| Clone Name | rbasd13g05 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 200 bits (101), Expect = 4e-48 Identities = 172/195 (88%), Gaps = 3/195 (1%) Strand = Plus / Plus Query: 369 agagctccaccttctgctccttgtagctctggagtaggaagtccttcccttctatcacct 428 ||||||||||||||||||||||||||||||| || ||||||||||||||||| || || | Sbjct: 22464873 agagctccaccttctgctccttgtagctctgaagcaggaagtccttcccttcgataactt 22464932 Query: 429 ccttcagctcgccgacctctctcttgagcatctccaccctatctgcctcgccgttcctct 488 |||| ||||| |||||||| |||||||||||||||||||| |||||||| || ||||| | Sbjct: 22464933 cctttagctcaccgacctccctcttgagcatctccaccctttctgcctctcctttccttt 22464992 Query: 489 tctcgacaccgatacagtgcagctcagggtcatcaa---tgctgctatcagcgtagccat 545 | |||| || ||| | ||||||||||||||||||| ||||||||||||| ||||||| Sbjct: 22464993 tgtcgaggccaataaaatgcagctcagggtcatcaacactgctgctatcagcatagccat 22465052 Query: 546 tcgcatgcccattgg 560 | ||||||||||||| Sbjct: 22465053 tggcatgcccattgg 22465067 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Plus Query: 304 tagatcctacaagatgttgggcacttg 330 ||||||||||| ||||||||||||||| Sbjct: 22464808 tagatcctacaggatgttgggcacttg 22464834
>dbj|AP005800.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0016D04 Length = 147313 Score = 200 bits (101), Expect = 4e-48 Identities = 172/195 (88%), Gaps = 3/195 (1%) Strand = Plus / Plus Query: 369 agagctccaccttctgctccttgtagctctggagtaggaagtccttcccttctatcacct 428 ||||||||||||||||||||||||||||||| || ||||||||||||||||| || || | Sbjct: 35229 agagctccaccttctgctccttgtagctctgaagcaggaagtccttcccttcgataactt 35288 Query: 429 ccttcagctcgccgacctctctcttgagcatctccaccctatctgcctcgccgttcctct 488 |||| ||||| |||||||| |||||||||||||||||||| |||||||| || ||||| | Sbjct: 35289 cctttagctcaccgacctccctcttgagcatctccaccctttctgcctctcctttccttt 35348 Query: 489 tctcgacaccgatacagtgcagctcagggtcatcaa---tgctgctatcagcgtagccat 545 | |||| || ||| | ||||||||||||||||||| ||||||||||||| ||||||| Sbjct: 35349 tgtcgaggccaataaaatgcagctcagggtcatcaacactgctgctatcagcatagccat 35408 Query: 546 tcgcatgcccattgg 560 | ||||||||||||| Sbjct: 35409 tggcatgcccattgg 35423 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Plus Query: 304 tagatcctacaagatgttgggcacttg 330 ||||||||||| ||||||||||||||| Sbjct: 35164 tagatcctacaggatgttgggcacttg 35190
>dbj|AK068936.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023003F10, full insert sequence Length = 1730 Score = 200 bits (101), Expect = 4e-48 Identities = 172/195 (88%), Gaps = 3/195 (1%) Strand = Plus / Minus Query: 369 agagctccaccttctgctccttgtagctctggagtaggaagtccttcccttctatcacct 428 ||||||||||||||||||||||||||||||| || ||||||||||||||||| || || | Sbjct: 1260 agagctccaccttctgctccttgtagctctgaagcaggaagtccttcccttcgataactt 1201 Query: 429 ccttcagctcgccgacctctctcttgagcatctccaccctatctgcctcgccgttcctct 488 |||| ||||| |||||||| |||||||||||||||||||| |||||||| || ||||| | Sbjct: 1200 cctttagctcaccgacctccctcttgagcatctccaccctttctgcctctcctttccttt 