>PRP46_ASPFU (Q4WT34) Pre-mRNA-splicing factor prp46 (Pre-mRNA-processing|
           protein 46)
          Length = 453

 Score = 33.9 bits (76), Expect = 0.46
 Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
 Frame = -3

Query: 619 VWAATESGNLEVTYTHKEENGALALTGMPDAQSKPVLVCSLNDNTVRLYDLPSFSDRGRI 440
           VW      N+ V   HK   G +A   +   ++ P ++    D TVRL+DL +    G +
Sbjct: 254 VWDMRTRSNIHVLSGHK---GTVA--DLKCQEADPQIITGSLDATVRLWDLAAGKTMGVL 308

Query: 439 -FSKQEIRAIQTGPGGLFFTGDGTGELKVWQ 350
              K+ +R +   P    F    TG +K W+
Sbjct: 309 THHKKGVRNLAIHPREFTFASASTGSIKQWK 339

>PRP46_CANAL (Q5A7Q3) Pre-mRNA-splicing factor PRP46 (Pre-mRNA-processing|
           protein 46)
          Length = 389

 Score = 33.5 bits (75), Expect = 0.60
 Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
 Frame = -3

Query: 547 LTGMPDAQSKPVLVCSLNDNTVRLYDLPSFSDRGRIFS-KQEIRAIQTGP-GGLFFTGDG 374
           +T +    + P ++ S  D T+RL+DL        I +  + IR++++ P    F +GD 
Sbjct: 220 ITSIETDYNDPQVITSSMDGTIRLWDLRKSKTELLITNHSKSIRSMKSHPKEATFVSGDS 279

Query: 373 TGELKVW 353
            GE+K W
Sbjct: 280 NGEIKQW 286

>PRP46_SCHPO (O13615) Pre-mRNA-splicing factor prp46 (Pre-mRNA-processing|
           protein 5) (Complexed with cdc5 protein 1)
          Length = 473

 Score = 33.1 bits (74), Expect = 0.79
 Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 1/92 (1%)
 Frame = -3

Query: 619 VWAATESGNLEVTYTHKEENGALALTGMPDAQSKPVLVCSLNDNTVRLYDLPSFSDRGRI 440
           VW      N+ V   HK    +LA+      +  P +V    D+T+RL+DL +      +
Sbjct: 273 VWDMRTRQNVHVLSGHKSTVASLAVQ-----EFDPQVVTGSMDSTIRLWDLAAGKTLTTL 327

Query: 439 -FSKQEIRAIQTGPGGLFFTGDGTGELKVWQW 347
              K+ +RA+   P    F    +  +K W++
Sbjct: 328 THHKKTVRALSLHPDEFTFASGSSDNIKHWKF 359

>PLRG1_HUMAN (O43660) Pleiotropic regulator 1|
          Length = 514

 Score = 30.4 bits (67), Expect = 5.1
 Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = -3

Query: 523 SKPVLVCSLNDNTVRLYDLPSFSDRGRIFS-KQEIRAIQTGPGGLFFTGDGTGELKVWQW 347
           ++P ++   +D T+RL+DL +   R  + + K+ +RA+   P    F       +K W++
Sbjct: 341 AEPQIITGSHDTTIRLWDLVAGKTRVTLTNHKKSVRAVVLHPRHYTFASGSPDNIKQWKF 400

>TRMD_RHIME (Q92L41) tRNA (guanine-N(1)-)-methyltransferase (EC 2.1.1.31)|
           (M1G-methyltransferase) (tRNA [GM37] methyltransferase)
          Length = 240

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 23/88 (26%), Positives = 38/88 (43%)
 Frame = -3

Query: 601 SGNLEVTYTHKEENGALALTGMPDAQSKPVLVCSLNDNTVRLYDLPSFSDRGRIFSKQEI 422
           +G+   T       G   +   PD  ++ +   + +D   RL      S RGR  +++ +
Sbjct: 44  AGDKHRTVDDTPAGGGAGMVLKPDVLARAIDHVAADDGRPRLL----MSPRGRPLTQERV 99

Query: 421 RAIQTGPGGLFFTGDGTGELKVWQWIID 338
           RA+  GPG +   G   G   V Q +ID
Sbjct: 100 RALAAGPGAVVVCGRFEG---VDQRVID 124

>PUR5_PASMU (Q9CPL6) Phosphoribosylformylglycinamidine cyclo-ligase (EC|
           6.3.3.1) (AIRS) (Phosphoribosyl-aminoimidazole
           synthetase) (AIR synthase)
          Length = 345

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
 Frame = +3

Query: 480 RTVLSFNEHTSTGFD----CASGMPVRASAPFSSLCVYVTSKFPLSVAA 614
           R  +  N H S G D    C + + V+ + P   L  Y T K  + VAA
Sbjct: 71  RLAIDLNRHDSIGIDLVAMCVNDLVVQGAEPLFFLDYYATGKLDVDVAA 119

>PLRG1_RAT (Q9WUC8) Pleiotropic regulator 1|
          Length = 514

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = -3

Query: 523 SKPVLVCSLNDNTVRLYDLPSFSDRGRIFS-KQEIRAIQTGPGGLFFTGDGTGELKVWQW 347
           ++P ++   +D T+RL+DL +   R  + + K+ +RA+   P    F       +K W++
Sbjct: 341 AEPQIITGSHDTTIRLWDLVAGKTRVTLTNHKKSVRAVVLHPLHYTFASGSPDNIKQWKF 400


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,596,513
Number of Sequences: 219361
Number of extensions: 2293061
Number of successful extensions: 4758
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4757
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6598423128
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)