>Y818_SYNY3 (P74038) Hypothetical UPF0011 protein sll0818|
          Length = 279

 Score = 89.0 bits (219), Expect = 1e-17
 Identities = 50/125 (40%), Positives = 68/125 (54%)
 Frame = -2

Query: 620 REAVTQIFYVPPHGIQQFLVDAASSFGDSRSCVIAREITKLHEEFWRGTLGEANEAFATR 441
           +E  T I Y  PH +   L D  +  G  RS  +ARE+TK HE+FWRGTL  A   F   
Sbjct: 151 QEERTIILYEAPHRLLATLTDLQTFLGQERSLTVARELTKYHEQFWRGTLQTAIAYFTEN 210

Query: 440 QPKGEITILIDGNSISIVEKPSDDFLEHELRELMAKGHALSTAVKLVAEATSAKKKDVYA 261
            PKGE  ++I G +       S++ L  ELR LMAKG   S A + +AE T   ++ +Y 
Sbjct: 211 TPKGEFCLVIAGATPEDRPSFSEENLRDELRSLMAKGLTRSQASRQLAEETKLPRRQLYQ 270

Query: 260 LALRV 246
           L+L +
Sbjct: 271 LSLEL 275

>Y552_XYLFA (Q9PFV5) Hypothetical UPF0011 protein Xf0552|
          Length = 273

 Score = 61.2 bits (147), Expect = 2e-09
 Identities = 42/120 (35%), Positives = 59/120 (49%), Gaps = 2/120 (1%)
 Frame = -2

Query: 617 EAVTQIFYVPPHGIQQFLVDAASSFGDSRSCVIAREITKLHEEFWRGTLGEANEAFAT-- 444
           E  T IFY   H I + L D A+ FG  R+ V+ARE+TK+ E    GTL       A   
Sbjct: 155 EPRTLIFYEASHRIAECLTDLATIFGSMRAAVVARELTKIFETVLDGTLATLQTQVANDD 214

Query: 443 RQPKGEITILIDGNSISIVEKPSDDFLEHELRELMAKGHALSTAVKLVAEATSAKKKDVY 264
            Q KGE  I++ G +     K ++      +  L+ +    S+A KL AE T A +K +Y
Sbjct: 215 NQRKGEFVIIVQGAADQDAAKITEG---RRVYALLKEHLPPSSAAKLAAEITGAPRKALY 271

>Y1588_XYLFT (Q87B70) Hypothetical UPF0011 protein PD1588|
          Length = 273

 Score = 60.5 bits (145), Expect = 4e-09
 Identities = 42/120 (35%), Positives = 58/120 (48%), Gaps = 2/120 (1%)
 Frame = -2

Query: 617 EAVTQIFYVPPHGIQQFLVDAASSFGDSRSCVIAREITKLHEEFWRGTLGEANEAFAT-- 444
           E  T IFY   H I + L D A+ FG  R  V+ARE+TK+ E    GTL       A   
Sbjct: 155 EPRTLIFYEASHRIAECLTDLATIFGSMRIAVVARELTKIFETVLDGTLATLQTQVANDE 214

Query: 443 RQPKGEITILIDGNSISIVEKPSDDFLEHELRELMAKGHALSTAVKLVAEATSAKKKDVY 264
            Q KGE  I++ G +     K ++      +  L+ +    S+A KL AE T A +K +Y
Sbjct: 215 NQRKGEFVIIVQGAADQDAAKITEG---RRIYALLKEHLPPSSAAKLAAEITGAPRKALY 271

>Y456_STRP8 (Q8P2A6) Hypothetical UPF0011 protein spyM18_0456|
          Length = 287

 Score = 59.7 bits (143), Expect = 7e-09
 Identities = 36/116 (31%), Positives = 64/116 (55%), Gaps = 1/116 (0%)
 Frame = -2

Query: 608 TQIFYVPPHGIQQFLVDAASSFGDSRSCVIAREITKLHEEFWRGTLGEANEAFATRQPKG 429
           TQ+FY  P+ I+  L +  + +GD R  V+ RE+TKL EE+ RG++ E          KG
Sbjct: 167 TQMFYESPYRIKDTLTNMLACYGD-RQVVLVRELTKLFEEYQRGSISEILSYLEETSLKG 225

Query: 428 EITILIDGNSI-SIVEKPSDDFLEHELRELMAKGHALSTAVKLVAEATSAKKKDVY 264
           E  +++ G  + S VE  +D  L   +++ +  G   + A+K +A+A    ++++Y
Sbjct: 226 ECLLIVAGAQVDSEVELTADVDLVSLVQKEIQAGAKPNQAIKTIAKAYQVNRQELY 281

>Y292_STRP3 (Q8K8H1) Hypothetical UPF0011 protein SpyM3_0292/SPs1565|
          Length = 287

 Score = 59.7 bits (143), Expect = 7e-09
 Identities = 36/116 (31%), Positives = 64/116 (55%), Gaps = 1/116 (0%)
 Frame = -2

