Clone Information

BLAST Search Result

Clone Name	rbasd13h13
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_481212.1\| Oryza sativa (japonica cultivar-group), mRNA	248	1e-62
2	ref\|XM_507576.1\| PREDICTED Oryza sativa (japonica cultivar-group...	248	1e-62
3	ref\|XM_507185.2\| PREDICTED Oryza sativa (japonica cultivar-group...	248	1e-62
4	dbj\|AK104325.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	248	1e-62
5	dbj\|AK068157.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	248	1e-62
6	dbj\|AK105984.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	240	3e-60
7	gb\|AY110166.1\| Zea mays CL13480_1 mRNA sequence	222	8e-55
8	dbj\|AP008214.1\| Oryza sativa (japonica cultivar-group) genomic D...	127	3e-26
9	dbj\|AP004158.3\| Oryza sativa (japonica cultivar-group) genomic D...	127	3e-26
10	gb\|AE016825.1\| Chromobacterium violaceum ATCC 12472, complete ge...	46	0.099
11	gb\|AC124006.4\| Mus musculus BAC clone RP24-528C3 from chromosome...	42	1.5
12	gb\|AC122394.5\| Mus musculus BAC clone RP24-85N8 from 6, complete...	42	1.5
13	emb\|AL772131.5\| Mouse DNA sequence from clone RP23-472I13 on chr...	42	1.5
14	ref\|XM_880049.1\| PREDICTED: Bos taurus hypothetical protein LOC6...	40	6.1
15	ref\|XM_369659.1\| Magnaporthe grisea 70-15 chromosome III predict...	40	6.1
16	gb\|CP000115.1\| Nitrobacter winogradskyi Nb-255, complete genome	40	6.1
17	gb\|AC124753.3\| Mus musculus BAC clone RP23-284J4 from 9, complet...	40	6.1
18	gb\|AC146866.6\| Medicago truncatula clone mth2-19a14, complete se...	40	6.1
19	emb\|CR376844.12\| Zebrafish DNA sequence from clone DKEYP-51B7 in...	40	6.1
20	gb\|CP000283.1\| Rhodopseudomonas palustris BisB5, complete genome	40	6.1
21	emb\|AL161791.15\| Human DNA sequence from clone RP11-82L2 on chro...	40	6.1
22	gb\|AC157572.4\| Mus musculus BAC clone RP23-79O10 from chromosome...	40	6.1
23	gb\|AC127357.5\| Mus musculus BAC clone RP23-103P11 from chromosom...	40	6.1
24	emb\|AL162757.2\|NMA6Z2491 Neisseria meningitidis serogroup A stra...	40	6.1
25	gb\|AC159323.3\| Mus musculus BAC clone RP23-6I8 from chromosome 1...	40	6.1
26	gb\|AC018452.11\| Homo sapiens chromosome 3 BAC RP11-23D24 (Roswel...	40	6.1
27	gb\|AE002098.2\| Neisseria meningitidis MC58, complete genome	40	6.1
28	gb\|AC073120.5\| Homo sapiens BAC clone RP11-612D17 from 2, comple...	40	6.1
29	dbj\|BA000040.2\| Bradyrhizobium japonicum USDA 110 DNA, complete ...	40	6.1
30	dbj\|BA000012.4\| Mesorhizobium loti MAFF303099 DNA, complete genome	40	6.1
31	gb\|AE004969.1\| Neisseria gonorrhoeae FA 1090, complete genome	40	6.1
32	gb\|AC131658.3\| Mus musculus BAC clone RP23-239F24 from 3, comple...	40	6.1
33	emb\|CT009749.1\| Medicago truncatula chromosome 5 clone mth2-46e3...	40	6.1
34	emb\|AL627072.17\| Mouse DNA sequence from clone RP23-432B19 on ch...	40	6.1

>ref|XM_481212.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1702

 Score =  248 bits (125), Expect = 1e-62
 Identities = 248/289 (85%)
 Strand = Plus / Minus

