ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd14e08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1HSP83_ORYSA (Q07078) Heat shock protein 81-3 (HSP81-3) (Gravity-... 30 2.2
2HSP81_ORYSA (P33126) Heat shock protein 81-1 (HSP81-1) (Heat sho... 30 2.2
3SYI_THEFY (Q47QV9) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isole... 28 8.4
4RFCS_SULAC (Q4JAB0) Replication factor C small subunit (RFC smal... 28 8.4

>HSP83_ORYSA (Q07078) Heat shock protein 81-3 (HSP81-3) (Gravity-specific|
           protein GSC 381)
          Length = 699

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 13/16 (81%), Positives = 13/16 (81%)
 Frame = -1

Query: 224 PPLXDXAGESKMEXVD 177
           PPL D AGESKME VD
Sbjct: 684 PPLEDDAGESKMEEVD 699



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>HSP81_ORYSA (P33126) Heat shock protein 81-1 (HSP81-1) (Heat shock protein 82)|
          Length = 699

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 13/16 (81%), Positives = 13/16 (81%)
 Frame = -1

Query: 224 PPLXDXAGESKMEXVD 177
           PPL D AGESKME VD
Sbjct: 684 PPLEDDAGESKMEEVD 699



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>SYI_THEFY (Q47QV9) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase) (IleRS)
          Length = 1060

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 140 PAPSSCFYLSVVVGWFWHVLAVSVLSFG 57
           PA   C  +    GWF+ ++AVS L FG
Sbjct: 561 PAQYICEAIDQTRGWFYSLMAVSTLVFG 588



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>RFCS_SULAC (Q4JAB0) Replication factor C small subunit (RFC small subunit)|
           (Clamp loader small subunit)
          Length = 325

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +3

Query: 159 AQPWRLVDLLHLALTGXILQGR 224
           AQP  + ++LHLAL+G  LQ R
Sbjct: 225 AQPKEIREMLHLALSGKFLQAR 246


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,214,114
Number of Sequences: 219361
Number of extensions: 432932
Number of successful extensions: 965
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 965
length of database: 80,573,946
effective HSP length: 50
effective length of database: 69,605,896
effective search space used: 1670541504
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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