Query: 608 TQIFYVPPHGIQQFLVDAASSFGDSRSCVIAREITKLHEEFWRGTLGEANEAFATRQPKG 429
           TQ+FY  P+ I+  L +  + +GD R  V+ RE+TKL EE+ RG++ E          KG
Sbjct: 167 TQMFYESPYRIKDTLTNMLACYGD-RQVVLVRELTKLFEEYQRGSISEILSYLEETSLKG 225

Query: 428 EITILIDGNSI-SIVEKPSDDFLEHELRELMAKGHALSTAVKLVAEATSAKKKDVY 264
           E  +++ G  + S VE  +D  L   +++ +  G   + A+K +A+A    ++++Y
Sbjct: 226 ECLLIVAGAQVDSEVELTADVDLVSLVQKEIQAGAKPNQAIKTIAKAYQVNRQELY 281

>Y049_BACHD (Q9KGL2) Hypothetical UPF0011 protein BH0049|
          Length = 289

 Score = 58.2 bits (139), Expect = 2e-08
 Identities = 40/120 (33%), Positives = 58/120 (48%), Gaps = 5/120 (4%)
 Frame = -2

Query: 608 TQIFYVPPHGIQQFLVDAASSFGDSRSCVIAREITKLHEEFWRGTLGEANEAFATRQPKG 429
           T IFY  PH ++  L D     G+ R   I RE+TK +EEF RGTL EA         KG
Sbjct: 167 TLIFYESPHRLKDTLDDMLLILGN-RHVSICRELTKTYEEFLRGTLEEAVHWAREATIKG 225

Query: 428 EITILIDGNSISIVEKPSDDFLE-----HELRELMAKGHALSTAVKLVAEATSAKKKDVY 264
           E  ++++GN   +  +P + + E       +   +A G     A+K VA      K+D+Y
Sbjct: 226 EFCLIVEGNGEKV--EPEEVWWESLSPVQHVEHYIALGFRSKEAIKQVATDRGVPKRDIY 283

>Y406_STRP1 (Q9A186) Hypothetical UPF0011 protein SPy0406/M5005_Spy0335|
          Length = 287

 Score = 58.2 bits (139), Expect = 2e-08
 Identities = 36/116 (31%), Positives = 64/116 (55%), Gaps = 1/116 (0%)
 Frame = -2

Query: 608 TQIFYVPPHGIQQFLVDAASSFGDSRSCVIAREITKLHEEFWRGTLGEANEAFATRQPKG 429
           TQ+FY  P+ I+  L +  + +GD R  V+ RE+TKL EE+ RG++ E          KG
Sbjct: 167 TQMFYESPYRIKDTLTNMLACYGD-RQVVLVRELTKLFEEYQRGSISEILSYLEETPLKG 225

Query: 428 EITILIDG-NSISIVEKPSDDFLEHELRELMAKGHALSTAVKLVAEATSAKKKDVY 264
           E  +++ G  + S VE  +D  L   +++ +  G   + A+K +A+A    ++++Y
Sbjct: 226 ECLLIVAGAQADSEVELTADVDLVSLVQKEIQAGAKPNQAIKTIAKAYQVNRQELY 281

>YABC_BACSU (P37544) Hypothetical UPF0011 protein yabC|
          Length = 292

 Score = 55.5 bits (132), Expect = 1e-07
 Identities = 35/119 (29%), Positives = 60/119 (50%), Gaps = 4/119 (3%)
 Frame = -2

Query: 608 TQIFYVPPHGIQQFLVDAASSFGDSRSCVIAREITKLHEEFWRGTLGEANEAFATRQPKG 429
           T IFY  PH +++ L   A   GD R   + RE+TK +EEF RGT+ E        Q +G
Sbjct: 168 TIIFYEAPHRLKETLSAMAEILGD-REIAVTRELTKKYEEFIRGTISEVIGWANEDQIRG 226

Query: 428 EITILIDGNSISIVEKPSDDF----LEHELRELMAKGHALSTAVKLVAEATSAKKKDVY 264
           E  ++++G++   V++    +     +  +   ++KG     A+K  A   +  K++VY
Sbjct: 227 EFCLVVEGSNNEEVDEEEQWWETLTAKEHVEHYISKGATSKEAIKKAAVDRNVPKREVY 285

>Y709_THEMA (Q9WZG8) Hypothetical UPF0011 protein TM0709|
          Length = 222

 Score = 55.5 bits (132), Expect = 1e-07
 Identities = 28/66 (42%), Positives = 40/66 (60%)
 Frame = -2

Query: 602 IFYVPPHGIQQFLVDAASSFGDSRSCVIAREITKLHEEFWRGTLGEANEAFATRQPKGEI 423
           +F+  P  +   L D     GD R   IARE+TKLH+EF+RG + EA   F  ++P GEI
Sbjct: 156 VFFESPERLLSTLRDILEIIGD-REVFIAREMTKLHQEFFRGKVSEAISHFEKKKPLGEI 214

