ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd14c13 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK102324.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033090J15, full insert sequence Length = 3505 Score = 333 bits (168), Expect = 4e-88 Identities = 240/264 (90%) Strand = Plus / Minus Query: 293 gggaaactaatctagagtacactatatccatcaggtttgggaggcatcaataatccattg 352 ||||||||||||||||||||||||||| ||| ||| ||||| ||||||||| |||||| Sbjct: 3138 gggaaactaatctagagtacactatattcatttggtctgggatccatcaataacccattg 3079 Query: 353 ccaaaccttcagctcaccggttccatccccagtgaaaaataaaccaccaggaccagtttg 412 ||| |||||||||||||| |||||||||||||| ||||||||||||| ||||||| ||| Sbjct: 3078 ccacaccttcagctcaccagttccatccccagtaaaaaataaaccactaggaccaacttg 3019 Query: 413 tattgccctaatttcctgcttggagaatattcttcccctatcactgaacgatggcaggtc 472 ||||||||| |||||||| || |||||||| || |||||||||||||||||||||||||| Sbjct: 3018 tattgcccttatttcctgttttgagaatatcctgcccctatcactgaacgatggcaggtc 2959 Query: 473 atagagtcggacagtgttgtcatttaatgaacatactagcacaggttttgattgtgcatc 532 ||| |||||||||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct: 2958 atatagtcggacagtgttgtcatttagtgaacatagtagcacaggttttgattgtgcatc 2899 Query: 533 aggcatgccagtaagagcaagtgc 556 |||||||||| | || |||||||| Sbjct: 2898 aggcatgccacttagggcaagtgc 2875 Score = 95.6 bits (48), Expect = 2e-16 Identities = 79/88 (89%), Gaps = 1/88 (1%) Strand = Plus / Minus Query: 563 ctcctctttgtgtgtatatgttacttctaagtttccactttctgtagctgcccagacct- 621 ||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||| Sbjct: 1544 ctcctctttgtgtgtatatgttacttccaagcttccactttctgtagctgcccaaacctg 1485 Query: 622 aagaaaaatagaacttagaagtatgaat 649 |||| ||| | | | ||||||||||||| Sbjct: 1484 aagagaaacacagcgtagaagtatgaat 1457
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 192 bits (97), Expect = 1e-45 Identities = 151/169 (89%) Strand = Plus / Minus Query: 293 gggaaactaatctagagtacactatatccatcaggtttgggaggcatcaataatccattg 352 ||||||||||||||||||||||||||| ||| ||| ||||| ||||||||| |||||| Sbjct: 27685476 gggaaactaatctagagtacactatattcatttggtctgggatccatcaataacccattg 27685417 Query: 353 ccaaaccttcagctcaccggttccatccccagtgaaaaataaaccaccaggaccagtttg 412 ||| |||||||||||||| |||||||||||||| ||||||||||||| ||||||| ||| Sbjct: 27685416 ccacaccttcagctcaccagttccatccccagtaaaaaataaaccactaggaccaacttg 27685357 Query: 413 tattgccctaatttcctgcttggagaatattcttcccctatcactgaac 461 ||||||||| |||||||| || |||||||| || ||||||||||||||| Sbjct: 27685356 tattgcccttatttcctgttttgagaatatcctgcccctatcactgaac 27685308 Score = 145 bits (73), Expect = 2e-31 Identities = 91/97 (93%) Strand = Plus / Minus Query: 460 acgatggcaggtcatagagtcggacagtgttgtcatttaatgaacatactagcacaggtt 519 |||||||||||||||| |||||||||||||||||||||| |||||||| ||||||||||| Sbjct: 27685232 acgatggcaggtcatatagtcggacagtgttgtcatttagtgaacatagtagcacaggtt 27685173 Query: 520 ttgattgtgcatcaggcatgccagtaagagcaagtgc 556 ||||||||||||||||||||||| | || |||||||| Sbjct: 27685172 ttgattgtgcatcaggcatgccacttagggcaagtgc 27685136 Score = 95.6 bits (48), Expect = 2e-16 Identities = 79/88 (89%), Gaps = 1/88 (1%) Strand = Plus / Minus Query: 563 ctcctctttgtgtgtatatgttacttctaagtttccactttctgtagctgcccagacct- 621 ||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||| Sbjct: 27683805 ctcctctttgtgtgtatatgttacttccaagcttccactttctgtagctgcccaaacctg 27683746 Query: 622 aagaaaaatagaacttagaagtatgaat 649 |||| ||| | | | ||||||||||||| Sbjct: 27683745 aagagaaacacagcgtagaagtatgaat 27683718