1141 Query: 489 tctcgacaccgatacagtgcagctcagggtcatcaa---tgctgctatcagcgtagccat 545 | |||| || ||| | ||||||||||||||||||| ||||||||||||| ||||||| Sbjct: 1140 tgtcgaggccaataaaatgcagctcagggtcatcaacactgctgctatcagcatagccat 1081 Query: 546 tcgcatgcccattgg 560 | ||||||||||||| Sbjct: 1080 tggcatgcccattgg 1066 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Minus Query: 304 tagatcctacaagatgttgggcacttg 330 ||||||||||| ||||||||||||||| Sbjct: 1325 tagatcctacaggatgttgggcacttg 1299
>gb|AC098598.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1007_H05, complete sequence Length = 108479 Score = 159 bits (80), Expect = 1e-35 Identities = 212/256 (82%) Strand = Plus / Plus Query: 305 agatcctacaagatgttgggcacttgcgccgagagcctctcttgcagctctctcatcctt 364 |||||||||||||||||||| ||||| || |||||| | ||||||| ||||| ||| | Sbjct: 61425 agatcctacaagatgttgggaacttgtgcagagagcttttcttgcaattctctgatcttc 61484 Query: 365 gagcagagctccaccttctgctccttgtagctctggagtaggaagtccttcccttctatc 424 |||||||| | ||||||||||||||||||||| | ||||| ||||| ||||| || Sbjct: 61485 ccacagagctctagcttctgctccttgtagctctgaatcaggaaatcctttccttcaata 61544 Query: 425 acctccttcagctcgccgacctctctcttgagcatctccaccctatctgcctcgccgttc 484 || |||||||| || | |||||| | ||||||||| |||||| | ||| |||| || ||| Sbjct: 61545 acttccttcagatcacagacctcccgcttgagcatttccaccttctctacctctcccttc 61604 Query: 485 ctcttctcgacaccgatacagtgcagctcagggtcatcaatgctgctatcagcgtagcca 544 || ||||| | ||| ||| | ||||||||||||||||||| ||||||||||| |||||| Sbjct: 61605 cttttctcaataccaatataatgcagctcagggtcatcaacactgctatcagcatagcca 61664 Query: 545 ttcgcatgcccattgg 560 || ||||||||||||| Sbjct: 61665 ttagcatgcccattgg 61680
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 159 bits (80), Expect = 1e-35 Identities = 212/256 (82%) Strand = Plus / Plus Query: 305 agatcctacaagatgttgggcacttgcgccgagagcctctcttgcagctctctcatcctt 364 |||||||||||||||||||| ||||| || |||||| | ||||||| ||||| ||| | Sbjct: 29051370 agatcctacaagatgttgggaacttgtgcagagagcttttcttgcaattctctgatcttc 29051429 Query: 365 gagcagagctccaccttctgctccttgtagctctggagtaggaagtccttcccttctatc 424 |||||||| | ||||||||||||||||||||| | ||||| ||||| ||||| || Sbjct: 29051430 ccacagagctctagcttctgctccttgtagctctgaatcaggaaatcctttccttcaata 29051489 Query: 425 acctccttcagctcgccgacctctctcttgagcatctccaccctatctgcctcgccgttc 484 || |||||||| || | |||||| | ||||||||| |||||| | ||| |||| || ||| Sbjct: 29051490 acttccttcagatcacagacctcccgcttgagcatttccaccttctctacctctcccttc 29051549 Query: 485 ctcttctcgacaccgatacagtgcagctcagggtcatcaatgctgctatcagcgtagcca 544 || ||||| | ||| ||| | ||||||||||||||||||| ||||||||||| |||||| Sbjct: 29051550 cttttctcaataccaatataatgcagctcagggtcatcaacactgctatcagcatagcca 29051609 Query: 545 ttcgcatgcccattgg 560 || ||||||||||||| Sbjct: 29051610 ttagcatgcccattgg 29051625
