ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd14c18 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_183719.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1512 Score = 182 bits (92), Expect = 6e-43 Identities = 206/244 (84%) Strand = Plus / Minus Query: 177 tgcagcaagagcagctccggcttctccaccaggcttttccactcgttgcaaaaccttgca 236 |||||||| ||| | || ||||||||||| |||||||||||||| || || ||||||||| Sbjct: 1502 tgcagcaatagccgttctggcttctccacaaggcttttccactcattacagaaccttgca 1443 Query: 237 accgtggcaccgtcgacgactctgtgatcggctccgacggtcacattgattatcgaggac 296 || ||||| ||||| || |||| |||||| ||||| || |||||||||||||| ||||| Sbjct: 1442 acggtggcgccgtcaacaactcggtgatcagctccaacagtcacattgattattgaggaa 1383 Query: 297 gggtaaacgttttcgtcatcatcaaagcgaggaagcatctgaatgcggccaagagcaatg 356 || ||||| ||||| |||||||||||||||||||| | |||||||| || || ||||| Sbjct: 1382 ggataaacattttcatcatcatcaaagcgaggaagtttttgaatgcgtccgagtgcaata 1323 Query: 357 atcgcaacctcgggtaggttgagaactggggacccaaacttgccaccgatggcgcctatg 416 || ||||| || || | |||||||| || || |||||||||||||| |||||||||||| Sbjct: 1322 atggcaacttcaggcaagttgagaagcggagagccaaacttgccaccaatggcgcctatg 1263 Query: 417 ttgc 420 |||| Sbjct: 1262 ttgc 1259
>dbj|AK067157.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013097E09, full insert sequence Length = 2003 Score = 182 bits (92), Expect = 6e-43 Identities = 206/244 (84%) Strand = Plus / Minus Query: 177 tgcagcaagagcagctccggcttctccaccaggcttttccactcgttgcaaaaccttgca 236 |||||||| ||| | || ||||||||||| |||||||||||||| || || ||||||||| Sbjct: 1753 tgcagcaatagccgttctggcttctccacaaggcttttccactcattacagaaccttgca 1694 Query: 237 accgtggcaccgtcgacgactctgtgatcggctccgacggtcacattgattatcgaggac 296 || ||||| ||||| || |||| |||||| ||||| || |||||||||||||| ||||| Sbjct: 1693 acggtggcgccgtcaacaactcggtgatcagctccaacagtcacattgattattgaggaa 1634 Query: 297 gggtaaacgttttcgtcatcatcaaagcgaggaagcatctgaatgcggccaagagcaatg 356 || ||||| ||||| |||||||||||||||||||| | |||||||| || || ||||| Sbjct: 1633 ggataaacattttcatcatcatcaaagcgaggaagtttttgaatgcgtccgagtgcaata 1574 Query: 357 atcgcaacctcgggtaggttgagaactggggacccaaacttgccaccgatggcgcctatg 416 || ||||| || || | |||||||| || || |||||||||||||| |||||||||||| Sbjct: 1573 atggcaacttcaggcaagttgagaagcggagagccaaacttgccaccaatggcgcctatg 1514 Query: 417 ttgc 420 |||| Sbjct: 1513 ttgc 1510
>gb|AY110962.1| Zea mays CL3066_1 mRNA sequence Length = 1007 Score = 163 bits (82), Expect = 6e-37 Identities = 160/186 (86%) Strand = Plus / Plus Query: 231 cttgcaaccgtggcaccgtcgacgactctgtgatcggctccgacggtcacattgattatc 290 |||||||||| ||| ||||| || |||| |||||||||||| || || ||||||||||| Sbjct: 209 cttgcaaccggggccccgtcaacaactcggtgatcggctccaacagtaacattgattatg 268 Query: 291 gaggacgggtaaacgttttcgtcatcatcaaagcgaggaagcatctgaatgcggccaaga 350 || || ||||||||||||||||||||||| |||||||||||| | ||||| || ||||| Sbjct: 269 gatgaagggtaaacgttttcgtcatcatcgaagcgaggaagcttttgaatccgcccaagg 328 Query: 351 gcaatgatcgcaacctcgggtaggttgagaactggggacccaaacttgccaccgatggcg 410 |||||||| ||||| || |||||||| |||| ||| || |||||||||||||| ||||| Sbjct: 329 gcaatgatggcaacttcaggtaggttcagaagtggagagccaaacttgccaccaatggca 388 Query: 411 cctatg 416 |||||| Sbjct: 389 cctatg 394
