ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd13g19
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_482519.1| Oryza sativa (japonica cultivar-group), mRNA 369 8e-99
2ref|XM_507237.1| PREDICTED Oryza sativa (japonica cultivar-group... 369 8e-99
3dbj|AK101681.1| Oryza sativa (japonica cultivar-group) cDNA clon... 369 8e-99
4dbj|AK102785.1| Oryza sativa (japonica cultivar-group) cDNA clon... 361 2e-96
5gb|AY109250.1| Zea mays PCO087848 mRNA sequence 212 1e-51
6dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 103 7e-19
7dbj|AP003881.3| Oryza sativa (japonica cultivar-group) genomic D... 103 7e-19
8ref|NM_121609.2| Arabidopsis thaliana Ran GTPase binding / chrom... 82 3e-12
9emb|BX830402.1|CNS0A1C5 Arabidopsis thaliana Full-length cDNA Co... 82 3e-12
10gb|AY085145.1| Arabidopsis thaliana clone 13316 mRNA, complete s... 82 3e-12
11ref|NM_111118.3| Arabidopsis thaliana Ran GTPase binding / chrom... 66 2e-07
12ref|NM_001035546.1| Arabidopsis thaliana Ran GTPase binding / ch... 62 2e-06
13emb|BX823346.1|CNS0A6KE Arabidopsis thaliana Full-length cDNA Co... 62 2e-06
14emb|BX824696.1|CNS0A6SX Arabidopsis thaliana Full-length cDNA Co... 60 9e-06
15gb|DQ415920.1| Cleome spinosa clone BAC Cs3, complete sequence 58 4e-05
16emb|AL391145.1|ATF1N13 Arabidopsis thaliana DNA chromosome 5, BA... 52 0.002
17emb|BX822851.1|CNS0A7AJ Arabidopsis thaliana Full-length cDNA Co... 52 0.002
18gb|AC021640.7|ATAC021640 Arabidopsis thaliana chromosome III BAC... 48 0.035
19ref|XM_948911.1| Theileria annulata strain Ankara hypothetical p... 42 2.2
20emb|AL663045.7| Mouse DNA sequence from clone RP23-219K7 on chro... 42 2.2
21gb|AC105918.5| Homo sapiens BAC clone RP11-395M19 from 4, comple... 42 2.2
22emb|BX569800.8| Zebrafish DNA sequence from clone DKEY-106C24 in... 42 2.2
23dbj|AP008934.1| Staphylococcus saprophyticus subsp. saprophyticu... 42 2.2
24gb|AC027016.4|AC027016 Homo sapiens chromosome 11, clone RP11-43... 42 2.2
25emb|AL953866.5| Zebrafish DNA sequence from clone DKEY-60I9 in l... 42 2.2
26emb|AL603864.8| Mouse DNA sequence from clone RP23-478N15 on chr... 42 2.2
27ref|XM_525332.1| PREDICTED: Pan troglodytes LOC469948 (LOC469948... 40 8.6
28gb|AC183296.3| Pan troglodytes BAC clone CH251-352A17 from chrom... 40 8.6
29ref|NM_020433.4| Homo sapiens junctophilin 2 (JPH2), transcript ... 40 8.6
30gb|AC148481.9| Medicago truncatula clone mth2-36d21, complete se... 40 8.6
31emb|AL683842.11| Human DNA sequence from clone RP11-47G11 on chr... 40 8.6
32emb|AL034419.22|HS1108D11 Human DNA sequence from clone RP5-1108... 40 8.6
33gb|AC095281.6| Rattus norvegicus 4 BAC CH230-10M16 (Children's H... 40 8.6
34gb|BC043206.2| Homo sapiens junctophilin 2, mRNA (cDNA clone IMA... 40 8.6
35gb|AC064801.10| Homo sapiens chromosome 18, clone RP11-120K19, c... 40 8.6
36gb|AC093240.2| Homo sapiens chromosome 5 clone RP11-103P4, compl... 40 8.6
37gb|AC010389.8| Homo sapiens chromosome 5 clone CTD-2077I5, compl... 40 8.6
38emb|CT573073.1| Kuenenia stuttgartiensis genome fragment KUST_C ... 40 8.6
39gb|AC133943.3| Mus musculus BAC clone RP24-104D12 from 3, comple... 40 8.6 
>ref|XM_482519.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1454

 Score =  369 bits (186), Expect = 8e-99
 Identities = 342/394 (86%)
 Strand = Plus / Minus

                                                                        
Query: 240  atgggcacttccattgggtgacccgtagtcaccttcctaccgtcgcctagacggccatga 299
            ||||| |||||||| ||||| ||||| || |||||||| |||| ||| ||||||||||| 
Sbjct: 1192 atggggacttccatcgggtggcccgtcgtgaccttcctgccgtagcccagacggccatgg 1133