>dbj|AP006060.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0135D07 Length = 170587 Score = 192 bits (97), Expect = 1e-45 Identities = 151/169 (89%) Strand = Plus / Minus Query: 293 gggaaactaatctagagtacactatatccatcaggtttgggaggcatcaataatccattg 352 ||||||||||||||||||||||||||| ||| ||| ||||| ||||||||| |||||| Sbjct: 165145 gggaaactaatctagagtacactatattcatttggtctgggatccatcaataacccattg 165086 Query: 353 ccaaaccttcagctcaccggttccatccccagtgaaaaataaaccaccaggaccagtttg 412 ||| |||||||||||||| |||||||||||||| ||||||||||||| ||||||| ||| Sbjct: 165085 ccacaccttcagctcaccagttccatccccagtaaaaaataaaccactaggaccaacttg 165026 Query: 413 tattgccctaatttcctgcttggagaatattcttcccctatcactgaac 461 ||||||||| |||||||| || |||||||| || ||||||||||||||| Sbjct: 165025 tattgcccttatttcctgttttgagaatatcctgcccctatcactgaac 164977 Score = 145 bits (73), Expect = 2e-31 Identities = 91/97 (93%) Strand = Plus / Minus Query: 460 acgatggcaggtcatagagtcggacagtgttgtcatttaatgaacatactagcacaggtt 519 |||||||||||||||| |||||||||||||||||||||| |||||||| ||||||||||| Sbjct: 164901 acgatggcaggtcatatagtcggacagtgttgtcatttagtgaacatagtagcacaggtt 164842 Query: 520 ttgattgtgcatcaggcatgccagtaagagcaagtgc 556 ||||||||||||||||||||||| | || |||||||| Sbjct: 164841 ttgattgtgcatcaggcatgccacttagggcaagtgc 164805 Score = 95.6 bits (48), Expect = 2e-16 Identities = 79/88 (89%), Gaps = 1/88 (1%) Strand = Plus / Minus Query: 563 ctcctctttgtgtgtatatgttacttctaagtttccactttctgtagctgcccagacct- 621 ||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||| Sbjct: 163474 ctcctctttgtgtgtatatgttacttccaagcttccactttctgtagctgcccaaacctg 163415 Query: 622 aagaaaaatagaacttagaagtatgaat 649 |||| ||| | | | ||||||||||||| Sbjct: 163414 aagagaaacacagcgtagaagtatgaat 163387
>dbj|AP005775.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0005A04 Length = 140723 Score = 192 bits (97), Expect = 1e-45 Identities = 151/169 (89%) Strand = Plus / Minus Query: 293 gggaaactaatctagagtacactatatccatcaggtttgggaggcatcaataatccattg 352 ||||||||||||||||||||||||||| ||| ||| ||||| ||||||||| |||||| Sbjct: 71342 gggaaactaatctagagtacactatattcatttggtctgggatccatcaataacccattg 71283 Query: 353 ccaaaccttcagctcaccggttccatccccagtgaaaaataaaccaccaggaccagtttg 412 ||| |||||||||||||| |||||||||||||| ||||||||||||| ||||||| ||| Sbjct: 71282 ccacaccttcagctcaccagttccatccccagtaaaaaataaaccactaggaccaacttg 71223 Query: 413 tattgccctaatttcctgcttggagaatattcttcccctatcactgaac 461 ||||||||| |||||||| || |||||||| || ||||||||||||||| Sbjct: 71222 tattgcccttatttcctgttttgagaatatcctgcccctatcactgaac 71174 Score = 145 bits (73), Expect = 2e-31 Identities = 91/97 (93%) Strand = Plus / Minus Query: 460 acgatggcaggtcatagagtcggacagtgttgtcatttaatgaacatactagcacaggtt 519 |||||||||||||||| |||||||||||||||||||||| |||||||| ||||||||||| Sbjct: 71098 acgatggcaggtcatatagtcggacagtgttgtcatttagtgaacatagtagcacaggtt 71039 Query: 520 ttgattgtgcatcaggcatgccagtaagagcaagtgc 556 ||||||||||||||||||||||| | || |||||||| Sbjct: 71038 ttgattgtgcatcaggcatgccacttagggcaagtgc 71002 Score = 95.6 bits (48), Expect = 2e-16 Identities = 79/88 (89%), Gaps = 1/88 (1%) Strand = Plus / Minus Query: 563 ctcctctttgtgtgtatatgttacttctaagtttccactttctgtagctgcccagacct- 621 ||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||| Sbjct: 69671 ctcctctttgtgtgtatatgttacttccaagcttccactttctgtagctgcccaaacctg 69612 Query: 622 aagaaaaatagaacttagaagtatgaat 649 |||| ||| | | | ||||||||||||| Sbjct: 69611 aagagaaacacagcgtagaagtatgaat 69584