Query: 422 TILIDG 405
           T+++ G
Sbjct: 215 TVVLSG 220

>Y361_STRP6 (Q5XDL7) Hypothetical UPF0011 protein M6_Spy0361|
          Length = 287

 Score = 55.5 bits (132), Expect = 1e-07
 Identities = 34/116 (29%), Positives = 63/116 (54%), Gaps = 1/116 (0%)
 Frame = -2

Query: 608 TQIFYVPPHGIQQFLVDAASSFGDSRSCVIAREITKLHEEFWRGTLGEANEAFATRQPKG 429
           TQ+F   P+ I+  L +  + +GD R  V+ RE+TKL EE+ RG++ E          KG
Sbjct: 167 TQMFCESPYRIKDTLTNMLACYGD-RQVVLVRELTKLFEEYQRGSISEILSYLEETPLKG 225

Query: 428 EITILIDGNSI-SIVEKPSDDFLEHELRELMAKGHALSTAVKLVAEATSAKKKDVY 264
           E  +++ G  + S +E  +D  L   +++ +  G   + A+K +A+A    ++++Y
Sbjct: 226 ECLLIVAGAQVDSEIELTADVDLVSLVQKEIQAGAKPNQAIKTIAKAYQVNRQELY 281

>Y4422_PSEAE (Q9HVZ3) Hypothetical UPF0011 protein PA4422|
          Length = 282

 Score = 50.8 bits (120), Expect = 3e-06
 Identities = 42/129 (32%), Positives = 59/129 (45%), Gaps = 2/129 (1%)
 Frame = -2

Query: 617 EAVTQIFYVPPHGIQQFLVDAASSFGDSRSCVIAREITKLHEEFWRGTLGEANE--AFAT 444
           E  T IFY  PH + + L D    FG  R  V+ARE++K  E      L E ++  A  +
Sbjct: 154 EPRTLIFYEAPHRLLESLADMRDVFGGERRAVLARELSKTFETIRSLPLAELHDWVASDS 213

Query: 443 RQPKGEITILIDGNSISIVEKPSDDFLEHELRELMAKGHALSTAVKLVAEATSAKKKDVY 264
            Q +GE  +L+ G      E+         L  L+A+   L  A  L AE T  +K  +Y
Sbjct: 214 NQQRGECVVLVAGWQAPEGEESIGAEALRVLDLLLAE-LPLKKAAALAAEITGVRKNLLY 272

Query: 263 ALALRVFGK 237
             AL+  GK
Sbjct: 273 QQALQRQGK 281

>Y645_PASMU (Q9CN04) Hypothetical UPF0011 protein PM0645|
          Length = 281

 Score = 49.7 bits (117), Expect = 7e-06
 Identities = 39/129 (30%), Positives = 58/129 (44%), Gaps = 4/129 (3%)
 Frame = -2

Query: 617 EAVTQIFYVPPHGIQQFLVDAASSFGDSRSCVIAREITKLHEEFWRGTLGEANEAFA--T 444
           E  T IFY   H I   L D   + G  R  V+AREITK  E      +    +      
Sbjct: 156 EERTLIFYESTHRILDTLADIEKTLGAERYVVLAREITKTWETIVGDNVANLRQWLGEDP 215

Query: 443 RQPKGEITILIDGNSISIVEKPSDDFLEHELR--ELMAKGHALSTAVKLVAEATSAKKKD 270
            + KGE+ ++I+G     V++ +D+     L+  EL+++   L  A  +VAE    KK  
Sbjct: 216 NRTKGEMVLIIEGK----VKQETDEINPQALKALELISQSLPLKKAAAIVAEIYGYKKNA 271

Query: 269 VYALALRVF 243
           +Y   L  F
Sbjct: 272 LYQYGLEHF 280

>YFM4_MICOL (Q08329) Hypothetical UPF0011 protein in fmrO 3'region (ORF-4)|
           (Fragment)
          Length = 313

 Score = 49.3 bits (116), Expect = 9e-06
 Identities = 37/117 (31%), Positives = 57/117 (48%), Gaps = 2/117 (1%)
 Frame = -2

Query: 608 TQIFYVPPHGIQQFLVDAASSFGDSRSCVIAREITKLHEEFWRGTLGEANEAFATRQ-PK 432
           T IF+  PH I   L D A+  GD R   +AR +TK  EEF RG L E        Q  +
Sbjct: 184 TLIFFEAPHRIVAMLADLAAVLGD-RPAALARNLTKDDEEFLRGRLNELTARLRVEQVVR 242

Query: 431 GEITILIDGNSISIVEKPSDDFLEHELRELMAKGHALSTAVK-LVAEATSAKKKDVY 264
           G+ T+++ G+  +  ++  D  L   L E + +  A +  ++ +V E T   +  VY
Sbjct: 243 GQFTVVVAGSPEAHADE--DRALAARLTETLVRHGAEARLIREVVREVTGLPRNWVY 297