                                                                        
Query: 300  tcgcccctcccgtaagagaatatccggccgtcactggttagcacaactgaatgggtccct 359
            || || || |||||||| || || || || ||||  |||||| ||||||||||||| |||
Sbjct: 1132 tcacctctaccgtaagaaaacattcgtccatcacgagttagcgcaactgaatgggttcct 1073

                                                                        
Query: 360  ccacatgatacctgaacaatatcctctccagctagaagctgaacctgtagtggcaccatg 419
            |||||||||||||||| ||||||||||||||| ||||||| ||||| | | || ||||||
Sbjct: 1072 ccacatgatacctgaataatatcctctccagcaagaagctcaaccttttggggaaccatg 1013

                                                                        
Query: 420  tggctgctcttatcatccccaaagccgagcctcccatgttctcctcttccccaagcatat 479
            || || || |||||||| ||||| || ||||||||||| |||||||| ||||||||||| 
Sbjct: 1012 tgactacttttatcatctccaaatccaagcctcccatgctctcctctcccccaagcatac 953

                                                                        
Query: 480  acctctccttctttagttaatgcggctgaatgccaacctccagcagcaatgtcaaccaat 539
            |||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 952  acctctccctctttagttaatgcagttgaatgccaacctccagcagcaatgtcaaccaat 893

                                                                        
Query: 540  gaaaggttagatagcccttcaacacggattggttgtgatctcggttgggtatctccaatc 599
            ||||||| |||||  |||||||||||||||||||| ||||| ||||| ||||||||| | 
Sbjct: 892  gaaaggtcagataatccttcaacacggattggttgcgatcttggttgagtatctccagtg 833

                                              
Query: 600  cccagctggccatattcattattaccccatgccc 633
            ||||| || ||||| ||||| |||||||||||||
Sbjct: 832  cccagttgaccatactcattgttaccccatgccc 799
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>ref|XM_507237.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1124_B05.9 mRNA
          Length = 1643

 Score =  369 bits (186), Expect = 8e-99
 Identities = 342/394 (86%)
 Strand = Plus / Minus

                                                                        
Query: 240  atgggcacttccattgggtgacccgtagtcaccttcctaccgtcgcctagacggccatga 299
            ||||| |||||||| ||||| ||||| || |||||||| |||| ||| ||||||||||| 
Sbjct: 1145 atggggacttccatcgggtggcccgtcgtgaccttcctgccgtagcccagacggccatgg 1086

                                                                        
Query: 300  tcgcccctcccgtaagagaatatccggccgtcactggttagcacaactgaatgggtccct 359
            || || || |||||||| || || || || ||||  |||||| ||||||||||||| |||
Sbjct: 1085 tcacctctaccgtaagaaaacattcgtccatcacgagttagcgcaactgaatgggttcct 1026

                                                                        
Query: 360  ccacatgatacctgaacaatatcctctccagctagaagctgaacctgtagtggcaccatg 419
            |||||||||||||||| ||||||||||||||| ||||||| ||||| | | || ||||||
Sbjct: 1025 ccacatgatacctgaataatatcctctccagcaagaagctcaaccttttggggaaccatg 966

                                                                        
Query: 420  tggctgctcttatcatccccaaagccgagcctcccatgttctcctcttccccaagcatat 479
            || || || |||||||| ||||| || ||||||||||| |||||||| ||||||||||| 
Sbjct: 965  tgactacttttatcatctccaaatccaagcctcccatgctctcctctcccccaagcatac 906

                                                                        
Query: 480  acctctccttctttagttaatgcggctgaatgccaacctccagcagcaatgtcaaccaat 539
            |||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 905  acctctccctctttagttaatgcagttgaatgccaacctccagcagcaatgtcaaccaat 846

                                                                        
Query: 540  gaaaggttagatagcccttcaacacggattggttgtgatctcggttgggtatctccaatc 599
            ||||||| |||||  |||||||||||||||||||| ||||| ||||| ||||||||| | 
Sbjct: 845  gaaaggtcagataatccttcaacacggattggttgcgatcttggttgagtatctccagtg 786

                                              
Query: 600  cccagctggccatattcattattaccccatgccc 633
            ||||| || ||||| ||||| |||||||||||||
Sbjct: 785  cccagttgaccatactcattgttaccccatgccc 752
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>dbj|AK101681.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033058K22, full
            insert sequence
          Length = 1643

 Score =  369 bits (186), Expect = 8e-99
 Identities = 342/394 (86%)
 Strand = Plus / Minus