>ref|NM_118676.3| Arabidopsis thaliana ZFWD1; nucleic acid binding AT4G25440 (ZFWD1) mRNA, complete cds Length = 1799 Score = 60.0 bits (30), Expect = 1e-05 Identities = 45/50 (90%) Strand = Plus / Minus Query: 567 tctttgtgtgtatatgttacttctaagtttccactttctgtagctgccca 616 |||||||| |||||||| |||||||||||||||| ||| ||||| ||||| Sbjct: 1169 tctttgtgagtatatgtcacttctaagtttccaccttcagtagcagccca 1120
>emb|AL079350.1|ATT30C3 Arabidopsis thaliana DNA chromosome 4, BAC clone T30C3 (ESSA project) Length = 77793 Score = 60.0 bits (30), Expect = 1e-05 Identities = 45/50 (90%) Strand = Plus / Plus Query: 567 tctttgtgtgtatatgttacttctaagtttccactttctgtagctgccca 616 |||||||| |||||||| |||||||||||||||| ||| ||||| ||||| Sbjct: 56887 tctttgtgagtatatgtcacttctaagtttccaccttcagtagcagccca 56936
>emb|AL161563.2|ATCHRIV63 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 63 Length = 198777 Score = 60.0 bits (30), Expect = 1e-05 Identities = 45/50 (90%) Strand = Plus / Plus Query: 567 tctttgtgtgtatatgttacttctaagtttccactttctgtagctgccca 616 |||||||| |||||||| |||||||||||||||| ||| ||||| ||||| Sbjct: 89769 tctttgtgagtatatgtcacttctaagtttccaccttcagtagcagccca 89818
>emb|AL022197.2|ATM7J2 Arabidopsis thaliana DNA chromosome 4, P1 clone M7J2 (ESSA project) Length = 80386 Score = 60.0 bits (30), Expect = 1e-05 Identities = 45/50 (90%) Strand = Plus / Minus Query: 567 tctttgtgtgtatatgttacttctaagtttccactttctgtagctgccca 616 |||||||| |||||||| |||||||||||||||| ||| ||||| ||||| Sbjct: 65049 tctttgtgagtatatgtcacttctaagtttccaccttcagtagcagccca 65000
>emb|BX827814.1|CNS0A4AK Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH24ZB04 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1769 Score = 60.0 bits (30), Expect = 1e-05 Identities = 45/50 (90%) Strand = Plus / Minus Query: 567 tctttgtgtgtatatgttacttctaagtttccactttctgtagctgccca 616 |||||||| |||||||| |||||||||||||||| ||| ||||| ||||| Sbjct: 1171 tctttgtgagtatatgtcacttctaagtttccaccttcagtagcagccca 1122
>emb|AJ252063.1|ATH252063 Arabidopsis thaliana partial mRNA for zfwd1 protein (zfwd1 gene) Length = 1293 Score = 60.0 bits (30), Expect = 1e-05 Identities = 45/50 (90%) Strand = Plus / Minus Query: 567 tctttgtgtgtatatgttacttctaagtttccactttctgtagctgccca 616 |||||||| |||||||| |||||||||||||||| ||| ||||| ||||| Sbjct: 1043 tctttgtgagtatatgtcacttctaagtttccaccttcagtagcagccca 994
>ref|XM_473570.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 4995 Score = 58.0 bits (29), Expect = 4e-05 Identities = 56/65 (86%) Strand = Plus / Minus Query: 523 attgtgcatcaggcatgccagtaagagcaagtgcaccattctcctctttgtgtgtatatg 582 |||||||||| |||| |||| ||||||||||||||||| || || || |||||||||| Sbjct: 4174 attgtgcatcttgcataccagcaagagcaagtgcaccatgatcttcgttatgtgtatatg 4115 Query: 583 ttact 587 ||||| Sbjct: 4114 ttact 4110
>dbj|AK103254.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033123O13, full insert sequence Length = 1946 Score = 58.0 bits (29), Expect = 4e-05 Identities = 56/65 (86%) Strand = Plus / Minus Query: 523 attgtgcatcaggcatgccagtaagagcaagtgcaccattctcctctttgtgtgtatatg 582 |||||||||| |||| |||| ||||||||||||||||| || || || |||||||||| Sbjct: 1222 attgtgcatcttgcataccagcaagagcaagtgcaccatgatcttcgttatgtgtatatg 1163 Query: 583 ttact 587 ||||| Sbjct: 1162 ttact 1158
>emb|BX828187.1|CNS0A3QV Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH61ZD07 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1800 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 567 tctttgtgtgtatatgttacttctaagtttccac 600 |||||||| |||||||| |||||||||||||||| Sbjct: 1163 tctttgtgagtatatgtcacttctaagtttccac 1130