>YRAL_ECOLI (P67087) Hypothetical UPF0011 protein yraL|
          Length = 286

 Score = 49.3 bits (116), Expect = 9e-06
 Identities = 39/128 (30%), Positives = 56/128 (43%), Gaps = 2/128 (1%)
 Frame = -2

Query: 617 EAVTQIFYVPPHGIQQFLVDAASSFGDSRSCVIAREITKLHEEFWRGTLGE--ANEAFAT 444
           E  T IFY   H +   L D  +  G+SR  V+ARE+TK  E      +GE  A      
Sbjct: 162 EPRTLIFYESTHRLLDSLEDIVAVLGESRYVVLARELTKTWETIHGAPVGELLAWVKEDE 221

Query: 443 RQPKGEITILIDGNSISIVEKPSDDFLEHELRELMAKGHALSTAVKLVAEATSAKKKDVY 264
            + KGE+ ++++G+     + P+D         L+     L  A  L AE    KK  +Y
Sbjct: 222 NRRKGEMVLIVEGHKAQEEDLPADAL---RTLALLQAELPLKKAAALAAEIHGVKKNALY 278

Query: 263 ALALRVFG 240
             AL   G
Sbjct: 279 KYALEQQG 286

>YRAL_ECO57 (P67088) Hypothetical UPF0011 protein yraL|
          Length = 286

 Score = 49.3 bits (116), Expect = 9e-06
 Identities = 39/128 (30%), Positives = 56/128 (43%), Gaps = 2/128 (1%)
 Frame = -2

Query: 617 EAVTQIFYVPPHGIQQFLVDAASSFGDSRSCVIAREITKLHEEFWRGTLGE--ANEAFAT 444
           E  T IFY   H +   L D  +  G+SR  V+ARE+TK  E      +GE  A      
Sbjct: 162 EPRTLIFYESTHRLLDSLEDIVAVLGESRYVVLARELTKTWETIHGAPVGELLAWVKEDE 221

Query: 443 RQPKGEITILIDGNSISIVEKPSDDFLEHELRELMAKGHALSTAVKLVAEATSAKKKDVY 264
            + KGE+ ++++G+     + P+D         L+     L  A  L AE    KK  +Y
Sbjct: 222 NRRKGEMVLIVEGHKAQEEDLPADAL---RTLALLQAELPLKKAAALAAEIHGVKKNALY 278

Query: 263 ALALRVFG 240
             AL   G
Sbjct: 279 KYALEQQG 286

>Y342_NEIMA (Q9JWJ7) Hypothetical UPF0011 protein NMA0342|
          Length = 291

 Score = 48.9 bits (115), Expect = 1e-05
 Identities = 39/125 (31%), Positives = 58/125 (46%), Gaps = 2/125 (1%)
 Frame = -2

Query: 620 REAVTQIFYVPPHGIQQFLVDAASSFGDSRSCVIAREITKLHEEFWRGTLGEANEAFAT- 444
           R A   + +  PH I   L D A  F + R  ++AREITK  E F  GT+GE   A A  
Sbjct: 165 RVAFPVVMFETPHRIGATLADMAELFPERR-LMLAREITKTFETFLSGTVGEIQTALAAD 223

Query: 443 -RQPKGEITILIDGNSISIVEKPSDDFLEHELRELMAKGHALSTAVKLVAEATSAKKKDV 267
             Q +GE+ +++        E  S+      + +++        A +L A+ T   KK +
Sbjct: 224 GNQSRGEMVLVLYPAQDEKHEGLSES--AQNIMKILTAELPTKQAAELAAKITGEGKKAL 281

Query: 266 YALAL 252
           Y LAL
Sbjct: 282 YDLAL 286

>Y582_VIBCH (Q9KUD9) Hypothetical UPF0011 protein VC0582|
          Length = 288

 Score = 48.9 bits (115), Expect = 1e-05
 Identities = 40/126 (31%), Positives = 55/126 (43%), Gaps = 2/126 (1%)
 Frame = -2

Query: 608 TQIFYVPPHGIQQFLVDAASSFGDSRSCVIAREITKLHEEFWRGTLGEANEAFA--TRQP 435
           T IFY  PH I + L D     G  R  V+ARE+TK  E      L E     A    + 
Sbjct: 165 TCIFYESPHRICESLQDMLDVLGGEREVVLARELTKTFETIQGMPLAELITWIAEDDNRK 224

Query: 434 KGEITILIDGNSISIVEKPSDDFLEHELRELMAKGHALSTAVKLVAEATSAKKKDVYALA 255
           KGE+ +L+ G   +  ++  D+ L      ++ K   L  A  LVAE    KK  +Y   
Sbjct: 225 KGEMVLLVHGYRDAGEQQLPDEAL--RTLTILTKELPLKKAAALVAEIHQLKKNALYKWG 282