                                                                        
Query: 240  atgggcacttccattgggtgacccgtagtcaccttcctaccgtcgcctagacggccatga 299
            ||||| |||||||| ||||| ||||| || |||||||| |||| ||| ||||||||||| 
Sbjct: 1145 atggggacttccatcgggtggcccgtcgtgaccttcctgccgtagcccagacggccatgg 1086

                                                                        
Query: 300  tcgcccctcccgtaagagaatatccggccgtcactggttagcacaactgaatgggtccct 359
            || || || |||||||| || || || || ||||  |||||| ||||||||||||| |||
Sbjct: 1085 tcacctctaccgtaagaaaacattcgtccatcacgagttagcgcaactgaatgggttcct 1026

                                                                        
Query: 360  ccacatgatacctgaacaatatcctctccagctagaagctgaacctgtagtggcaccatg 419
            |||||||||||||||| ||||||||||||||| ||||||| ||||| | | || ||||||
Sbjct: 1025 ccacatgatacctgaataatatcctctccagcaagaagctcaaccttttggggaaccatg 966

                                                                        
Query: 420  tggctgctcttatcatccccaaagccgagcctcccatgttctcctcttccccaagcatat 479
            || || || |||||||| ||||| || ||||||||||| |||||||| ||||||||||| 
Sbjct: 965  tgactacttttatcatctccaaatccaagcctcccatgctctcctctcccccaagcatac 906

                                                                        
Query: 480  acctctccttctttagttaatgcggctgaatgccaacctccagcagcaatgtcaaccaat 539
            |||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 905  acctctccctctttagttaatgcagttgaatgccaacctccagcagcaatgtcaaccaat 846

                                                                        
Query: 540  gaaaggttagatagcccttcaacacggattggttgtgatctcggttgggtatctccaatc 599
            ||||||| |||||  |||||||||||||||||||| ||||| ||||| ||||||||| | 
Sbjct: 845  gaaaggtcagataatccttcaacacggattggttgcgatcttggttgagtatctccagtg 786

                                              
Query: 600  cccagctggccatattcattattaccccatgccc 633
            ||||| || ||||| ||||| |||||||||||||
Sbjct: 785  cccagttgaccatactcattgttaccccatgccc 752
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>dbj|AK102785.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033107K23, full
            insert sequence
          Length = 1454

 Score =  361 bits (182), Expect = 2e-96
 Identities = 341/394 (86%)
 Strand = Plus / Minus

                                                                        
Query: 240  atgggcacttccattgggtgacccgtagtcaccttcctaccgtcgcctagacggccatga 299
            ||||| |||||||| ||||| ||||| || |||||||| |||| ||| ||||||||||| 
Sbjct: 1192 atggggacttccatcgggtggcccgtcgtgaccttcctgccgtagcccagacggccatgg 1133

                                                                        
Query: 300  tcgcccctcccgtaagagaatatccggccgtcactggttagcacaactgaatgggtccct 359
            || || || |||||||| || || || || ||||  |||||| ||||||||||||| |||
Sbjct: 1132 tcacctctaccgtaagaaaacattcgtccatcacgagttagcgcaactgaatgggttcct 1073

                                                                        
Query: 360  ccacatgatacctgaacaatatcctctccagctagaagctgaacctgtagtggcaccatg 419
            ||||| |||||||||| ||||||||||||||| ||||||| ||||| | | || ||||||
Sbjct: 1072 ccacacgatacctgaataatatcctctccagcaagaagctcaaccttttggggaaccatg 1013

                                                                        
Query: 420  tggctgctcttatcatccccaaagccgagcctcccatgttctcctcttccccaagcatat 479
            || || || |||||||| ||||| || ||||||||||| |||||||| ||||||||||| 
Sbjct: 1012 tgactacttttatcatctccaaatccaagcctcccatgctctcctctcccccaagcatac 953

                                                                        
Query: 480  acctctccttctttagttaatgcggctgaatgccaacctccagcagcaatgtcaaccaat 539
            |||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 952  acctctccctctttagttaatgcagttgaatgccaacctccagcagcaatgtcaaccaat 893

                                                                        
Query: 540  gaaaggttagatagcccttcaacacggattggttgtgatctcggttgggtatctccaatc 599
            ||||||| |||||  |||||||||||||||||||| ||||| ||||| ||||||||| | 
Sbjct: 892  gaaaggtcagataatccttcaacacggattggttgcgatcttggttgagtatctccagtg 833

                                              
Query: 600  cccagctggccatattcattattaccccatgccc 633
            ||||| || ||||| ||||| |||||||||||||
Sbjct: 832  cccagttgaccatactcattgttaccccatgccc 799
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>gb|AY109250.1| Zea mays PCO087848 mRNA sequence
          Length = 677