>ref|XM_460148.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0E20493g) partial mRNA Length = 3849 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 583 ttacttctaagtttccacttt 603 ||||||||||||||||||||| Sbjct: 2564 ttacttctaagtttccacttt 2584
>emb|CR382137.1| Debaryomyces hansenii chromosome E of strain CBS767 of Debaryomyces hansenii Length = 2037969 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 583 ttacttctaagtttccacttt 603 ||||||||||||||||||||| Sbjct: 1618778 ttacttctaagtttccacttt 1618758
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 2.3 Identities = 33/37 (89%) Strand = Plus / Minus Query: 523 attgtgcatcaggcatgccagtaagagcaagtgcacc 559 |||||||||| |||| |||| ||||||||||||||| Sbjct: 28824920 attgtgcatcttgcataccagcaagagcaagtgcacc 28824884 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 538 tgccagtaagagcaagtgcaccat 561 ||||||||||| |||||||||||| Sbjct: 31207025 tgccagtaagaacaagtgcaccat 31207002
>gb|AC016950.8|AC016950 Homo sapiens 3 BAC RP11-239I11 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 159217 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 559 cattctcctctttgtgtgtatatgt 583 ||||||||||||||||||| ||||| Sbjct: 132040 cattctcctctttgtgtgtctatgt 132064
>emb|AL606640.4|OSJN00071 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0019K04, complete sequence Length = 154865 Score = 42.1 bits (21), Expect = 2.3 Identities = 33/37 (89%) Strand = Plus / Minus Query: 523 attgtgcatcaggcatgccagtaagagcaagtgcacc 559 |||||||||| |||| |||| ||||||||||||||| Sbjct: 36982 attgtgcatcttgcataccagcaagagcaagtgcacc 36946
>gb|AC164069.9| Mus musculus chromosome 15, clone RP23-422H17, complete sequence Length = 216364 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 550 caagtgcaccattctcctct 569 |||||||||||||||||||| Sbjct: 208391 caagtgcaccattctcctct 208372
>gb|AY757366.1| Mus musculus koala (Koa) chromosome 15 inversion, proximal breakpoint region Length = 934 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 550 caagtgcaccattctcctct 569 |||||||||||||||||||| Sbjct: 506 caagtgcaccattctcctct 487
>gb|AC165090.3| Mus musculus BAC clone RP23-95H4 from chromosome 8, complete sequence Length = 252334 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 615 cagacctaagaaaaatagaa 634 |||||||||||||||||||| Sbjct: 51692 cagacctaagaaaaatagaa 51711
>gb|AC162693.5| Mus musculus chromosome 15, clone RP24-89G21, complete sequence Length = 159813 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 550 caagtgcaccattctcctct 569 |||||||||||||||||||| Sbjct: 58709 caagtgcaccattctcctct 58690
>gb|AC148875.2| Pan troglodytes BAC clone CH251-198I11 from Y, complete sequence Length = 182437 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 356 aaccttcagctcaccggttc 375 |||||||||||||||||||| Sbjct: 51112 aaccttcagctcaccggttc 51093
>gb|AC148937.2| Pan troglodytes BAC clone CH251-485I7 from Y, complete sequence Length = 184818 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 356 aaccttcagctcaccggttc 375 |||||||||||||||||||| Sbjct: 86707 aaccttcagctcaccggttc 86726
>gb|AC147127.2| Pan troglodytes BAC clone CH251-410H20 from Y, complete sequence Length = 169143 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 356 aaccttcagctcaccggttc 375 |||||||||||||||||||| Sbjct: 19075 aaccttcagctcaccggttc 19094
>gb|DQ481667.1| Takifugu rubripes HoxCa gene cluster, complete sequence Length = 378763 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 123 ccagaaatacactagcgttcatac 146 |||||||||||||| ||||||||| Sbjct: 273032 ccagaaatacactatcgttcatac 273009