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 107 bits (54), Expect = 3e-20 Identities = 120/142 (84%) Strand = Plus / Plus Query: 279 acattgattatcgaggacgggtaaacgttttcgtcatcatcaaagcgaggaagcatctga 338 ||||||||||| ||||| || ||||| ||||| |||||||||||||||||||| | ||| Sbjct: 11787485 acattgattattgaggaaggataaacattttcatcatcatcaaagcgaggaagtttttga 11787544 Query: 339 atgcggccaagagcaatgatcgcaacctcgggtaggttgagaactggggacccaaacttg 398 ||||| || || ||||| || ||||| || || | |||||||| || || ||||||||| Sbjct: 11787545 atgcgtccgagtgcaataatggcaacttcaggcaagttgagaagcggagagccaaacttg 11787604 Query: 399 ccaccgatggcgcctatgttgc 420 ||||| |||||||||||||||| Sbjct: 11787605 ccaccaatggcgcctatgttgc 11787626 Score = 79.8 bits (40), Expect = 7e-12 Identities = 88/104 (84%) Strand = Plus / Plus Query: 177 tgcagcaagagcagctccggcttctccaccaggcttttccactcgttgcaaaaccttgca 236 |||||||| ||| | || ||||||||||| |||||||||||||| || || ||||||||| Sbjct: 11787290 tgcagcaatagccgttctggcttctccacaaggcttttccactcattacagaaccttgca 11787349 Query: 237 accgtggcaccgtcgacgactctgtgatcggctccgacggtcac 280 || ||||| ||||| || |||| |||||| ||||| || ||||| Sbjct: 11787350 acggtggcgccgtcaacaactcggtgatcagctccaacagtcac 11787393
>dbj|AP003722.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1011A07 Length = 150590 Score = 107 bits (54), Expect = 3e-20 Identities = 120/142 (84%) Strand = Plus / Plus Query: 279 acattgattatcgaggacgggtaaacgttttcgtcatcatcaaagcgaggaagcatctga 338 ||||||||||| ||||| || ||||| ||||| |||||||||||||||||||| | ||| Sbjct: 126653 acattgattattgaggaaggataaacattttcatcatcatcaaagcgaggaagtttttga 126712 Query: 339 atgcggccaagagcaatgatcgcaacctcgggtaggttgagaactggggacccaaacttg 398 ||||| || || ||||| || ||||| || || | |||||||| || || ||||||||| Sbjct: 126713 atgcgtccgagtgcaataatggcaacttcaggcaagttgagaagcggagagccaaacttg 126772 Query: 399 ccaccgatggcgcctatgttgc 420 ||||| |||||||||||||||| Sbjct: 126773 ccaccaatggcgcctatgttgc 126794 Score = 79.8 bits (40), Expect = 7e-12 Identities = 88/104 (84%) Strand = Plus / Plus Query: 177 tgcagcaagagcagctccggcttctccaccaggcttttccactcgttgcaaaaccttgca 236 |||||||| ||| | || ||||||||||| |||||||||||||| || || ||||||||| Sbjct: 126458 tgcagcaatagccgttctggcttctccacaaggcttttccactcattacagaaccttgca 126517 Query: 237 accgtggcaccgtcgacgactctgtgatcggctccgacggtcac 280 || ||||| ||||| || |||| |||||| ||||| || ||||| Sbjct: 126518 acggtggcgccgtcaacaactcggtgatcagctccaacagtcac 126561
>emb|AJ308111.1|LFL308111 Lampetra fluviatilis mRNA for keratin gamma 2 Length = 2068 Score = 46.1 bits (23), Expect = 0.092 Identities = 23/23 (100%) Strand = Plus / Plus Query: 186 agcagctccggcttctccaccag 208 ||||||||||||||||||||||| Sbjct: 1572 agcagctccggcttctccaccag 1594
>emb|CR936245.3| Mouse DNA sequence from clone DN-143F13 on chromosome 11, complete sequence Length = 10755 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 125 atggcagagttccctctgcat 145 ||||||||||||||||||||| Sbjct: 5976 atggcagagttccctctgcat 5996
>gb|AC009459.6| Drosophila melanogaster, chromosome 2R, region 57E-57F, BAC clone BACR34C17, complete sequence Length = 167447 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 178 gcagcaagagcagctccggct 198 ||||||||||||||||||||| Sbjct: 69253 gcagcaagagcagctccggct 69233