 Score =  212 bits (107), Expect = 1e-51
 Identities = 182/207 (87%)
 Strand = Plus / Minus

                                                                       
Query: 228 ggcggcaagtttatgggcacttccattgggtgacccgtagtcaccttcctaccgtcgcct 287
           ||||||| ||| ||||||| |||||| ||||| ||||| ||||||||||| |||| ||||
Sbjct: 218 ggcggcaggttgatgggcaattccatggggtggcccgtcgtcaccttcctgccgtagcct 159

                                                                       
Query: 288 agacggccatgatcgcccctcccgtaagagaatatccggccgtcactggttagcacaact 347
           ||||||||||| ||||||||||||||||| || || ||||| || |  | |||| |||||
Sbjct: 158 agacggccatggtcgcccctcccgtaagaaaacattcggccatctcgagctagcgcaact 99

                                                                       
Query: 348 gaatgggtccctccacatgatacctgaacaatatcctctccagctagaagctgaacctgt 407
           ||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct: 98  gaatgtgttcctccacatgatacctgaacaatatcctctccagctagaagctcaaccttt 39

                                      
Query: 408 agtggcaccatgtggctgctcttatca 434
           || ||||||||||| || |||||||||
Sbjct: 38  aggggcaccatgtgactactcttatca 12
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  103 bits (52), Expect = 7e-19
 Identities = 88/100 (88%)
 Strand = Plus / Plus

                                                                            
Query: 534      accaatgaaaggttagatagcccttcaacacggattggttgtgatctcggttgggtatct 593
                ||||||||||||| |||||  |||||||||||||||||||| ||||| ||||| ||||||
Sbjct: 20815729 accaatgaaaggtcagataatccttcaacacggattggttgcgatcttggttgagtatct 20815788

                                                        
Query: 594      ccaatccccagctggccatattcattattaccccatgccc 633
                ||| | ||||| || ||||| ||||| |||||||||||||
Sbjct: 20815789 ccagtgcccagttgaccatactcattgttaccccatgccc 20815828



 Score =  103 bits (52), Expect = 7e-19
 Identities = 100/116 (86%)
 Strand = Plus / Plus

                                                                            
Query: 368      tacctgaacaatatcctctccagctagaagctgaacctgtagtggcaccatgtggctgct 427
                |||||||| ||||||||||||||| ||||||| ||||| | | || |||||||| || ||
Sbjct: 20815044 tacctgaataatatcctctccagcaagaagctcaaccttttggggaaccatgtgactact 20815103

                                                                        
Query: 428      cttatcatccccaaagccgagcctcccatgttctcctcttccccaagcatatacct 483
                 |||||||| ||||| || ||||||||||| |||||||| ||||||||||| ||||
Sbjct: 20815104 tttatcatctccaaatccaagcctcccatgctctcctctcccccaagcatacacct 20815159



 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 56/59 (94%)
 Strand = Plus / Plus

                                                                           
Query: 478      atacctctccttctttagttaatgcggctgaatgccaacctccagcagcaatgtcaacc 536
                |||||||||| |||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct: 20815287 atacctctccctctttagttaatgcagttgaatgccaacctccagcagcaatgtcaacc 20815345



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 36/38 (94%)
 Strand = Plus / Plus

                                                      
Query: 336      gttagcacaactgaatgggtccctccacatgatacctg 373
                |||||| ||||||||||||| |||||||||||||||||
Sbjct: 20814931 gttagcgcaactgaatgggttcctccacatgatacctg 20814968



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 51/59 (86%)
 Strand = Plus / Plus

                                                                           
Query: 240      atgggcacttccattgggtgacccgtagtcaccttcctaccgtcgcctagacggccatg 298
                ||||| |||||||| ||||| ||||| || |||||||| |||| ||| |||||||||||
Sbjct: 20814195 atggggacttccatcgggtggcccgtcgtgaccttcctgccgtagcccagacggccatg 20814253
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>dbj|AP003881.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1124_B05
          Length = 109917

 Score =  103 bits (52), Expect = 7e-19
 Identities = 88/100 (88%)
 Strand = Plus / Plus

                                                                         
Query: 534   accaatgaaaggttagatagcccttcaacacggattggttgtgatctcggttgggtatct 593
             ||||||||||||| |||||  |||||||||||||||||||| ||||| ||||| ||||||
Sbjct: 46862 accaatgaaaggtcagataatccttcaacacggattggttgcgatcttggttgagtatct 46921

                                                     
Query: 594   ccaatccccagctggccatattcattattaccccatgccc 633
             ||| | ||||| || ||||| ||||| |||||||||||||
Sbjct: 46922 ccagtgcccagttgaccatactcattgttaccccatgccc 46961