>gb|AC109170.10| Mus musculus chromosome 8, clone RP23-87B3, complete sequence Length = 274518 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 615 cagacctaagaaaaatagaa 634 |||||||||||||||||||| Sbjct: 5308 cagacctaagaaaaatagaa 5289
>gb|AC148941.3| Pan troglodytes BAC clone CH251-41G22 from chromosome y, complete sequence Length = 243842 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 356 aaccttcagctcaccggttc 375 |||||||||||||||||||| Sbjct: 183722 aaccttcagctcaccggttc 183741
>gb|AC118206.11| Mus musculus chromosome 3, clone RP24-159J16, complete sequence Length = 255036 Score = 40.1 bits (20), Expect = 9.2 Identities = 29/32 (90%) Strand = Plus / Plus Query: 389 aaataaaccaccaggaccagtttgtattgccc 420 ||||||||||||| | ||||||||| |||||| Sbjct: 140609 aaataaaccaccaagtccagtttgtgttgccc 140640
>gb|AC123794.4| Mus musculus BAC clone RP24-315P14 from chromosome 8, complete sequence Length = 187246 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 615 cagacctaagaaaaatagaa 634 |||||||||||||||||||| Sbjct: 14613 cagacctaagaaaaatagaa 14594
>gb|AC139746.15| Medicago truncatula clone mth2-17b20, complete sequence Length = 118157 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 325 aggtttgggaggcatcaata 344 |||||||||||||||||||| Sbjct: 28899 aggtttgggaggcatcaata 28918
>gb|AC148177.13| Medicago truncatula clone mth2-4c9, complete sequence Length = 117329 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 325 aggtttgggaggcatcaata 344 |||||||||||||||||||| Sbjct: 86666 aggtttgggaggcatcaata 86685
>emb|Z83745.1|HS453A3 Human DNA sequence from clone RP3-453A3 on chromosome Xp11 Contains a protein phosphatase 1, regulatory (inhibitor) subunit 11 (PPP1R11) pseudogene and the 5' end of the gene for a novel protein (FLJ31204), complete sequence Length = 130926 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 564 tcctctttgtgtgtatatgt 583 |||||||||||||||||||| Sbjct: 21401 tcctctttgtgtgtatatgt 21382
>emb|AL591518.8| Human DNA sequence from clone RP11-114N1 on chromosome 6 Contains a CpG island, complete sequence Length = 119021 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 556 caccattctcctctttgtgt 575 |||||||||||||||||||| Sbjct: 66179 caccattctcctctttgtgt 66160
>emb|AL512489.11| Human DNA sequence from clone RP11-447O8 on chromosome 6, complete sequence Length = 80846 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 656 aaaaggataaatatgtaatt 675 |||||||||||||||||||| Sbjct: 15396 aaaaggataaatatgtaatt 15415
>gb|AC154487.2| Mus musculus BAC clone RP24-119I4 from chromosome 14, complete sequence Length = 199036 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 637 tagaagtatgaattgattga 656 |||||||||||||||||||| Sbjct: 109459 tagaagtatgaattgattga 109440
>emb|AL662950.2|OSJN00152 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0008M17, complete sequence Length = 133279 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 538 tgccagtaagagcaagtgcaccat 561 ||||||||||| |||||||||||| Sbjct: 28626 tgccagtaagaacaagtgcaccat 28603
>gb|AC099061.2| Homo sapiens chromosome 1 clone RP11-105D8, complete sequence Length = 140987 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 567 tctttgtgtgtatatgttac 586 |||||||||||||||||||| Sbjct: 72240 tctttgtgtgtatatgttac 72259
