = Plus / Minus

                                                                       
Query: 158 atgatcgcttctgcttcacgcttccctagcccaaatatattcctcagctcattcaaggga 217
           ||||| |||||||||||   |||| | || ||||||||||||||||| | |||||| |  
Sbjct: 134 atgattgcttctgcttcgtacttcgccagtccaaatatattcctcagttgattcaaagcc 75

                                                                       
Query: 218 ccaagcttctcatcatcaaggcgtccatctgaaagtacttctgttgtataggccgcatag 277
            ||||||| ||||| | |||  |||||||||||||||| ||  ||| ||||||   ||||
Sbjct: 74  gcaagcttgtcatcgttaagatgtccatctgaaagtacctccattgcataggcactatag 15

                         
Query: 278 agtatctttagatc 291
           || |||||||||||
Sbjct: 14  agcatctttagatc 1
to top
>gb|AC123575.10| Medicago truncatula clone mth1-31p6, complete sequence
          Length = 83007

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                                
Query: 164   gcttctgcttcacgcttccctagcccaaatatatt 198
             ||||||||||||||||| || ||||||||||||||
Sbjct: 17653 gcttctgcttcacgcttacccagcccaaatatatt 17619
to top
>gb|AC143330.4| Mus musculus BAC clone RP23-263D5 from chromosome 6, complete sequence
          Length = 207749

 Score = 48.1 bits (24), Expect = 0.039
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                         
Query: 11    cattgttttctctctggttatttcctgc 38
             |||||||||||||||||||| |||||||
Sbjct: 94669 cattgttttctctctggttacttcctgc 94642
to top
>emb|Z68506.1|PSIEP110 P.sativum mRNA for 110 kD chloroplast inner envelope protein IEP110
          Length = 3267

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 164  gcttctgcttcacgcttccctagcccaaatatatt 198
            ||||||||||||||||| || || |||||||||||
Sbjct: 1395 gcttctgcttcacgcttacccagtccaaatatatt 1361
to top
>gb|U56419.1|PSU56419 Pisum sativum import intermediate associated protein 100 mRNA,
            nuclear gene encoding chloroplast protein, complete cds
          Length = 3282

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 164  gcttctgcttcacgcttccctagcccaaatatatt 198
            ||||||||||||||||| || || |||||||||||
Sbjct: 1365 gcttctgcttcacgcttacccagtccaaatatatt 1331
to top
>gb|AC124425.3| Mus musculus BAC clone RP24-230N16 from chromosome 5, complete sequence
          Length = 178931

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 515   gcatgctccttgaacatgtcag 536
             ||||||||||||||||||||||
Sbjct: 59030 gcatgctccttgaacatgtcag 59051
to top
>gb|AC097061.2| Homo sapiens chromosome 1 clone RP11-415L24, complete sequence
          Length = 165311

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 387    ttagcaacctattgaatgcaag 408
              ||||||||||||||||||||||
Sbjct: 158004 ttagcaacctattgaatgcaag 157983
to top
>gb|AC011225.7|AC011225 Homo sapiens chromosome 18, clone RP11-10L17, complete sequence
          Length = 148835

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 179   ttccctagcccaaatatattcctcag 204
             |||||||||||||||| |||||||||
Sbjct: 39273 ttccctagcccaaatacattcctcag 39298
to top
>gb|DQ481669.1| Takifugu rubripes HoxDb gene cluster, complete sequence
          Length = 398525

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 639    atagacttttggcattctccc 659
              |||||||||||||||||||||
Sbjct: 111614 atagacttttggcattctccc 111594
to top
>emb|BX469926.18| Zebrafish DNA sequence from clone DKEY-229E3 in linkage group 20,
             complete sequence
          Length = 242408

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 28    ttatttcctgcaacaaagaaa 48
             |||||||||||||||||||||
Sbjct: 52022 ttatttcctgcaacaaagaaa 52042
to top
>emb|AL954698.9| Zebrafish DNA sequence from clone CH211-233B16 in linkage group 6,
             complete sequence
          Length = 177161

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 108   agcatcatcatgctggtactt 128
             |||||||||||||||||||||
Sbjct: 91878 agcatcatcatgctggtactt 91898
to top
>dbj|AP006431.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT38F20, TM0328,
             complete sequence
          Length = 119346

