| Clone Name | rbasd14e08 |
|---|---|
| Clone Library Name | barley_pub |
| No. | Definition | Score (bits) |
E Value |
1 | HSP83_ORYSA (Q07078) Heat shock protein 81-3 (HSP81-3) (Gravity-... | 30 | 2.2 | 2 | HSP81_ORYSA (P33126) Heat shock protein 81-1 (HSP81-1) (Heat sho... | 30 | 2.2 | 3 | SYI_THEFY (Q47QV9) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isole... | 28 | 8.4 | 4 | RFCS_SULAC (Q4JAB0) Replication factor C small subunit (RFC smal... | 28 | 8.4 |
|---|
>HSP83_ORYSA (Q07078) Heat shock protein 81-3 (HSP81-3) (Gravity-specific| protein GSC 381) Length = 699 Score = 29.6 bits (65), Expect = 2.2 Identities = 13/16 (81%), Positives = 13/16 (81%) Frame = -1 Query: 224 PPLXDXAGESKMEXVD 177 PPL D AGESKME VD Sbjct: 684 PPLEDDAGESKMEEVD 699
>HSP81_ORYSA (P33126) Heat shock protein 81-1 (HSP81-1) (Heat shock protein 82)| Length = 699 Score = 29.6 bits (65), Expect = 2.2 Identities = 13/16 (81%), Positives = 13/16 (81%) Frame = -1 Query: 224 PPLXDXAGESKMEXVD 177 PPL D AGESKME VD Sbjct: 684 PPLEDDAGESKMEEVD 699
>SYI_THEFY (Q47QV9) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA| ligase) (IleRS) Length = 1060 Score = 27.7 bits (60), Expect = 8.4 Identities = 12/28 (42%), Positives = 16/28 (57%) Frame = -1 Query: 140 PAPSSCFYLSVVVGWFWHVLAVSVLSFG 57 PA C + GWF+ ++AVS L FG Sbjct: 561 PAQYICEAIDQTRGWFYSLMAVSTLVFG 588
>RFCS_SULAC (Q4JAB0) Replication factor C small subunit (RFC small subunit)| (Clamp loader small subunit) Length = 325 Score = 27.7 bits (60), Expect = 8.4 Identities = 12/22 (54%), Positives = 16/22 (72%) Frame = +3 Query: 159 AQPWRLVDLLHLALTGXILQGR 224 AQP + ++LHLAL+G LQ R Sbjct: 225 AQPKEIREMLHLALSGKFLQAR 246 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 28,214,114 Number of Sequences: 219361 Number of extensions: 432932 Number of successful extensions: 965 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 949 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 965 length of database: 80,573,946 effective HSP length: 50 effective length of database: 69,605,896 effective search space used: 1670541504 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)