ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd13g11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1BCAT5_ARATH (Q9FYA6) Branched-chain-amino-acid aminotransferase ... 45 5e-05
2BCAT3_ARATH (Q9M401) Branched-chain-amino-acid aminotransferase ... 39 0.003
3BCAT4_ARATH (Q9LE06) Probable branched-chain-amino-acid aminotra... 32 0.31
4ILVE_STAES (Q8CQ78) Probable branched-chain-amino-acid aminotran... 30 1.5
5ILVE_STAEQ (Q5HRJ8) Probable branched-chain-amino-acid aminotran... 30 1.5
6BBS1_HUMAN (Q8NFJ9) Bardet-Biedl syndrome 1 protein (BBS2-like p... 30 1.5
7RP8L3_ARATH (Q9FJB5) Probable disease resistance RPP8-like prote... 30 1.5
8BCAT6_ARATH (Q9LPM9) Branched-chain-amino-acid aminotransferase ... 30 1.5
9BCAT7_ARATH (Q9LPM8) Putative branched-chain-amino-acid aminotra... 28 4.4
10VSAC_TRYBB (P06016) Variant surface glycoprotein ANTAT 1.1C prec... 28 4.4
11CIK1_YEAST (Q01649) Spindle pole body-associated protein 28 4.4
12ILVE_BACSU (P39576) Putative branched-chain-amino-acid aminotran... 28 5.8
13L2MU_ADE02 (P14269) Late L2 mu core protein precursor (pMu) (Pro... 28 5.8
14FANCA_MOUSE (Q9JL70) Fanconi anemia group A protein homolog (Pro... 28 7.5

>BCAT5_ARATH (Q9FYA6) Branched-chain-amino-acid aminotransferase 5, chloroplast|
           precursor (EC 2.6.1.42) (Atbcat-5)
          Length = 415

 Score = 45.1 bits (105), Expect = 5e-05
 Identities = 20/26 (76%), Positives = 24/26 (92%)
 Frame = -1

Query: 318 QQLYTSLTSLQMGQAEDSMGWTVQLN 241
           +QLYTSLTSLQMG +ED+M WTVQL+
Sbjct: 390 KQLYTSLTSLQMGLSEDNMNWTVQLS 415



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>BCAT3_ARATH (Q9M401) Branched-chain-amino-acid aminotransferase 3, chloroplast|
           precursor (EC 2.6.1.42) (Atbcat-3)
          Length = 413

 Score = 39.3 bits (90), Expect = 0.003
 Identities = 18/26 (69%), Positives = 21/26 (80%)
 Frame = -1

Query: 318 QQLYTSLTSLQMGQAEDSMGWTVQLN 241
           +QLYT LTSLQMG  ED+M WTV L+
Sbjct: 388 KQLYTVLTSLQMGLIEDNMKWTVNLS 413



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>BCAT4_ARATH (Q9LE06) Probable branched-chain-amino-acid aminotransferase 4|
           (Atbcat-4)
          Length = 354

 Score = 32.3 bits (72), Expect = 0.31
 Identities = 11/25 (44%), Positives = 20/25 (80%)
 Frame = -1

Query: 315 QLYTSLTSLQMGQAEDSMGWTVQLN 241
           +LY +L+ +Q G+ ED+ GWTV+++
Sbjct: 327 KLYETLSDIQTGRVEDTKGWTVEID 351



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>ILVE_STAES (Q8CQ78) Probable branched-chain-amino-acid aminotransferase (EC|
           2.6.1.42) (BCAT)
          Length = 358

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -1

Query: 318 QQLYTSLTSLQMGQAEDSMGWTVQL 244
           Q+LY + T +Q G+ ED  GW V++
Sbjct: 331 QKLYDTYTGIQSGKLEDKYGWRVEV 355



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>ILVE_STAEQ (Q5HRJ8) Probable branched-chain-amino-acid aminotransferase (EC|
           2.6.1.42) (BCAT)
          Length = 358

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -1

Query: 318 QQLYTSLTSLQMGQAEDSMGWTVQL 244
           Q+LY + T +Q G+ ED  GW V++
Sbjct: 331 QKLYDTYTGIQSGKLEDKYGWRVEV 355



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>BBS1_HUMAN (Q8NFJ9) Bardet-Biedl syndrome 1 protein (BBS2-like protein 2)|
          Length = 593

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 20/58 (34%), Positives = 30/58 (51%)
 Frame = +1

