ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd13k20 |
|---|---|
| Clone Library Name | barley_pub |
>SMRC2_MOUSE (Q6PDG5) SWI/SNF-related matrix-associated actin-dependent regulator| of chromatin subfamily C member 2 (SWI/SNF complex 170 kDa subunit) (BRG1-associated factor 170) Length = 1213 Score = 33.1 bits (74), Expect = 0.67 Identities = 23/63 (36%), Positives = 26/63 (41%), Gaps = 5/63 (7%) Frame = +2 Query: 170 LPPPAVLSAPHHLLPFQKG*AVPKRLGSSFGFP-----PAAFVQRTSAGVVSGLDDTMAE 334 LPPP L HH LPF G P L S P PA +S + GL A+ Sbjct: 1109 LPPPPNLHGHHHHLPFAPGTIPPPNLPVSMANPLHPNLPATTTMPSSLPLGPGLGSAAAQ 1168 Query: 335 SAA 343 S A Sbjct: 1169 SPA 1171
>TOF1_YEAST (P53840) Topoisomerase 1-associated factor 1| Length = 1238 Score = 31.2 bits (69), Expect = 2.5 Identities = 17/48 (35%), Positives = 23/48 (47%) Frame = -3 Query: 239 LVQPSLFGMEEDDVVRRGPLEVVNTNQSKACVGSLVKLLPDDDAMPPS 96 L+ P L E R G V+N A S K +PD++A+PPS Sbjct: 763 LLFPPLHNSEVGFYQRYGEYNVLNNESMYAAPASQFKPIPDEEALPPS 810
>SIN3A_MOUSE (Q60520) Paired amphipathic helix protein Sin3a (Transcriptional| corepressor Sin3a) (Histone deacetylase complex subunit Sin3a) Length = 1282 Score = 30.8 bits (68), Expect = 3.3 Identities = 12/37 (32%), Positives = 24/37 (64%) Frame = -2 Query: 585 SLEVMDDFKVANGLECKITCKSSKVSYVLDTEDFLFR 475 S + M++ + + LEC+ S K+ YV+ +ED+++R Sbjct: 1161 SKKTMENVESLDKLECRFKLNSYKMVYVIKSEDYMYR 1197
>SIN3A_HUMAN (Q96ST3) Paired amphipathic helix protein Sin3a (Transcriptional| corepressor Sin3a) (Histone deacetylase complex subunit Sin3a) Length = 1273 Score = 30.8 bits (68), Expect = 3.3 Identities = 14/47 (29%), Positives = 26/47 (55%) Frame = -2 Query: 615 KRGSSNGPQASLEVMDDFKVANGLECKITCKSSKVSYVLDTEDFLFR 475 K G + ++E +D + LEC+ S K+ YV+ +ED+++R Sbjct: 1145 KEGKEGNSKKTMENVDSL---DKLECRFKLNSYKMVYVIKSEDYMYR 1188
>ZMYM6_HUMAN (O95789) Zinc finger MYM-type protein 6 (Zinc finger protein 258)| Length = 723 Score = 30.0 bits (66), Expect = 5.7 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 6/48 (12%) Frame = +3 Query: 477 GIKSLLYQGHTKPLR------ICRLSCIQGHSQP*NHP*PPRKLEDHC 602 G K +LY+G T + C CI HS P P PP+K +C Sbjct: 94 GCKKMLYKGQTAYHKTGSTQLFCSTRCITRHSSPACLPPPPKKTCTNC 141
>SMRC2_HUMAN (Q8TAQ2) SWI/SNF-related matrix-associated actin-dependent regulator| of chromatin subfamily C member 2 (SWI/SNF complex 170 kDa subunit) (BRG1-associated factor 170) Length = 1214 Score = 30.0 bits (66), Expect = 5.7 Identities = 22/63 (34%), Positives = 25/63 (39%), Gaps = 5/63 (7%) Frame = +2 Query: 170 LPPPAVLSAPHHLLPFQKG*AVPKRLGSSFGFP-----PAAFVQRTSAGVVSGLDDTMAE 334 LP P L HH LPF G P L S P PA +S + GL A+ Sbjct: 1110 LPAPPNLHGHHHHLPFAPGTLPPPNLPVSMANPLHPNLPATTTMPSSLPLGPGLGSAAAQ 1169 Query: 335 SAA 343 S A Sbjct: 1170 SPA 1172