                                                                        
Query: 113  atgtttgtgccaatgcgaagctaggagcgggctccaagtccttgactgccttcttcactg 172
            ||||||| |||||||| | ||| || |||| ||  || ||||| || |||||||| || |
Sbjct: 1439 atgtttgagccaatgcaacgcttggggcggccttgaactccttcaccgccttcttgacgg 1380

                                                                        
Query: 173  cctcgatgtcaatgccggccagcttgcctgtcgccgacgcgacaacggtgcagcttttcc 232
            |||||| ||| ||| ||  |||||| || ||| |||||||||| ||||||||||  ||| 
Sbjct: 1379 cctcgacgtcgatgtcgatcagcttcccggtctccgacgcgacgacggtgcagcccttct 1320

                                                                        
Query: 233  tctcctcgacgtatggcaggaacagcctcgccttctccttggaggagaacagcgccacac 292
            ||||||| | ||| ||||||||||||||||||||||||||||| ||||| || ||||| |
Sbjct: 1319 tctcctccaagtacggcaggaacagcctcgccttctccttggatgagaagagagccacgc 1260

                                                                        
Query: 293  atggcttgtcgcgggcgttggcgagctggaccgcggcggtgttggtcgccacgacgccgg 352
            |||||||||| | |||||||||||||||||| ||||||||||||||||| ||||||||| 
Sbjct: 1259 atggcttgtccctggcgttggcgagctggacggcggcggtgttggtcgcgacgacgccga 1200

                                                             
Query: 353  cagagtcgttgatgaggcaggtgagctgtccaggagtagtgatgaacag 401
            | ||||||||||||||||||||||| || |||||||| |||||||||||
Sbjct: 1199 cggagtcgttgatgaggcaggtgagttggccaggagtggtgatgaacag 1151

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>ref|XM_507576.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1118_F05.12 mRNA
          Length = 1751

 Score =  248 bits (125), Expect = 1e-62
 Identities = 248/289 (85%)
 Strand = Plus / Minus

                                                                        
Query: 113  atgtttgtgccaatgcgaagctaggagcgggctccaagtccttgactgccttcttcactg 172
            ||||||| |||||||| | ||| || |||| ||  || ||||| || |||||||| || |
Sbjct: 1439 atgtttgagccaatgcaacgcttggggcggccttgaactccttcaccgccttcttgacgg 1380

                                                                        
Query: 173  cctcgatgtcaatgccggccagcttgcctgtcgccgacgcgacaacggtgcagcttttcc 232
            |||||| ||| ||| ||  |||||| || ||| |||||||||| ||||||||||  ||| 
Sbjct: 1379 cctcgacgtcgatgtcgatcagcttcccggtctccgacgcgacgacggtgcagcccttct 1320

                                                                        
Query: 233  tctcctcgacgtatggcaggaacagcctcgccttctccttggaggagaacagcgccacac 292
            ||||||| | ||| ||||||||||||||||||||||||||||| ||||| || ||||| |
Sbjct: 1319 tctcctccaagtacggcaggaacagcctcgccttctccttggatgagaagagagccacgc 1260

                                                                        
Query: 293  atggcttgtcgcgggcgttggcgagctggaccgcggcggtgttggtcgccacgacgccgg 352
            |||||||||| | |||||||||||||||||| ||||||||||||||||| ||||||||| 
Sbjct: 1259 atggcttgtccctggcgttggcgagctggacggcggcggtgttggtcgcgacgacgccga 1200

                                                             
Query: 353  cagagtcgttgatgaggcaggtgagctgtccaggagtagtgatgaacag 401
            | ||||||||||||||||||||||| || |||||||| |||||||||||
Sbjct: 1199 cggagtcgttgatgaggcaggtgagttggccaggagtggtgatgaacag 1151

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>ref|XM_507185.2| PREDICTED Oryza sativa (japonica cultivar-group), OJ1118_F05.12 mRNA
          Length = 1710

 Score =  248 bits (125), Expect = 1e-62
 Identities = 248/289 (85%)
 Strand = Plus / Minus

                                                                        
Query: 113  atgtttgtgccaatgcgaagctaggagcgggctccaagtccttgactgccttcttcactg 172
            ||||||| |||||||| | ||| || |||| ||  || ||||| || |||||||| || |
Sbjct: 1443 atgtttgagccaatgcaacgcttggggcggccttgaactccttcaccgccttcttgacgg 1384