 Score =  103 bits (52), Expect = 7e-19
 Identities = 100/116 (86%)
 Strand = Plus / Plus

                                                                         
Query: 368   tacctgaacaatatcctctccagctagaagctgaacctgtagtggcaccatgtggctgct 427
             |||||||| ||||||||||||||| ||||||| ||||| | | || |||||||| || ||
Sbjct: 46177 tacctgaataatatcctctccagcaagaagctcaaccttttggggaaccatgtgactact 46236

                                                                     
Query: 428   cttatcatccccaaagccgagcctcccatgttctcctcttccccaagcatatacct 483
              |||||||| ||||| || ||||||||||| |||||||| ||||||||||| ||||
Sbjct: 46237 tttatcatctccaaatccaagcctcccatgctctcctctcccccaagcatacacct 46292



 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 56/59 (94%)
 Strand = Plus / Plus

                                                                        
Query: 478   atacctctccttctttagttaatgcggctgaatgccaacctccagcagcaatgtcaacc 536
             |||||||||| |||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct: 46420 atacctctccctctttagttaatgcagttgaatgccaacctccagcagcaatgtcaacc 46478



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 36/38 (94%)
 Strand = Plus / Plus

                                                   
Query: 336   gttagcacaactgaatgggtccctccacatgatacctg 373
             |||||| ||||||||||||| |||||||||||||||||
Sbjct: 46064 gttagcgcaactgaatgggttcctccacatgatacctg 46101



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 51/59 (86%)
 Strand = Plus / Plus

                                                                        
Query: 240   atgggcacttccattgggtgacccgtagtcaccttcctaccgtcgcctagacggccatg 298
             ||||| |||||||| ||||| ||||| || |||||||| |||| ||| |||||||||||
Sbjct: 45328 atggggacttccatcgggtggcccgtcgtgaccttcctgccgtagcccagacggccatg 45386
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>ref|NM_121609.2| Arabidopsis thaliana Ran GTPase binding / chromatin binding
           AT5G16040 mRNA, complete cds
          Length = 1745

 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 86/101 (85%)
 Strand = Plus / Minus

                                                                       
Query: 438 ccaaagccgagcctcccatgttctcctcttccccaagcatatacctctccttctttagtt 497
           ||||| |||||||| ||||| ||||||||||||||| |||| ||||||||||| || |||
Sbjct: 867 ccaaacccgagccttccatgctctcctcttccccaaccataaacctctccttcattggtt 808

                                                    
Query: 498 aatgcggctgaatgccaacctccagcagcaatgtcaaccaa 538
           || || | ||||||||| || || ||||| || ||||||||
Sbjct: 807 aaagctgttgaatgccatccacccgcagcgatatcaaccaa 767



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 50/58 (86%)
 Strand = Plus / Minus

                                                                     
Query: 576 gatctcggttgggtatctccaatccccagctggccatattcattattaccccatgccc 633
           ||||||||||| || |||||| | || || || |||||||||||||||||||| ||||
Sbjct: 729 gatctcggttgtgtgtctccagttccaagttgtccatattcattattaccccaagccc 672
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>emb|BX830402.1|CNS0A1C5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB78ZE02 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1348

 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 86/101 (85%)
 Strand = Plus / Minus

                                                                       
Query: 438 ccaaagccgagcctcccatgttctcctcttccccaagcatatacctctccttctttagtt 497
           ||||| |||||||| ||||| ||||||||||||||| |||| ||||||||||| || |||
Sbjct: 849 ccaaacccgagccttccatgctctcctcttccccaaccataaacctctccttcattggtt 790

                                                    
Query: 498 aatgcggctgaatgccaacctccagcagcaatgtcaaccaa 538
           || || | ||||||||| || || ||||| || ||||||||
Sbjct: 789 aaagctgttgaatgccatccacccgcagcgatatcaaccaa 749
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>gb|AY085145.1| Arabidopsis thaliana clone 13316 mRNA, complete sequence
          Length = 1389

 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 86/101 (85%)
 Strand = Plus / Minus

                                                                       
Query: 438 ccaaagccgagcctcccatgttctcctcttccccaagcatatacctctccttctttagtt 497
           ||||| |||||||| ||||| ||||||||||||||| |||| ||||||||||| || |||
Sbjct: 867 ccaaacccgagccttccatgctctcctcttccccaaccatacacctctccttcattggtt 808

                                                    
Query: 498 aatgcggctgaatgccaacctccagcagcaatgtcaaccaa 538
           || || | ||||||||| || || ||||| || ||||||||
Sbjct: 807 aaagctgttgaatgccatccacccgcagcgatatcaaccaa 767