>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence Length = 23952694 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 356 aaccttcagctcaccggttc 375 |||||||||||||||||||| Sbjct: 9400131 aaccttcagctcaccggttc 9400112 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 356 aaccttcagctcaccggttc 375 |||||||||||||||||||| Sbjct: 8667528 aaccttcagctcaccggttc 8667509 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 356 aaccttcagctcaccggttc 375 |||||||||||||||||||| Sbjct: 7931625 aaccttcagctcaccggttc 7931606
>gb|AC087373.4| Homo sapiens chromosome 11, clone RP11-54J7, complete sequence Length = 200604 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 561 ttctcctctttgtgtgtatatgtt 584 |||||||||||||||| ||||||| Sbjct: 193184 ttctcctctttgtgtgcatatgtt 193207
>dbj|AB232923.1| Oryzias latipes hox gene cluster, complete cds, contains hoxDa Length = 225033 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 653 ttgaaaaggataaatatgta 672 |||||||||||||||||||| Sbjct: 74639 ttgaaaaggataaatatgta 74658
>gb|AC090982.4| Homo sapiens chromosome 15, clone RP11-88O16, complete sequence Length = 195549 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 567 tctttgtgtgtatatgttac 586 |||||||||||||||||||| Sbjct: 75737 tctttgtgtgtatatgttac 75756
>gb|U96112.1|AAOEH3 Aedes aegypti ovarian ecdysteroidogenic hormone I (OEH-I) gene, exon 2 and complete cds Length = 2939 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 647 aattgattgaaaaggataaatatg 670 |||||||||||||||| ||||||| Sbjct: 381 aattgattgaaaaggaaaaatatg 358
>gb|AC147334.4| Pan troglodytes BAC clone CH251-372D20 from chromosome y, complete sequence Length = 211310 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 356 aaccttcagctcaccggttc 375 |||||||||||||||||||| Sbjct: 187152 aaccttcagctcaccggttc 187133
>gb|AC093850.2| Homo sapiens BAC clone RP11-489P15 from 2, complete sequence Length = 131727 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 586 cttctaagtttccactttct 605 |||||||||||||||||||| Sbjct: 15786 cttctaagtttccactttct 15767
>dbj|BA000016.3| Clostridium perfringens str. 13 DNA, complete genome Length = 3031430 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 586 cttctaagtttccactttct 605 |||||||||||||||||||| Sbjct: 2113749 cttctaagtttccactttct 2113768
>emb|CT030245.8| M.truncatula DNA sequence from clone MTH2-59B18 on chromosome 3, complete sequence Length = 128436 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 619 cctaagaaaaatagaactta 638 |||||||||||||||||||| Sbjct: 47084 cctaagaaaaatagaactta 47103
>emb|AL928550.20| Mouse DNA sequence from clone RP23-272I15 on chromosome 2, complete sequence Length = 99786 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 393 aaaccaccaggaccagtttgtatt 416 ||||||||||| |||||||||||| Sbjct: 87322 aaaccaccaggtccagtttgtatt 87299
>emb|AL133368.6|CNS01DUT Human chromosome 14 DNA sequence BAC R-436M15 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 163272 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 331 gggaggcatcaataatccat 350 |||||||||||||||||||| Sbjct: 125264 gggaggcatcaataatccat 125283 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,749,717 Number of Sequences: 3902068 Number of extensions: 6749717 Number of successful extensions: 128449 Number of sequences better than 10.0: 49 Number of HSP's better than 10.0 without gapping: 50 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 128170 Number of HSP's gapped (non-prelim): 279 length of query: 675 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 652 effective length of database: 17,143,297,704 effective search space: 11177430103008 effective search space used: 11177430103008 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