                                                                        
Query: 173  cctcgatgtcaatgccggccagcttgcctgtcgccgacgcgacaacggtgcagcttttcc 232
            |||||| ||| ||| ||  |||||| || ||| |||||||||| ||||||||||  ||| 
Sbjct: 1383 cctcgacgtcgatgtcgatcagcttcccggtctccgacgcgacgacggtgcagcccttct 1324

                                                                        
Query: 233  tctcctcgacgtatggcaggaacagcctcgccttctccttggaggagaacagcgccacac 292
            ||||||| | ||| ||||||||||||||||||||||||||||| ||||| || ||||| |
Sbjct: 1323 tctcctccaagtacggcaggaacagcctcgccttctccttggatgagaagagagccacgc 1264

                                                                        
Query: 293  atggcttgtcgcgggcgttggcgagctggaccgcggcggtgttggtcgccacgacgccgg 352
            |||||||||| | |||||||||||||||||| ||||||||||||||||| ||||||||| 
Sbjct: 1263 atggcttgtccctggcgttggcgagctggacggcggcggtgttggtcgcgacgacgccga 1204

                                                             
Query: 353  cagagtcgttgatgaggcaggtgagctgtccaggagtagtgatgaacag 401
            | ||||||||||||||||||||||| || |||||||| |||||||||||
Sbjct: 1203 cggagtcgttgatgaggcaggtgagttggccaggagtggtgatgaacag 1155

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>dbj|AK104325.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-027-H10, full
            insert sequence
          Length = 1702

 Score =  248 bits (125), Expect = 1e-62
 Identities = 248/289 (85%)
 Strand = Plus / Minus

                                                                        
Query: 113  atgtttgtgccaatgcgaagctaggagcgggctccaagtccttgactgccttcttcactg 172
            ||||||| |||||||| | ||| || |||| ||  || ||||| || |||||||| || |
Sbjct: 1439 atgtttgagccaatgcaacgcttggggcggccttgaactccttcaccgccttcttgacgg 1380

                                                                        
Query: 173  cctcgatgtcaatgccggccagcttgcctgtcgccgacgcgacaacggtgcagcttttcc 232
            |||||| ||| ||| ||  |||||| || ||| |||||||||| ||||||||||  ||| 
Sbjct: 1379 cctcgacgtcgatgtcgatcagcttcccggtctccgacgcgacgacggtgcagcccttct 1320

                                                                        
Query: 233  tctcctcgacgtatggcaggaacagcctcgccttctccttggaggagaacagcgccacac 292
            ||||||| | ||| ||||||||||||||||||||||||||||| ||||| || ||||| |
Sbjct: 1319 tctcctccaagtacggcaggaacagcctcgccttctccttggatgagaagagagccacgc 1260

                                                                        
Query: 293  atggcttgtcgcgggcgttggcgagctggaccgcggcggtgttggtcgccacgacgccgg 352
            |||||||||| | |||||||||||||||||| ||||||||||||||||| ||||||||| 
Sbjct: 1259 atggcttgtccctggcgttggcgagctggacggcggcggtgttggtcgcgacgacgccga 1200

                                                             
Query: 353  cagagtcgttgatgaggcaggtgagctgtccaggagtagtgatgaacag 401
            | ||||||||||||||||||||||| || |||||||| |||||||||||
Sbjct: 1199 cggagtcgttgatgaggcaggtgagttggccaggagtggtgatgaacag 1151

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>dbj|AK068157.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013134G12, full
            insert sequence
          Length = 1710

 Score =  248 bits (125), Expect = 1e-62
 Identities = 248/289 (85%)
 Strand = Plus / Minus

                                                                        
Query: 113  atgtttgtgccaatgcgaagctaggagcgggctccaagtccttgactgccttcttcactg 172
            ||||||| |||||||| | ||| || |||| ||  || ||||| || |||||||| || |
Sbjct: 1443 atgtttgagccaatgcaacgcttggggcggccttgaactccttcaccgccttcttgacgg 1384