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 50/58 (86%)
 Strand = Plus / Minus

                                                                     
Query: 576 gatctcggttgggtatctccaatccccagctggccatattcattattaccccatgccc 633
           ||||||||||| || |||||| | || || || |||||||||||||||||||| ||||
Sbjct: 729 gatctcggttgtgtgtctccagttccaagttgtccatattcattattaccccaagccc 672
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>ref|NM_111118.3| Arabidopsis thaliana Ran GTPase binding / chromatin binding AT3G02510
            transcript variant AT3G02510.1 mRNA, complete cds
          Length = 1554

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 158/199 (79%), Gaps = 3/199 (1%)
 Strand = Plus / Minus

                                                                        
Query: 343  caactgaatgggtccctccacatgatacctgaacaatatcctctccagctagaagctgaa 402
            |||||||||| || || ||||| || |||||||  ||||| ||| |||||||||| | ||
Sbjct: 1026 caactgaatgtgttccgccacaagaaacctgaattatatcttcttcagctagaagattaa 967

                                                                        
Query: 403  cctgtagtggcaccatgtggctgctcttatcat---ccccaaagccgagcctcccatgtt 459
            | |   |||| ||||| | ||||||||| ||||   | ||||  ||||| || |||||||
Sbjct: 966  ctttctgtggaaccattttgctgctcttgtcattgtcaccaagcccgagtcttccatgtt 907

                                                                        
Query: 460  ctcctcttccccaagcatatacctctccttctttagttaatgcggctgaatgccaacctc 519
            |||||||||||||| |||| ||||||||||  | |||||  || | ||||||||| || |
Sbjct: 906  ctcctcttccccaaccatacacctctcctttatcagttagagccgttgaatgccatccac 847

                               
Query: 520  cagcagcaatgtcaaccaa 538
            | |||||||| || |||||
Sbjct: 846  ccgcagcaatatcgaccaa 828
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>ref|NM_001035546.1| Arabidopsis thaliana Ran GTPase binding / chromatin binding
           AT3G02510 transcript variant AT3G02510.2 mRNA, complete
           cds
          Length = 1727

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 79/95 (83%)
 Strand = Plus / Minus

                                                                       
Query: 444 ccgagcctcccatgttctcctcttccccaagcatatacctctccttctttagttaatgcg 503
           ||||| || ||||||||||||||||||||| |||| ||||||||||  | |||||  || 
Sbjct: 937 ccgagtcttccatgttctcctcttccccaaccatacacctctcctttatcagttagagcc 878

                                              
Query: 504 gctgaatgccaacctccagcagcaatgtcaaccaa 538
           | ||||||||| || || |||||||| || |||||
Sbjct: 877 gttgaatgccatccacccgcagcaatatcgaccaa 843
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>emb|BX823346.1|CNS0A6KE Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS25ZD09 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1445

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 79/95 (83%)
 Strand = Plus / Minus

                                                                       
Query: 444 ccgagcctcccatgttctcctcttccccaagcatatacctctccttctttagttaatgcg 503
           ||||| || ||||||||||||||||||||| |||| ||||||||||  | |||||  || 
Sbjct: 843 ccgagtcttccatgttctcctcttccccaaccatacacctctcctttatcagttagagcc 784

                                              
Query: 504 gctgaatgccaacctccagcagcaatgtcaaccaa 538
           | ||||||||| || || |||||||| || |||||
Sbjct: 783 gttgaatgccatccacccgcagcaatatcgaccaa 749
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>emb|BX824696.1|CNS0A6SX Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH65ZB02 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1457

 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 72/86 (83%)
 Strand = Plus / Minus

                                                                       
Query: 453 ccatgttctcctcttccccaagcatatacctctccttctttagttaatgcggctgaatgc 512
           ||||||||||||||||||||| |||| ||||||||||  | |||||  || | |||||||
Sbjct: 913 ccatgttctcctcttccccaaccatacacctctcctttatcagttagagccgttgaatgc 854

                                     
Query: 513 caacctccagcagcaatgtcaaccaa 538
           || || || |||||||| || |||||
Sbjct: 853 catccacccgcagcaatatcgaccaa 828
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>gb|DQ415920.1| Cleome spinosa clone BAC Cs3, complete sequence
          Length = 141360

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 44/49 (89%)
 Strand = Plus / Plus

                                                               
Query: 435    tccccaaagccgagcctcccatgttctcctcttccccaagcatatacct 483
              |||||||| ||||||||||||||||| ||||| |||||| |||| ||||
Sbjct: 125400 tccccaaacccgagcctcccatgttcccctctcccccaaccatacacct 125448