>gb|AC009912.5|AC009912 Drosophila melanogaster, chromosome 2R, region 57F-58A, BAC clone BACR46G10, complete sequence Length = 165158 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 178 gcagcaagagcagctccggct 198 ||||||||||||||||||||| Sbjct: 30682 gcagcaagagcagctccggct 30662
>gb|AE003454.3| Drosophila melanogaster chromosome 2R, section 62 of 73 of the complete sequence Length = 313634 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 178 gcagcaagagcagctccggct 198 ||||||||||||||||||||| Sbjct: 219789 gcagcaagagcagctccggct 219769
>gb|AC165224.9| Mus musculus chromosome 5, clone RP24-389L10, complete sequence Length = 155046 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 186 agcagctccggcttctccaccagg 209 |||||||| ||||||||||||||| Sbjct: 109076 agcagctcgggcttctccaccagg 109099
>gb|AC008569.7| Homo sapiens chromosome 19 clone CTC-548K16, complete sequence Length = 227245 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 192 tccggcttctccaccaggct 211 |||||||||||||||||||| Sbjct: 206009 tccggcttctccaccaggct 206028
>gb|AE016814.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome I, complete sequence Length = 691920 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 167 tcaccgcgtgtgcagcaagagcag 190 ||||||||||||||||||| |||| Sbjct: 399528 tcaccgcgtgtgcagcaagcgcag 399505
>gb|AC068675.17| Homo sapiens chromosome 17, clone RP11-392O1, complete sequence Length = 164611 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 123 agatggcagagttccctctg 142 |||||||||||||||||||| Sbjct: 137933 agatggcagagttccctctg 137914
>gb|AC026591.15| Homo sapiens chromosome 17, clone RP11-655D3, complete sequence Length = 153472 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 atgcacacatatgcacaggg 24 |||||||||||||||||||| Sbjct: 109715 atgcacacatatgcacaggg 109696
>emb|AL117192.5|CNS01DRE Human chromosome 14 DNA sequence BAC R-862G15 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 210869 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 201 tccaccaggcttttccactc 220 |||||||||||||||||||| Sbjct: 104962 tccaccaggcttttccactc 104981
>gb|AC110572.13| Mus musculus chromosome 5, clone RP23-316P20, complete sequence Length = 170850 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 186 agcagctccggcttctccaccagg 209 |||||||| ||||||||||||||| Sbjct: 154636 agcagctcgggcttctccaccagg 154613
>emb|AL590994.13| Mouse DNA sequence from clone RP23-382C19 on chromosome 11, complete sequence Length = 207814 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 123 agatggcagagttccctctg 142 |||||||||||||||||||| Sbjct: 205391 agatggcagagttccctctg 205410 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,889,476 Number of Sequences: 3902068 Number of extensions: 2889476 Number of successful extensions: 59272 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 18 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 59212 Number of HSP's gapped (non-prelim): 60 length of query: 421 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 399 effective length of database: 17,147,199,772 effective search space: 6841732709028 effective search space used: 6841732709028 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