Query: 254 LRVFGK 237
           L   G+
Sbjct: 283 LENLGE 288

>Y2088_NEIMB (Q9JXE3) Hypothetical UPF0011 protein NMB2088|
          Length = 291

 Score = 47.8 bits (112), Expect = 3e-05
 Identities = 38/125 (30%), Positives = 58/125 (46%), Gaps = 2/125 (1%)
 Frame = -2

Query: 620 REAVTQIFYVPPHGIQQFLVDAASSFGDSRSCVIAREITKLHEEFWRGTLGEANEAFAT- 444
           R A   + +  PH I   L D A  F + R  ++AREITK  E F  GT+GE   A +  
Sbjct: 165 RAAFPIVMFETPHRIGATLADMAELFPERR-LMLAREITKTFETFLSGTVGEIQTALSAD 223

Query: 443 -RQPKGEITILIDGNSISIVEKPSDDFLEHELRELMAKGHALSTAVKLVAEATSAKKKDV 267
             Q +GE+ +++        E  S+      + +++        A +L A+ T   KK +
Sbjct: 224 GNQSRGEMVLVLYPAQDEKHEGLSES--AQNIMKILTAELPTKQAAELAAKITGEGKKAL 281

Query: 266 YALAL 252
           Y LAL
Sbjct: 282 YDLAL 286

>Y056_MYCGE (P47302) Hypothetical UPF0011 protein MG056|
          Length = 277

 Score = 47.0 bits (110), Expect = 5e-05
 Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 1/118 (0%)
 Frame = -2

Query: 608 TQIFYVPPHGIQQFLVDAASSFGDSRSCVIAREITKLHE-EFWRGTLGEANEAFATRQPK 432
           T +F+   H ++  L    + F ++    I RE+TKLHE  +W  T   +         K
Sbjct: 159 TIVFFEAVHRLENTLETVKNVFKNN-DVFIGRELTKLHESHYWFNT---SENTLPDITLK 214

Query: 431 GEITILIDGNSISIVEKPSDDFLEHELRELMAKGHALSTAVKLVAEATSAKKKDVYAL 258
           GE  I+ID  +I+     S+ +L +E+++LM  G  L  A   +A+    K   +Y L
Sbjct: 215 GEFVIVIDNQNINHQTLSSNQYLVYEIKKLMDIGVKLKDACNYLAKKMHLKSSMLYTL 272

>Y1654_HAEIN (P45298) Hypothetical UPF0011 protein HI1654|
          Length = 283

 Score = 47.0 bits (110), Expect = 5e-05
 Identities = 37/123 (30%), Positives = 56/123 (45%), Gaps = 4/123 (3%)
 Frame = -2

Query: 608 TQIFYVPPHGIQQFLVDAASSFGDSRSCVIAREITKLHEEFWRGTLGEANEAFA--TRQP 435
           T IFY   H I   L D  +  G+ R  V+ARE+TK  E     T+    E       + 
Sbjct: 159 TLIFYESTHRILDTLEDMQAVLGEERYIVLAREMTKTWETITGNTIKNLREWLLEDPNRT 218

Query: 434 KGEITILIDGNSISIVEKPSDDFLEHELR--ELMAKGHALSTAVKLVAEATSAKKKDVYA 261
           KGE+ ++++G   S     +D+     ++  EL+A+   L  A  +VAE    KK  +Y 
Sbjct: 219 KGEMVLIVEGKPKS---DNNDEISPQAVKALELIAEELPLKKAAAIVAELYGYKKNALYQ 275

Query: 260 LAL 252
             L
Sbjct: 276 FGL 278

>Y1030_MYCBO (P0A641) Hypothetical UPF0011 protein Mb1030|
          Length = 285

 Score = 47.0 bits (110), Expect = 5e-05
 Identities = 27/71 (38%), Positives = 38/71 (53%)
 Frame = -2

Query: 617 EAVTQIFYVPPHGIQQFLVDAASSFGDSRSCVIAREITKLHEEFWRGTLGEANEAFATRQ 438
           E  T +F+  P  +   L DA    G +R   I RE+TK+HEE  RG+L E    +A   
Sbjct: 156 ERRTCVFFESPRRLAACLNDAVEQLGGARPAAICRELTKVHEEVVRGSLDEL-AIWAAGG 214

Query: 437 PKGEITILIDG 405
             GEIT+++ G
Sbjct: 215 VLGEITVVVAG 225

>Y1003_MYCTU (P0A640) Hypothetical UPF0011 protein Rv1003/MT1032|
          Length = 285

 Score = 47.0 bits (110), Expect = 5e-05
 Identities = 27/71 (38%), Positives = 38/71 (53%)
 Frame = -2