                                                                        
Query: 173  cctcgatgtcaatgccggccagcttgcctgtcgccgacgcgacaacggtgcagcttttcc 232
            |||||| ||| ||| ||  |||||| || ||| |||||||||| ||||||||||  ||||
Sbjct: 1383 cctcgacgtcgatgtcgatcagcttcccggtctccgacgcgacgacggtgcagcccttcc 1324

                                                                        
Query: 233  tctcctcgacgtatggcaggaacagcctcgccttctccttggaggagaacagcgccacac 292
            ||||||| | ||| ||||||||||||||||||||||||||||| ||||| || ||||| |
Sbjct: 1323 tctcctccaagtacggcaggaacagcctcgccttctccttggatgagaagagagccacgc 1264

                                                                        
Query: 293  atggcttgtcgcgggcgttggcgagctggaccgcggcggtgttggtcgccacgacgccgg 352
            ||||| |||| | |||||||||||||||||| ||||||||||||||||| ||||||||| 
Sbjct: 1263 atggcctgtccctggcgttggcgagctggacggcggcggtgttggtcgcgacgacgccga 1204

                                                             
Query: 353  cagagtcgttgatgaggcaggtgagctgtccaggagtagtgatgaacag 401
            | ||||||||||||||||||||||| || |||||||| |||||||||||
Sbjct: 1203 cggagtcgttgatgaggcaggtgagttggccaggagtggtgatgaacag 1155

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>dbj|AK105984.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-G04, full
            insert sequence
          Length = 1751

 Score =  240 bits (121), Expect = 3e-60
 Identities = 247/289 (85%)
 Strand = Plus / Minus

                                                                        
Query: 113  atgtttgtgccaatgcgaagctaggagcgggctccaagtccttgactgccttcttcactg 172
            ||||||| |||||||| | ||| || |||| ||  || ||||| || |||||||| || |
Sbjct: 1439 atgtttgagccaatgcaacgcttggggcggccttgaactccttcaccgccttcttgacgg 1380

                                                                        
Query: 173  cctcgatgtcaatgccggccagcttgcctgtcgccgacgcgacaacggtgcagcttttcc 232
            |||||| ||| ||| ||  |||||| || ||| |||||||||| ||||||||||  ||| 
Sbjct: 1379 cctcgacgtcgatgtcgatcagcttcccggtctccgacgcgacgacggtgcagcccttct 1320

                                                                        
Query: 233  tctcctcgacgtatggcaggaacagcctcgccttctccttggaggagaacagcgccacac 292
            ||||||| | ||| ||||||||||||||||||||||||||||| ||||| || ||||| |
Sbjct: 1319 tctcctccaagtacggcaggaacagcctcgccttctccttggatgagaagagagccacgc 1260

                                                                        
Query: 293  atggcttgtcgcgggcgttggcgagctggaccgcggcggtgttggtcgccacgacgccgg 352
            |||||||||| | |||||||||||||||||| ||||||||||||||||| ||||||||| 
Sbjct: 1259 atggcttgtccctggcgttggcgagctggacggcggcggtgttggtcgcgacgacgccga 1200

                                                             
Query: 353  cagagtcgttgatgaggcaggtgagctgtccaggagtagtgatgaacag 401
            | |||||||||||| |||||||||| || |||||||| |||||||||||
Sbjct: 1199 cggagtcgttgatggggcaggtgagttggccaggagtggtgatgaacag 1151

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>gb|AY110166.1| Zea mays CL13480_1 mRNA sequence
          Length = 1343

 Score =  222 bits (112), Expect = 8e-55
 Identities = 241/284 (84%)
 Strand = Plus / Plus

                                                                       
Query: 118 tgtgccaatgcgaagctaggagcgggctccaagtccttgactgccttcttcactgcctcg 177
           ||||||||||||||||| |||||||||||||||||||| ||  | |||||||| || | |
Sbjct: 210 tgtgccaatgcgaagctgggagcgggctccaagtccttcaccacattcttcaccgcgttg 269