>RPOA_PHAAN (Q8MC99) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase alpha subunit) (RNA polymerase alpha subunit) Length = 333 Score = 29.6 bits (65), Expect = 7.4 Identities = 27/78 (34%), Positives = 37/78 (47%), Gaps = 1/78 (1%) Frame = +1 Query: 244 VGKQLRFPTRRICSKNVGRRRLGIR*YHGRICSMALGPGQKEFMKPLCFHGISWLDKISL 423 V ++LRF TR + K V R R Y+GR L GQ + + GI+ + +I L Sbjct: 2 VQEKLRFSTRTLQWKCVESRIESKRLYYGRFILSPLMKGQADTI------GIA-IRRILL 54 Query: 424 ARCRG-CCTR*DSPPVPH 474 G C TR S +PH Sbjct: 55 GEIEGTCITRVKSEKIPH 72
>MFD_MYCTU (P64326) Transcription-repair coupling factor (EC 3.6.1.-) (TRCF)| (ATP-dependent helicase mfd) Length = 1234 Score = 29.3 bits (64), Expect = 9.7 Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 9/74 (12%) Frame = -3 Query: 296 PTFFEQMRRVGNRSCFPTFLVQPSLFGMEEDDVVRRGPLEVVNTN---------QSKACV 144 PTF + M+R G R T + S + + R+GPL VV + + Sbjct: 24 PTFQQLMQRAGGRPDELTLIAPASARLLVASALARQGPLLVVTATGREADDLAAELRGVF 83 Query: 143 GSLVKLLPDDDAMP 102 G V LLP + +P Sbjct: 84 GDAVALLPSWETLP 97
>MFD_MYCBO (P64327) Transcription-repair coupling factor (EC 3.6.1.-) (TRCF)| (ATP-dependent helicase mfd) Length = 1234 Score = 29.3 bits (64), Expect = 9.7 Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 9/74 (12%) Frame = -3 Query: 296 PTFFEQMRRVGNRSCFPTFLVQPSLFGMEEDDVVRRGPLEVVNTN---------QSKACV 144 PTF + M+R G R T + S + + R+GPL VV + + Sbjct: 24 PTFQQLMQRAGGRPDELTLIAPASARLLVASALARQGPLLVVTATGREADDLAAELRGVF 83 Query: 143 GSLVKLLPDDDAMP 102 G V LLP + +P Sbjct: 84 GDAVALLPSWETLP 97
>ACOT8_RAT (Q8VHK0) Acyl-coenzyme A thioesterase 8 (EC 3.1.2.2) (Acyl-CoA| thioesterase 8) (Peroxisomal acyl-coenzyme A thioester hydrolase 1) (PTE-1) (Peroxisomal long-chain acyl-coA thioesterase 1) (Peroxisomal acyl-CoA thioesterase 2) (PTE-2) Length = 320 Score = 29.3 bits (64), Expect = 9.7 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 6/64 (9%) Frame = +3 Query: 426 QVPGLLHQMRFSSCSSYGIKSLLYQGHTKPLRICRLSCIQGHSQP*NHP------*PPRK 587 +VP L H R + +S+ ++++ H K + IC+ S Q P H PP + Sbjct: 92 KVPVLYHVERTRTGASFSVRAVKAVQHGKAIFICQASFQQMQPSPLQHQFSMPTVPPPEE 151 Query: 588 LEDH 599 L DH Sbjct: 152 LLDH 155
>ACOT8_MOUSE (P58137) Acyl-coenzyme A thioesterase 8 (EC 3.1.2.2) (Acyl-CoA| thioesterase 8) (Peroxisomal acyl-coenzyme A thioester hydrolase 1) (PTE-1) (Peroxisomal long-chain acyl-coA thioesterase 1) (Peroxisomal acyl-CoA thioesterase 2) (PTE-2) Length = 320 Score = 29.3 bits (64), Expect = 9.7 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 6/64 (9%) Frame = +3 Query: 426 QVPGLLHQMRFSSCSSYGIKSLLYQGHTKPLRICRLSCIQGHSQP*NHP------*PPRK 587 +VP L H R + +S+ ++++ H K + IC+ S Q P H PP Sbjct: 92 KVPVLYHVERIRTGASFSVRAVKAVQHGKAIFICQASFQQMQPSPLQHQFSMPSVPPPED 151 Query: 588 LEDH 599 L DH Sbjct: 152 LLDH 155 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 97,087,817 Number of Sequences: 219361 Number of extensions: 2116778 Number of successful extensions: 4792 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 4671 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4790 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5596027262 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