Query: 617 EAVTQIFYVPPHGIQQFLVDAASSFGDSRSCVIAREITKLHEEFWRGTLGEANEAFATRQ 438
           E  T +F+  P  +   L DA    G +R   I RE+TK+HEE  RG+L E    +A   
Sbjct: 156 ERRTCVFFESPRRLAACLNDAVEQLGGARPAAICRELTKVHEEVVRGSLDEL-AIWAAGG 214

Query: 437 PKGEITILIDG 405
             GEIT+++ G
Sbjct: 215 VLGEITVVVAG 225

>Y4632_RHILO (Q98DM9) Hypothetical UPF0011 protein mlr4632|
          Length = 294

 Score = 47.0 bits (110), Expect = 5e-05
 Identities = 37/122 (30%), Positives = 59/122 (48%), Gaps = 1/122 (0%)
 Frame = -2

Query: 608 TQIFYVPPHGIQQFLVDAASSFGDSRSCVIAREITKLHEEFWRGTLGEANEAFATRQ-PK 432
           T IF+  P  + + L     + G  R   I RE+TK  EE   GTL    + +A    PK
Sbjct: 167 TLIFFESPRRLAESLGAMVEALGGERKAAIGRELTKTFEEMRTGTLRALADHYAAADTPK 226

Query: 431 GEITILIDGNSISIVEKPSDDFLEHELRELMAKGHALSTAVKLVAEATSAKKKDVYALAL 252
           GEI + + G + +  ++P+D  ++  L  L A+  A S A    A+ T  +K+ +Y   L
Sbjct: 227 GEIVVCV-GPAEAKADEPAD--IDRLLLSLAAEMPA-SKAASEAAKMTGGQKQALYRRLL 282

Query: 251 RV 246
            +
Sbjct: 283 EL 284

>Y747_RICPR (Q9ZCJ3) Hypothetical UPF0011 protein RP747|
          Length = 280

 Score = 46.2 bits (108), Expect = 8e-05
 Identities = 37/116 (31%), Positives = 59/116 (50%)
 Frame = -2

Query: 608 TQIFYVPPHGIQQFLVDAASSFGDSRSCVIAREITKLHEEFWRGTLGEANEAFATRQPKG 429
           T IF+     +   L+ A   FG+   CV ARE+TK+++E   G + E  E +     KG
Sbjct: 158 TLIFFDTASRLINTLLLAKEIFGNREICV-ARELTKIYQETKTGDIDEIIEFYKNNILKG 216

Query: 428 EITILIDGNSISIVEKPSDDFLEHELRELMAKGHALSTAVKLVAEATSAKKKDVYA 261
           EI +LI GN + +  K  +  LE  +   ++K  +  T ++L  +    K KDVY+
Sbjct: 217 EIVLLISGN-VQVQNKQIN--LEKFIEFCLSKNLSSKTIIELAYD----KFKDVYS 265

>Y071_MYCPN (P75046) Hypothetical UPF0011 protein MG056 homolog (D09_orf276)|
          Length = 276

 Score = 43.9 bits (102), Expect = 4e-04
 Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
 Frame = -2

Query: 608 TQIFYVPPHGIQQFLVDAASSFGDSRSCVIAREITKLHE-EFWRGTLGEANEAFATRQPK 432
           T + +   H +QQ L    + F ++    + RE+TKLHE  +W  T     +       K
Sbjct: 159 TIVLFEAVHRLQQTLEVIQTVFSNTE-VFVGRELTKLHESHYWFNTSAPLPDITL----K 213

Query: 431 GEITILIDGNSISIVEKPSDDFLEHELRELMAKGHALSTAVKLVAEATSAKKKDVYAL 258
           GE  I+I+ +    V + SD  L+ E+ +L+  G  +  A   +A+    K   +Y L
Sbjct: 214 GEFVIVINNHHTQPVGQYSDQLLKQEITQLVQMGVKVKDACHYLAKRLQLKSNKLYTL 271

>Y083_BUCAP (Q8KA29) Hypothetical UPF0011 protein BUsg083|
          Length = 285

 Score = 43.5 bits (101), Expect = 5e-04
 Identities = 40/132 (30%), Positives = 61/132 (46%), Gaps = 8/132 (6%)
 Frame = -2

Query: 620 REAVTQIFYVPPHGIQQFLVDAASSFGDSRSCVIAREITKLHEEFWRGTLGEANEAFA-- 447
           +E  T IFY   H I + + D   +  ++R  VIAREITK  E  +     +AN   +  
Sbjct: 157 KEIRTIIFYESKHRILESIKDIIETIDENRYLVIAREITKKWEYIYG---AKANIILSWL 213

Query: 446 ----TRQPKGEITILIDGNSISIVEKPSDDFLEHELRELMAKGHALS--TAVKLVAEATS 285
               +R  KGEI I+IDG      E  + D     +  L    + LS   +V + ++   
Sbjct: 214 KEDQSRYKKGEIVIIIDG----FKELKNKDISAKAINTLTILRNFLSLKQSVFITSKIHK 269

