>PMYT1_HUMAN (Q99640) Membrane-associated tyrosine- and threonine-specific|
           cdc2-inhibitory kinase (EC 2.7.11.1) (Myt1 kinase)
          Length = 499

 Score = 33.5 bits (75), Expect = 0.61
 Identities = 24/63 (38%), Positives = 31/63 (49%)
 Frame = +2

Query: 359 ASLQVSSLQQPQAWGCLSECYKLKLYLDLSSALSGGPCLIQCYQMFLQVQM*HSLHHPAE 538
           A L +  L+QP+AWG L        +   + ALS G  L Q   + L   + H L HPA 
Sbjct: 352 ALLALPVLRQPRAWGVL--------WCMAAEALSRGWALWQAL-LALLCWLWHGLAHPAS 402

Query: 539 WLQ 547
           WLQ
Sbjct: 403 WLQ 405

>FLAA2_HALSA (P13075) Flagellin A2 precursor|
          Length = 194

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -2

Query: 620 IRMSKQIYAWIGCNQSAKFGHLYAAATTRLGDGVSVTSVLGGTSD 486
           I +SK    WIG +++    H  AA  T LG+  + TS+ G   +
Sbjct: 92  INLSKSTIQWIGPDKATTLTHANAADKTTLGEEFNTTSIKGNNDN 136

>NCAP_IHNV (P19691) Nucleocapsid protein (Nucleoprotein)|
          Length = 413

 Score = 30.0 bits (66), Expect = 6.8
 Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 10/122 (8%)
 Frame = -2

Query: 617 RMSKQIYAWIGCNQS--AKFGHLYAAATTRL-GDGVSVTSVLGGTSDNTGS-------SM 468
           +++K IY  I  N S  A      A    RL G G+++  +    + N G+        +
Sbjct: 187 KLTKAIYGIILINLSDPATAARAKALCAMRLSGTGMTMVGLFNQAAKNLGALPADLLEDL 246

Query: 467 ARRLVLKTGLNIILACNIPKDSPMLEAAAERKLVEKLRSLGYIRSKPVEANASTTC*WIL 288
             + V+++   I+    I  ++P + AA    ++ ++  +GY ++  +  NA  TC  IL
Sbjct: 247 CMKSVVESARRIVRLMRIVAEAPGV-AAKYGVMMSRMLGVGYFKAYGINENARITC--IL 303

Query: 287 VN 282
           +N
Sbjct: 304 MN 305


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,462,183
Number of Sequences: 219361
Number of extensions: 1930602
Number of successful extensions: 4622
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4621
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6712189044
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)