                                                                       
Query: 178 atgtcaatgccggccagcttgcctgtcgccgacgcgacaacggtgcagcttttcctctcc 237
           | ||| ||| ||  ||| || || |||||||| |  |  |||||||||||  || |  ||
Sbjct: 270 aggtcgatgtcgatcaggttccccgtcgccgaagatatgacggtgcagctgctcttgccc 329

                                                                       
Query: 238 tcgacgtatggcaggaacagcctcgccttctccttggaggagaacagcgccacacatggc 297
           || |||||||||||||||||||| ||||||||    || ||||||| |||||||||||||
Sbjct: 330 tccacgtatggcaggaacagccttgccttctctgccgacgagaacaacgccacacatggc 389

                                                                       
Query: 298 ttgtcgcgggcgttggcgagctggaccgcggcggtgttggtcgccacgacgccggcagag 357
           ||||||||||||||||||||||| || || ||||| |||||||| |||||||||||||||
Sbjct: 390 ttgtcgcgggcgttggcgagctgcacggcagcggtattggtcgcgacgacgccggcagag 449

                                                       
Query: 358 tcgttgatgaggcaggtgagctgtccaggagtagtgatgaacag 401
           ||||||||||||||||||||||| || || || |||||||||||
Sbjct: 450 tcgttgatgaggcaggtgagctggcctggggtggtgatgaacag 493

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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  127 bits (64), Expect = 3e-26
 Identities = 82/88 (93%)
 Strand = Plus / Minus

                                                                            
Query: 292      catggcttgtcgcgggcgttggcgagctggaccgcggcggtgttggtcgccacgacgccg 351
                ||||||||||| | |||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 10626749 catggcttgtccctggcgttggcgagctggacggcggcggtgttggtcgcgacgacgccg 10626690

                                            
Query: 352      gcagagtcgttgatgaggcaggtgagct 379
                 | |||||||||||||||||||||||||
Sbjct: 10626689 acggagtcgttgatgaggcaggtgagct 10626662



 Score =  107 bits (54), Expect = 3e-20
 Identities = 147/178 (82%)
 Strand = Plus / Minus

                                                                            
Query: 113      atgtttgtgccaatgcgaagctaggagcgggctccaagtccttgactgccttcttcactg 172
                ||||||| |||||||| | ||| || |||| ||  || ||||| || |||||||| || |
Sbjct: 10627031 atgtttgagccaatgcaacgcttggggcggccttgaactccttcaccgccttcttgacgg 10626972

                                                                            
Query: 173      cctcgatgtcaatgccggccagcttgcctgtcgccgacgcgacaacggtgcagcttttcc 232
                |||||| ||| ||| ||  |||||| || ||| |||||||||| ||||||||||  ||| 
Sbjct: 10626971 cctcgacgtcgatgtcgatcagcttcccggtctccgacgcgacgacggtgcagcccttct 10626912

                                                                          
Query: 233      tctcctcgacgtatggcaggaacagcctcgccttctccttggaggagaacagcgccac 290
                ||||||| | ||| ||||||||||||||||||||||||||||| ||||| || |||||
Sbjct: 10626911 tctcctccaagtacggcaggaacagcctcgccttctccttggatgagaagagagccac 10626854

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>dbj|AP004158.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1118_F05
          Length = 134247

 Score =  127 bits (64), Expect = 3e-26
 Identities = 82/88 (93%)
 Strand = Plus / Minus

                                                                         
Query: 292   catggcttgtcgcgggcgttggcgagctggaccgcggcggtgttggtcgccacgacgccg 351
             ||||||||||| | |||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 54389 catggcttgtccctggcgttggcgagctggacggcggcggtgttggtcgcgacgacgccg 54330

                                         
Query: 352   gcagagtcgttgatgaggcaggtgagct 379
              | |||||||||||||||||||||||||
Sbjct: 54329 acggagtcgttgatgaggcaggtgagct 54302



 Score =  107 bits (54), Expect = 3e-20
 Identities = 147/178 (82%)
 Strand = Plus / Minus

                                                                         
Query: 113   atgtttgtgccaatgcgaagctaggagcgggctccaagtccttgactgccttcttcactg 172
             ||||||| |||||||| | ||| || |||| ||  || ||||| || |||||||| || |
Sbjct: 54671 atgtttgagccaatgcaacgcttggggcggccttgaactccttcaccgccttcttgacgg 54612