Query: 284 AKKKDVYALALR 249
            KK D+Y  A++
Sbjct: 270 IKKNDLYQHAIK 281

>Y091_BUCAI (P57192) Hypothetical UPF0011 protein BU091|
          Length = 282

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 6/129 (4%)
 Frame = -2

Query: 617 EAVTQIFYVPPHGIQQFLVDAASSFGDSRSCVIAREITKLHEEFWRGTLGEANEAFATR- 441
           E  T IFY   H I + + D       +R  VIARE+TK  E  +        E      
Sbjct: 157 ETRTIIFYESKHRILESIKDIIEQIDKNRHIVIAREMTKKWESIYGAKASLILEWLKENK 216

Query: 440 -QPKGEITILIDG----NSISIVEKPSDDFLEHELRELMAKGHALSTAVKLVAEATSAKK 276
            + KGE+ I+IDG     + ++ +K  D F       ++ K  +L T+V + A+     K
Sbjct: 217 YRYKGEMVIIIDGFKKLKNYTLSKKILDTF------SILRKFFSLKTSVLITAQIHDINK 270

Query: 275 KDVYALALR 249
             +Y   ++
Sbjct: 271 NKLYQYVIK 279

>Y975_TREPA (O83940) Hypothetical UPF0011 protein TP0975|
          Length = 274

 Score = 40.0 bits (92), Expect = 0.006
 Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
 Frame = -2

Query: 617 EAVTQIFYVPPHGIQQFLVDAASSFGDSRSCVIAREITKLHEEFWRGTLGEANEAFATR- 441
           + V  + Y  P+ +Q+ L D  +   +S+  V+ RE+TK+HEE   GT     E+F  R 
Sbjct: 201 QRVAFVLYESPYRVQKLLEDLVAVAPESQ-VVLGRELTKVHEELCVGTALRVMESFCART 259

Query: 440 QPKGEITILI 411
           + +GE  +L+
Sbjct: 260 RVRGECVLLV 269

>Y552_HELPY (P56204) Hypothetical UPF0011 protein HP0552|
          Length = 287

 Score = 33.1 bits (74), Expect = 0.68
 Identities = 17/69 (24%), Positives = 33/69 (47%)
 Frame = -2

Query: 617 EAVTQIFYVPPHGIQQFLVDAASSFGDSRSCVIAREITKLHEEFWRGTLGEANEAFATRQ 438
           E    +FY  PH + + L D  +          A+E+TKLH++++ G + +  E      
Sbjct: 169 EKTPVVFYESPHRLLETLKDL-NDLAKGMHLFAAKELTKLHQQYYLGEVSQIIERLQQST 227

Query: 437 PKGEITILI 411
            +GE  +++
Sbjct: 228 IQGEWVLVL 236

>Y085_BUCBP (Q89AY5) Hypothetical UPF0011 protein bbp_085|
          Length = 292

 Score = 32.7 bits (73), Expect = 0.88
 Identities = 33/126 (26%), Positives = 53/126 (42%), Gaps = 4/126 (3%)
 Frame = -2

Query: 617 EAVTQIFYVPPHGIQQFLVDAASSFGDSRSCVIAREITKLHEEFWRGTLGEANEAFATRQ 438
           E  T IF+   H I + + D  +  G  R    A+E+TK  E   + T    N     +Q
Sbjct: 160 EQRTIIFFEVTHRIIESITDIINILGPKRIITFAKELTKKWEIIQKNT--SYNILIWLKQ 217

Query: 437 ----PKGEITILIDGNSISIVEKPSDDFLEHELRELMAKGHALSTAVKLVAEATSAKKKD 270
                KGEI I+I G +       SD  L  +  +++    + + A+K+ A      K  
Sbjct: 218 NYTYKKGEIVIIISGYNNKNTNLISDAVL--KTLKILKTHLSFNKAIKITAGIYKLPKNY 275

Query: 269 VYALAL 252
           +Y  A+
Sbjct: 276 LYNYAI 281

>Y540_MYCPU (Q98RF5) Hypothetical UPF0011 protein MYPU_0540|
          Length = 222

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 20/66 (30%), Positives = 32/66 (48%)
 Frame = -2

Query: 611 VTQIFYVPPHGIQQFLVDAASSFGDSRSCVIAREITKLHEEFWRGTLGEANEAFATRQPK 432
           ++ I YV  + + Q L D    FG +    + RE+TK  E  + GT+ E  +       K
Sbjct: 152 ISYISYVSKYKLIQTLKDLKEVFGLNVEVFLTRELTKKFENDYTGTIDEIIDQLG-ESIK 210

Query: 431 GEITIL 414
           GE T++
Sbjct: 211 GEFTLI 216

>Y552_HELPJ (Q9ZLS8) Hypothetical UPF0011 protein jhp_0499|
          Length = 289

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 16/69 (23%), Positives = 32/69 (46%)
 Frame = -2