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 23    tctggttatttcctgcaacaa 43
             |||||||||||||||||||||
Sbjct: 28277 tctggttatttcctgcaacaa 28297
to top
>dbj|AP006366.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT35C03, TM0176a,
             complete sequence
          Length = 119525

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 23    tctggttatttcctgcaacaa 43
             |||||||||||||||||||||
Sbjct: 80835 tctggttatttcctgcaacaa 80815
to top
>dbj|AP004926.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT13P22, TM0079c,
             complete sequence
          Length = 109022

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 23    tctggttatttcctgcaacaa 43
             |||||||||||||||||||||
Sbjct: 41126 tctggttatttcctgcaacaa 41106
to top
>gb|AC138093.7| Mus musculus chromosome 16, clone RP24-559J21, complete sequence
          Length = 123569

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 332   ataggtccaagcccacgtgcaaat 355
             |||||| |||||||||||||||||
Sbjct: 15763 ataggtacaagcccacgtgcaaat 15740
to top
>emb|BX908387.8| Zebrafish DNA sequence from clone DKEY-45B6 in linkage group 3, complete
              sequence
          Length = 212624

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 45     gaaaacagttttcctgaacaaata 68
              |||||||||||| |||||||||||
Sbjct: 111976 gaaaacagttttactgaacaaata 111953
to top
>gb|AC125355.4| Mus musculus BAC clone RP23-183C14 from 12, complete sequence
          Length = 180423

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 74    acagctttttactgtgtagc 93
             ||||||||||||||||||||
Sbjct: 45914 acagctttttactgtgtagc 45895
to top
>ref|XM_663134.1| Cryptosporidium hominis TU502 hypothetical protein (Chro.70397)
            partial mRNA
          Length = 1875

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 370  aaacttgcttagaactgtta 389
            ||||||||||||||||||||
Sbjct: 1784 aaacttgcttagaactgtta 1803
to top
>emb|AL590416.4| Human DNA sequence from clone RP11-89C21 on chromosome 10p13-14
             Contains the 3' end of the gene for a protein related to
             the N terminus of tre (RNTRE) (KIAA0019), gene FLJ34168, a
             novel gene and a CpG island, complete sequence
          Length = 171026

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 42    aaagaaaacagttttcctgaacaaatag 69
             |||||||| |||||||||||| ||||||
Sbjct: 88544 aaagaaaaaagttttcctgaagaaatag 88517
to top
>emb|AL645908.9| Mouse DNA sequence from clone RP23-24A24 on chromosome 11, complete
             sequence
          Length = 208214

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 300   tcctatcatgatcaaaatct 319
             ||||||||||||||||||||
Sbjct: 13843 tcctatcatgatcaaaatct 13862
to top
>emb|BX957309.6| Zebrafish DNA sequence from clone CH211-113P19 in linkage group 13,
            complete sequence
          Length = 169630

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 49   acagttttcctgaacaaata 68
            ||||||||||||||||||||
Sbjct: 2819 acagttttcctgaacaaata 2838
to top
>dbj|BA000038.2| Vibrio vulnificus YJ016 DNA, chromosome II, complete sequence
          Length = 1857073

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 163    cgcttctgcttcacgcttcc 182
              ||||||||||||||||||||
Sbjct: 866056 cgcttctgcttcacgcttcc 866037
to top
>gb|AC122721.2| Homo sapiens chromosome 5 clone RP11-91I13, complete sequence
          Length = 137867

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 656   tcccgcatagcaatatcaatctga 679
             ||||||||||||| ||||||||||
Sbjct: 90498 tcccgcatagcaacatcaatctga 90521
to top
>gb|AC093521.3| Homo sapiens chromosome 5 clone RP11-152P24, complete sequence
          Length = 143970

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 41   caaagaaaacagttttcctg 60
            ||||||||||||||||||||
Sbjct: 7513 caaagaaaacagttttcctg 7532
to top
>gb|AC026392.7| Homo sapiens chromosome 10 clone RP11-238C10, complete sequence
          Length = 177829

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 42     aaagaaaacagttttcctgaacaaatag 69
              |||||||| |||||||||||| ||||||
Sbjct: 171676 aaagaaaaaagttttcctgaagaaatag 171649
to top
>dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete genome
          Length = 2696255