                                                                         
Query: 173   cctcgatgtcaatgccggccagcttgcctgtcgccgacgcgacaacggtgcagcttttcc 232
             |||||| ||| ||| ||  |||||| || ||| |||||||||| ||||||||||  ||| 
Sbjct: 54611 cctcgacgtcgatgtcgatcagcttcccggtctccgacgcgacgacggtgcagcccttct 54552

                                                                       
Query: 233   tctcctcgacgtatggcaggaacagcctcgccttctccttggaggagaacagcgccac 290
             ||||||| | ||| ||||||||||||||||||||||||||||| ||||| || |||||
Sbjct: 54551 tctcctccaagtacggcaggaacagcctcgccttctccttggatgagaagagagccac 54494

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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 46.1 bits (23), Expect = 0.099
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                              
Query: 406     gccgtctcctcaccgacgatttcctcgatct 436
               ||||||||||| |||||||| ||||||||||
Sbjct: 4100230 gccgtctcctcgccgacgatgtcctcgatct 4100260

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>gb|AC124006.4| Mus musculus BAC clone RP24-528C3 from chromosome 6, complete sequence
          Length = 146418

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 365   tgaggcaggtgagctgtccaggagt 389
             ||||||| |||||||||||||||||
Sbjct: 92251 tgaggcatgtgagctgtccaggagt 92275

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>gb|AC122394.5| Mus musculus BAC clone RP24-85N8 from 6, complete sequence
          Length = 215914

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 365   tgaggcaggtgagctgtccaggagt 389
             ||||||| |||||||||||||||||
Sbjct: 27636 tgaggcatgtgagctgtccaggagt 27660

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>emb|AL772131.5| Mouse DNA sequence from clone RP23-472I13 on chromosome 4, complete
              sequence
          Length = 179035

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 361    ttgatgaggcaggtgagctgtccag 385
              |||||||||||| ||||||||||||
Sbjct: 111080 ttgatgaggcagctgagctgtccag 111056

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>ref|XM_880049.1| PREDICTED: Bos taurus hypothetical protein LOC615502 (LOC615502),
           mRNA
          Length = 936

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 366 gaggcaggtgagctgtccag 385
           ||||||||||||||||||||
Sbjct: 78  gaggcaggtgagctgtccag 97

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>ref|XM_369659.1| Magnaporthe grisea 70-15 chromosome III predicted protein
           (MG05805.4) partial mRNA
          Length = 738

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 314 cgagctggaccgcggcggtg 333
           ||||||||||||||||||||
Sbjct: 67  cgagctggaccgcggcggtg 48

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>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome
          Length = 3402093

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 308    cgttggcgagctggaccgcg 327
              ||||||||||||||||||||
Sbjct: 619213 cgttggcgagctggaccgcg 619232

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>gb|AC124753.3| Mus musculus BAC clone RP23-284J4 from 9, complete sequence
          Length = 177378

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 422   cgatttcctcgatctcttct 441
             ||||||||||||||||||||
Sbjct: 65597 cgatttcctcgatctcttct 65578

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>gb|AC146866.6| Medicago truncatula clone mth2-19a14, complete sequence
          Length = 145002

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 102    tgattttgattatgtttgtg 121
              ||||||||||||||||||||
Sbjct: 133271 tgattttgattatgtttgtg 133252

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>emb|CR376844.12| Zebrafish DNA sequence from clone DKEYP-51B7 in linkage group 8,
             complete sequence
          Length = 203472

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Minus

                                         
Query: 33    ctcttggtca-catttgttggtcagatg 59
             |||||||||| |||||||||||||||||
Sbjct: 43761 ctcttggtcagcatttgttggtcagatg 43734

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>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 300     gtcgcgggcgttggcgagct 319
               ||||||||||||||||||||
Sbjct: 4842546 gtcgcgggcgttggcgagct 4842527

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>emb|AL161791.15| Human DNA sequence from clone RP11-82L2 on chromosome 9 Contains the 5'
             end of the SMC2L1 gene for SMC2 structural maintenance of
             chromosomes 2-like 1 (yeast) (CAPE, CAP-E, hCAP-E) and a
             CpG island, complete sequence
          Length = 108821