Query: 617 EAVTQIFYVPPHGIQQFLVDAASSFGDSRSCVIAREITKLHEEFWRGTLGEANEAFATRQ 438
           E    +FY  PH + + L D  +          A+E+TKLH++++ G + +         
Sbjct: 169 EKTPVVFYESPHRLLETLRDL-NDLAQGMHLFAAKELTKLHQQYYLGEISQIMTQLQKSN 227

Query: 437 PKGEITILI 411
            +GE  +++
Sbjct: 228 IQGEWVLVL 236

>ARO80_YEAST (Q04052) Transcriptional activator ARO80|
          Length = 950

 Score = 31.6 bits (70), Expect = 2.0
 Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 9/72 (12%)
 Frame = -2

Query: 269 VYALALRVFGK*VKCNPFNPIKMARYIDL--ESARDLLFPSKEIARD-------VLEIYN 117
           +++LAL+V GK  + N    +  ARY++L   SA+++L  +K ++R        V  +  
Sbjct: 643 IFSLALQVDGKTSRLNMNEIVTSARYVELAYRSAKEILSSAKRVSRQGMLKYMPVRWVIR 702

Query: 116 FLSSVCTFSDCY 81
            + S+     CY
Sbjct: 703 IIRSIAFIVKCY 714

>CDC63_HALMA (Q5V1W6) Cell division control protein 6 homolog 3 (CDC6 homolog 3)|
          Length = 403

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = -2

Query: 386 EKPSDDFLEHELRELMAKGHALSTAVKLVA--EATSAKKKDVYALALRV 246
           EK     +EH +REL   GH    A+  +A  + T A+ +DVY L  R+
Sbjct: 281 EKLEQSQVEHGMRELTKHGHLALVAMLQLAFEQETPARIRDVYPLYRRI 329

>MCRX_METFE (Q49174) Methyl-coenzyme M reductase II alpha subunit (EC 2.8.4.1)|
           (Coenzyme-B sulfoethylthiotransferase alpha) (MCR II
           alpha)
          Length = 554

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 4/96 (4%)
 Frame = -2

Query: 404 NSISIVEKPSDDFLEHELRELMAKGHALSTAVKL----VAEATSAKKKDVYALALRVFGK 237
           NS+SI    SD+ L HELR      +A++   +     +A+A  A + D + +       
Sbjct: 459 NSLSI---RSDEGLVHELRGPNYPNYAMNVGHQPEYAGIAQAPHAARGDAFVV------- 508

Query: 236 *VKCNPFNPIKMARYIDLESARDLLFPSKEIARDVL 129
                  NP+    + D + + D  +P KEIAR  L
Sbjct: 509 -------NPLIKVAFADNDLSFDFRWPRKEIARGAL 537

>GLUQ_VIBPA (Q87LV6) Glutamyl-Q tRNA(Asp) synthetase (EC 6.1.1.-) (Glu-Q-RSs)|
          Length = 294

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -2

Query: 584 HGIQQFLVDAASSFGDSRSCVIAREITKLHEEFWRGTLGEAN 459
           HG+ Q  +DA    GD+  C   R+  K H  F+ GT  + N
Sbjct: 80  HGLYQAQIDAWLDNGDAYYCQCTRKQIKEHGGFYPGTCRDKN 121

>GATB_AGRT5 (Q8UFS3) Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B|
           (EC 6.3.5.-) (Asp/Glu-ADT subunit B)
          Length = 501

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 28/93 (30%), Positives = 40/93 (43%)
 Frame = -2

Query: 401 SISIVEKPSDDFLEHELRELMAKGHALSTAVKLVAEATSAKKKDVYALALRVFGK*VKCN 222
           SI + EK   D+ E      +A G    TA   V              AL  FGK ++  
Sbjct: 341 SILVSEKAIADYYE-----AVAAGRDAKTAANWVINDLLG--------ALNKFGKDIETT 387

Query: 221 PFNPIKMARYIDLESARDLLFPSKEIARDVLEI 123
           P +P ++   IDL  A  +   S +IA+D+ EI
Sbjct: 388 PVSPDQLGGIIDLIKAETI---SGKIAKDLFEI 417

>RF1_PYRKO (Q5JGK6) Peptide chain release factor subunit 1 (Translation|
           termination factor aRF1)
          Length = 415

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
 Frame = -2

Query: 518 AREITKLHE----EFWRGTLGEANEAFATRQPKGEIT-ILIDGNSISIVEKPSDDFLEHE 354
           AR   ++ E    EF +     AN+AF     KGE+  I+I G   +  E    D+L HE
Sbjct: 181 ARRYERIREQETHEFMKRIGEHANKAFLPLLEKGELRGIIIGGPGPTKEEFVEGDYLHHE 240

Query: 353 LRE 345
           LR+
Sbjct: 241 LRK 243


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,401,116
Number of Sequences: 219361
Number of extensions: 1403027
Number of successful extensions: 4450
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 4341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4439
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5653129581
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)