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 529    catgtcagcagcaacctcat 548
              ||||||||||||||||||||
Sbjct: 144969 catgtcagcagcaacctcat 144988
to top
>emb|BX569789.4| Zebrafish DNA sequence from clone DKEY-68O6 in linkage group 3,
             complete sequence
          Length = 244662

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 45    gaaaacagttttcctgaacaaata 68
             |||||||||||| |||||||||||
Sbjct: 76558 gaaaacagttttactgaacaaata 76581
to top
>gb|AC160646.2| Gallus gallus BAC clone CH261-24P2 from chromosome unknown, complete
              sequence
          Length = 212960

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 520    ctccttgaacatgtcagcag 539
              ||||||||||||||||||||
Sbjct: 138936 ctccttgaacatgtcagcag 138917
to top
>ref|XM_628518.1| Cryptosporidium parvum Iowa II hypothetical protein (cgd7_3570),
            partial mRNA
          Length = 1875

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 370  aaacttgcttagaactgtta 389
            ||||||||||||||||||||
Sbjct: 1784 aaacttgcttagaactgtta 1803
to top
>gb|AC010596.8| Homo sapiens chromosome 5 clone CTC-483B24, complete sequence
          Length = 165193

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 656  tcccgcatagcaatatcaatctga 679
            ||||||||||||| ||||||||||
Sbjct: 6604 tcccgcatagcaacatcaatctga 6627
to top
>gb|AC133652.6| Mus musculus BAC clone RP24-283H8 from chromosome 16, complete sequence
          Length = 177172

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 332   ataggtccaagcccacgtgcaaat 355
             |||||| |||||||||||||||||
Sbjct: 76326 ataggtacaagcccacgtgcaaat 76303
to top
>gb|AC160399.6| Mus musculus 6 BAC RP23-218B15 (Roswell Park Cancer Institute
            (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 196625

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 543  cctcatcaaaaagtttatatgcaa 566
            ||||||||||||| ||||||||||
Sbjct: 9466 cctcatcaaaaagattatatgcaa 9489
to top
>gb|AC016738.6| Homo sapiens BAC clone RP11-426K3 from 2, complete sequence
          Length = 183289

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 200   ctcagctcattcaagggacc 219
             ||||||||||||||||||||
Sbjct: 36824 ctcagctcattcaagggacc 36843
to top
>gb|AC084652.1|CBRG45O11 Caenorhabditis briggsae cosmid G45O11, complete sequence
          Length = 26703

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 395 ctattgaatgcaaggatact 414
           ||||||||||||||||||||
Sbjct: 705 ctattgaatgcaaggatact 686
to top
>gb|AC099627.10| Mus musculus chromosome 7, clone RP24-69E5, complete sequence
          Length = 244051

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 16    ttttctctctggttatttcc 35
             ||||||||||||||||||||
Sbjct: 47540 ttttctctctggttatttcc 47559
to top
>gb|AC133086.4| Mus musculus BAC clone RP24-110I11 from 6, complete sequence
          Length = 212696

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 543   cctcatcaaaaagtttatatgcaa 566
             ||||||||||||| ||||||||||
Sbjct: 61270 cctcatcaaaaagattatatgcaa 61247
to top
>gb|AE016796.1| Vibrio vulnificus CMCP6 chromosome II, complete sequence
          Length = 1844853

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 163    cgcttctgcttcacgcttcc 182
              ||||||||||||||||||||
Sbjct: 290216 cgcttctgcttcacgcttcc 290197
to top
>gb|M96929.1|SYOCO2CMP Synechococcus sp. carbon dioxide concentrating mechanism protein
            (ccmK, ccmL and ccmM) genes, complete cds
          Length = 3557

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 529  catgtcagcagcaacctcat 548
            ||||||||||||||||||||
Sbjct: 1162 catgtcagcagcaacctcat 1143
to top
>gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome
          Length = 2695903

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 529     catgtcagcagcaacctcat 548
               ||||||||||||||||||||
Sbjct: 1475831 catgtcagcagcaacctcat 1475812


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,399,095
Number of Sequences: 3902068
Number of extensions: 6399095
Number of successful extensions: 114837
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 114610
Number of HSP's gapped (non-prelim): 227
length of query: 701
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 678
effective length of database: 17,143,297,704
effective search space: 11623155843312
effective search space used: 11623155843312
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top