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 361   ttgatgaggcaggtgagctg 380
             ||||||||||||||||||||
Sbjct: 64022 ttgatgaggcaggtgagctg 64041

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>gb|AC157572.4| Mus musculus BAC clone RP23-79O10 from chromosome 14, complete sequence
          Length = 242759

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 61    gcttgcttttcatgtctata 80
             ||||||||||||||||||||
Sbjct: 49874 gcttgcttttcatgtctata 49893

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>gb|AC127357.5| Mus musculus BAC clone RP23-103P11 from chromosome 3, complete sequence
          Length = 220032

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 366    gaggcaggtgagctgtccag 385
              ||||||||||||||||||||
Sbjct: 159761 gaggcaggtgagctgtccag 159742

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>emb|AL162757.2|NMA6Z2491 Neisseria meningitidis serogroup A strain Z2491 complete genome;
             segment 6/7
          Length = 326301

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 91    aatggagacgatgattttga 110
             ||||||||||||||||||||
Sbjct: 33203 aatggagacgatgattttga 33184

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>gb|AC159323.3| Mus musculus BAC clone RP23-6I8 from chromosome 14, complete sequence
          Length = 223640

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 61    gcttgcttttcatgtctata 80
             ||||||||||||||||||||
Sbjct: 88033 gcttgcttttcatgtctata 88014

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>gb|AC018452.11| Homo sapiens chromosome 3 BAC RP11-23D24 (Roswell Park Cancer Institute
              Human BAC Library) complete sequence
          Length = 171523

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 60     agcttgcttttcatgtctat 79
              ||||||||||||||||||||
Sbjct: 136623 agcttgcttttcatgtctat 136642

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>gb|AE002098.2| Neisseria meningitidis MC58, complete genome
          Length = 2272360

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 91      aatggagacgatgattttga 110
               ||||||||||||||||||||
Sbjct: 1623583 aatggagacgatgattttga 1623564

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>gb|AC073120.5| Homo sapiens BAC clone RP11-612D17 from 2, complete sequence
          Length = 43877

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 377  gctgtccaggagtagtgatgaaca 400
            ||||| ||||||||||||||||||
Sbjct: 2649 gctgtgcaggagtagtgatgaaca 2626

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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 159     tgccttcttcactgcctcgatgtc 182
               |||||||||||| |||||||||||
Sbjct: 1211703 tgccttcttcacggcctcgatgtc 1211680

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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 180     gtcaatgccggccagcttgc 199
               ||||||||||||||||||||
Sbjct: 5024453 gtcaatgccggccagcttgc 5024434

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>gb|AE004969.1| Neisseria gonorrhoeae FA 1090, complete genome
          Length = 2153922

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 91      aatggagacgatgattttga 110
               ||||||||||||||||||||
Sbjct: 1171933 aatggagacgatgattttga 1171914

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>gb|AC131658.3| Mus musculus BAC clone RP23-239F24 from 3, complete sequence
          Length = 200955

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 366   gaggcaggtgagctgtccag 385
             ||||||||||||||||||||
Sbjct: 42289 gaggcaggtgagctgtccag 42270

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>emb|CT009749.1| Medicago truncatula chromosome 5 clone mth2-46e3, COMPLETE SEQUENCE
          Length = 138861

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 102  tgattttgattatgtttgtg 121
            ||||||||||||||||||||
Sbjct: 3710 tgattttgattatgtttgtg 3691

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>emb|AL627072.17| Mouse DNA sequence from clone RP23-432B19 on chromosome 4, complete
             sequence
          Length = 208805

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 141   gggctccaagtccttgactg 160
             ||||||||||||||||||||
Sbjct: 69120 gggctccaagtccttgactg 69139


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,626,214
Number of Sequences: 3902068
Number of extensions: 3626214
Number of successful extensions: 74432
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 74098
Number of HSP's gapped (non-prelim): 334
length of query: 454
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 432
effective length of database: 17,147,199,772
effective search space: 7407590301504
effective search space used: 7407590301504
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result