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                         
Query: 510    tgccaacctccagcagcaatgtcaacc 536
              ||||| |||||||||||||||||||||
Sbjct: 125885 tgccatcctccagcagcaatgtcaacc 125911
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>emb|AL391145.1|ATF1N13 Arabidopsis thaliana DNA chromosome 5, BAC clone F1N13 (ESSA project)
          Length = 74687

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 50/58 (86%)
 Strand = Plus / Plus

                                                                       
Query: 576   gatctcggttgggtatctccaatccccagctggccatattcattattaccccatgccc 633
             ||||||||||| || |||||| | || || || |||||||||||||||||||| ||||
Sbjct: 60476 gatctcggttgtgtgtctccagttccaagttgtccatattcattattaccccaagccc 60533



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 41/46 (89%)
 Strand = Plus / Plus

                                                           
Query: 438   ccaaagccgagcctcccatgttctcctcttccccaagcatatacct 483
             ||||| |||||||| ||||| ||||||||||||||| |||| ||||
Sbjct: 60077 ccaaacccgagccttccatgctctcctcttccccaaccataaacct 60122
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>emb|BX822851.1|CNS0A7AJ Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB69ZB10 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1333

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 71/86 (82%)
 Strand = Plus / Minus

                                                                       
Query: 453 ccatgttctcctcttccccaagcatatacctctccttctttagttaatgcggctgaatgc 512
           ||||||||||||||||||||| |||| |||||| |||  | |||||  || | |||||||
Sbjct: 867 ccatgttctcctcttccccaaccatacacctcttctttatcagttagagccgttgaatgc 808

                                     
Query: 513 caacctccagcagcaatgtcaaccaa 538
           || || || |||||||| || |||||
Sbjct: 807 catccacccgcagcaatatcgaccaa 782
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>gb|AC021640.7|ATAC021640 Arabidopsis thaliana chromosome III BAC F16B3 genomic sequence,
             complete sequence
          Length = 103904

 Score = 48.1 bits (24), Expect = 0.035
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                     
Query: 444   ccgagcctcccatgttctcctcttccccaagcatatacct 483
             ||||| || ||||||||||||||||||||| |||| ||||
Sbjct: 38256 ccgagtcttccatgttctcctcttccccaaccatacacct 38295
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>ref|XM_948911.1| Theileria annulata strain Ankara hypothetical protein (TA06955)
           partial mRNA
          Length = 1653

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 211 tggtgctggtctttggtggcg 231
           |||||||||||||||||||||
Sbjct: 317 tggtgctggtctttggtggcg 297
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>emb|AL663045.7| Mouse DNA sequence from clone RP23-219K7 on chromosome 11 Contains the
             Elac2 gene for elaC homolog 2 (E. coli), a novel gene, a
             peroxiredoxin 6 (Prdx6) pseudogene, a novel gene
             (1700086D15Rik), a novel pseudogene, and two CpG islands,
             complete sequence
          Length = 196566

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 206   ggagctggtgctggtctttggtggc 230
             |||||||||||||||| ||||||||
Sbjct: 58151 ggagctggtgctggtcattggtggc 58175
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>gb|AC105918.5| Homo sapiens BAC clone RP11-395M19 from 4, complete sequence
          Length = 53838

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 397   gctgaacctgtagtggcacca 417
             |||||||||||||||||||||
Sbjct: 44111 gctgaacctgtagtggcacca 44131
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>emb|BX569800.8| Zebrafish DNA sequence from clone DKEY-106C24 in linkage group 21,
             complete sequence
          Length = 188915

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 91    cacaatttcatttcatacact 111
             |||||||||||||||||||||
Sbjct: 97255 cacaatttcatttcatacact 97235
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>dbj|AP008934.1| Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 DNA,
              complete genome
          Length = 2516575

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 83     actgttaccacaatttcattt 103
              |||||||||||||||||||||
Sbjct: 983135 actgttaccacaatttcattt 983155
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>gb|AC027016.4|AC027016 Homo sapiens chromosome 11, clone RP11-439M19, complete sequence
          Length = 165843

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 588   gtatctccaatccccagctgg 608
             |||||||||||||||||||||
Sbjct: 71611 gtatctccaatccccagctgg 71631
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>emb|AL953866.5| Zebrafish DNA sequence from clone DKEY-60I9 in linkage group 21,
             complete sequence
          Length = 198925

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 91    cacaatttcatttcatacact 111
             |||||||||||||||||||||
Sbjct: 87939 cacaatttcatttcatacact 87919
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>emb|AL603864.8| Mouse DNA sequence from clone RP23-478N15 on chromosome 15, complete
              sequence
          Length = 178412