Query: 139 AEPTTKLKIHKMF*SG*EHREPIGTTXIGKDCWLIQLHGPAHAVLRLAHLEACQRGVQ 312
           A+P   +++HK+   G       G T  GK  W +Q+  PA A+L +  LE   RG+Q
Sbjct: 290 AQPVGLIRVHKVLVVGSTQDSLHGFTHKGKKLWTVQM--PA-AILTMNLLEQHSRGLQ 344



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>RP8L3_ARATH (Q9FJB5) Probable disease resistance RPP8-like protein 3|
          Length = 901

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 26/85 (30%), Positives = 35/85 (41%), Gaps = 3/85 (3%)
 Frame = +2

Query: 29  HTGFGFPFHDKKKRRIRGEATHLMRPHLHMHTRTPLGQSLLQNSRYTRCFNQAENTANPL 208
           H   G P H     +   E  +L  P L MH +T L    L N  Y  CF+   ++   L
Sbjct: 624 HVAIGVPVHVPNVLKEMLELRYLSLP-LDMHDKTKLELGDLVNLEYLWCFSTQHSSVTDL 682

Query: 209 ARRX*AKIVG-*FS--CTVQPMLSS 274
            R    +  G  FS  CT + + SS
Sbjct: 683 LRMTKLRFFGVSFSERCTFENLSSS 707



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>BCAT6_ARATH (Q9LPM9) Branched-chain-amino-acid aminotransferase 6 (EC 2.6.1.42)|
           (Atbcat-6)
          Length = 356

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -1

Query: 315 QLYTSLTSLQMGQAEDSMGWTVQLN 241
           +L++ LT++QMG  ED  GW V ++
Sbjct: 328 KLHSMLTNIQMGVVEDKKGWMVDID 352



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>BCAT7_ARATH (Q9LPM8) Putative branched-chain-amino-acid aminotransferase 7|
           (Atbcat-7)
          Length = 367

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = -1

Query: 315 QLYTSLTSLQMGQAEDSMGWTVQLN 241
           +L+  LT++QMG  ED  GW ++++
Sbjct: 331 KLHLILTNIQMGVVEDKKGWMMEID 355



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>VSAC_TRYBB (P06016) Variant surface glycoprotein ANTAT 1.1C precursor (VSG)|
           (Fragment)
          Length = 482

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -3

Query: 292 PPDGPGGGQHGLDRAAELANNLCLSPSCQW 203
           P  GP G +   D+  +   + C SP+C+W
Sbjct: 423 PKTGPTGTEATTDKCKDKTKDECKSPNCKW 452



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>CIK1_YEAST (Q01649) Spindle pole body-associated protein|
          Length = 594

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 8/57 (14%)
 Frame = +2

Query: 59  KKKRRIRGEATHLMRPHLH--------MHTRTPLGQSLLQNSRYTRCFNQAENTANP 205
           ++K+++ GEA +  + +++        ++TR  L  S+ +   YTRCF  A     P
Sbjct: 334 EEKKQVEGEANNWKKKYVNELEKVQQELYTRQNLATSIEEIKGYTRCFAYANERQMP 390



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>ILVE_BACSU (P39576) Putative branched-chain-amino-acid aminotransferase (EC|
           2.6.1.42) (BCAT) (Vegetative protein 85) (VEG85)
          Length = 362

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -1

Query: 318 QQLYTSLTSLQMGQAEDSMGWTVQL 244
           ++LY ++T +Q G   D  GWT ++
Sbjct: 331 KKLYDTITGIQKGAVADEFGWTTEV 355



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>L2MU_ADE02 (P14269) Late L2 mu core protein precursor (pMu) (Protein X) (pX)|
          (11 kDa core protein)
          Length = 79

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +1

Query: 34 RLRFPVPRQKKKAHTRRGHASY 99
          RLRFPVP  + + H RRG A +
Sbjct: 5  RLRFPVPGFRGRMHRRRGMAGH 26



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>FANCA_MOUSE (Q9JL70) Fanconi anemia group A protein homolog (Protein FACA)|
          Length = 1439

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -1

Query: 162 LEFCSRLCPSGVLVCICRWGRIRCVASP 79
           L FC   C + V  C+C++  +R   SP
Sbjct: 829 LLFCMNFCTAAVSYCLCKFSALRNCLSP 856


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,051,810
Number of Sequences: 219361
Number of extensions: 910182
Number of successful extensions: 2279
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2279
length of database: 80,573,946
effective HSP length: 82
effective length of database: 62,586,344
effective search space used: 1502072256
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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