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 463    ctcttccccaagcatatacct 483
              |||||||||||||||||||||
Sbjct: 157200 ctcttccccaagcatatacct 157220
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>ref|XM_525332.1| PREDICTED: Pan troglodytes LOC469948 (LOC469948), mRNA
          Length = 1128

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 431 atcatccccaaagccgagcc 450
           ||||||||||||||||||||
Sbjct: 916 atcatccccaaagccgagcc 935
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>gb|AC183296.3| Pan troglodytes BAC clone CH251-352A17 from chromosome 19, complete
             sequence
          Length = 180482

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                        
Query: 7     aaagtngcacaaaatttgtaatctgaa 33
             ||||| ||||||||||||||| |||||
Sbjct: 28662 aaagtagcacaaaatttgtaaactgaa 28688
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>ref|NM_020433.4| Homo sapiens junctophilin 2 (JPH2), transcript variant 1, mRNA
          Length = 4802

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 431  atcatccccaaagccgagcc 450
            ||||||||||||||||||||
Sbjct: 2752 atcatccccaaagccgagcc 2771
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>gb|AC148481.9| Medicago truncatula clone mth2-36d21, complete sequence
          Length = 105513

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 426   ctcttatcatccccaaagccgagcctcc 453
             ||||| |||| |||||||||||||||||
Sbjct: 82312 ctcttttcattcccaaagccgagcctcc 82339
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>emb|AL683842.11| Human DNA sequence from clone RP11-47G11 on chromosome 10 Contains the
             gene for B cell RAG associated protein (GALNAC4S-6ST)
             (BRAG, KIAA0598), a novel pseudogene and three CpG
             islands, complete sequence
          Length = 149244

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 95    atttcatttcatacactcag 114
             ||||||||||||||||||||
Sbjct: 31548 atttcatttcatacactcag 31567
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>emb|AL034419.22|HS1108D11 Human DNA sequence from clone RP5-1108D11 on chromosome 20q12-13.11
              Contains the 3' end of the JPH2 gene for junctophilin 2
              (JP2, JP-2), the 3' end of the C20orf100 gene for a novel
              HMG (high mobility group) box protein similar to KIAA0737,
              KIAA0808 and TNRC9 (CAGF9) and two CpG islands, complete
              sequence
          Length = 152209

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 431    atcatccccaaagccgagcc 450
              ||||||||||||||||||||
Sbjct: 104463 atcatccccaaagccgagcc 104444
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>gb|AC095281.6| Rattus norvegicus 4 BAC CH230-10M16 (Children's Hospital Oakland
            Research Institute) complete sequence
          Length = 228330

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 94   aatttcatttcatacactca 113
            ||||||||||||||||||||
Sbjct: 3567 aatttcatttcatacactca 3586
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>gb|BC043206.2| Homo sapiens junctophilin 2, mRNA (cDNA clone IMAGE:5295024), partial
            cds
          Length = 3115

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 431  atcatccccaaagccgagcc 450
            ||||||||||||||||||||
Sbjct: 1042 atcatccccaaagccgagcc 1061
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>gb|AC064801.10| Homo sapiens chromosome 18, clone RP11-120K19, complete sequence
          Length = 167843

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 90    ccacaatttcatttcataca 109
             ||||||||||||||||||||
Sbjct: 73397 ccacaatttcatttcataca 73378
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>gb|AC093240.2| Homo sapiens chromosome 5 clone RP11-103P4, complete sequence
          Length = 163673

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 458    ttctcctcttccccaagcat 477
              ||||||||||||||||||||
Sbjct: 144026 ttctcctcttccccaagcat 144007
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>gb|AC010389.8| Homo sapiens chromosome 5 clone CTD-2077I5, complete sequence
          Length = 134060

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 458   ttctcctcttccccaagcat 477
             ||||||||||||||||||||
Sbjct: 58907 ttctcctcttccccaagcat 58888
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>emb|CT573073.1| Kuenenia stuttgartiensis genome fragment KUST_C (3 of 5)
          Length = 893329

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 606    tggccatattcattattaccccatgccc 633
              ||||||||||| ||||| ||||||||||
Sbjct: 714982 tggccatattcgttatttccccatgccc 714955
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>gb|AC133943.3| Mus musculus BAC clone RP24-104D12 from 3, complete sequence
          Length = 218218

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 585   tgggtatctccaatccccagctgg 608
             ||||||||||||||||||| ||||
Sbjct: 94266 tgggtatctccaatccccatctgg 94243


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,939,380
Number of Sequences: 3902068
Number of extensions: 4939380
Number of successful extensions: 89666
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 89546
Number of HSP's gapped (non-prelim): 120
length of query: 633
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 610
effective length of database: 17,143,297,704
effective search space: 10457411599440
effective search space used: 10457411599440
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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