>dbj|AK102121.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033084N12, full insert sequence Length = 1582 Score = 159 bits (80), Expect = 1e-35 Identities = 212/256 (82%) Strand = Plus / Minus Query: 305 agatcctacaagatgttgggcacttgcgccgagagcctctcttgcagctctctcatcctt 364 |||||||||||||||||||| ||||| || |||||| | ||||||| ||||| ||| | Sbjct: 1278 agatcctacaagatgttgggaacttgtgcagagagcttttcttgcaattctctgatcttc 1219 Query: 365 gagcagagctccaccttctgctccttgtagctctggagtaggaagtccttcccttctatc 424 |||||||| | ||||||||||||||||||||| | ||||| ||||| ||||| || Sbjct: 1218 ccacagagctctagcttctgctccttgtagctctgaatcaggaaatcctttccttcaata 1159 Query: 425 acctccttcagctcgccgacctctctcttgagcatctccaccctatctgcctcgccgttc 484 || |||||||| || | |||||| | ||||||||| |||||| | ||| |||| || ||| Sbjct: 1158 acttccttcagatcacagacctcccgcttgagcatttccaccttctctacctctcccttc 1099 Query: 485 ctcttctcgacaccgatacagtgcagctcagggtcatcaatgctgctatcagcgtagcca 544 || ||||| | ||| ||| | ||||||||||||||||||| ||||||||||| |||||| Sbjct: 1098 cttttctcaataccaatataatgcagctcagggtcatcaacactgctatcagcatagcca 1039 Query: 545 ttcgcatgcccattgg 560 || ||||||||||||| Sbjct: 1038 ttagcatgcccattgg 1023
>ref|XM_475987.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1023 Score = 149 bits (75), Expect = 1e-32 Identities = 207/251 (82%) Strand = Plus / Minus Query: 310 ctacaagatgttgggcacttgcgccgagagcctctcttgcagctctctcatccttgagca 369 ||||||||||||||| ||||| || |||||| | ||||||| ||||| ||| | || Sbjct: 1023 ctacaagatgttgggaacttgtgcagagagcttttcttgcaattctctgatcttcccaca 964 Query: 370 gagctccaccttctgctccttgtagctctggagtaggaagtccttcccttctatcacctc 429 |||||| | ||||||||||||||||||||| | ||||| ||||| ||||| || || || Sbjct: 963 gagctctagcttctgctccttgtagctctgaatcaggaaatcctttccttcaataacttc 904 Query: 430 cttcagctcgccgacctctctcttgagcatctccaccctatctgcctcgccgttcctctt 489 |||||| || | |||||| | ||||||||| |||||| | ||| |||| || ||||| || Sbjct: 903 cttcagatcacagacctcccgcttgagcatttccaccttctctacctctcccttcctttt 844 Query: 490 ctcgacaccgatacagtgcagctcagggtcatcaatgctgctatcagcgtagccattcgc 549 ||| | ||| ||| | ||||||||||||||||||| ||||||||||| |||||||| || Sbjct: 843 ctcaataccaatataatgcagctcagggtcatcaacactgctatcagcatagccattagc 784 Query: 550 atgcccattgg 560 ||||||||||| Sbjct: 783 atgcccattgg 773
>emb|AJ012272.1|MOB012272 Magnolia obovata DNA sequence for microsatellite M10D8 Length = 459 Score = 58.0 bits (29), Expect = 3e-05 Identities = 71/85 (83%) Strand = Plus / Plus Query: 350 agctctctcatccttgagcagagctccaccttctgctccttgtagctctggagtaggaag 409 |||||| ||||| ||||||| ||||||| |||||||||||||||||| | || || || Sbjct: 253 agctctgtcatctttgagcacagctccatattctgctccttgtagctccgtagcagaaac 312 Query: 410 tccttcccttctatcacctccttca 434 |||||| |||| | | ||||||||| Sbjct: 313 tccttcgcttcgaccgcctccttca 337
>gb|AC026123.24| Homo sapiens 16 BAC RP11-174D5 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 170088 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Minus Query: 340 cctctcttgcagctctctcatc 361 |||||||||||||||||||||| Sbjct: 89877 cctctcttgcagctctctcatc 89856
>gb|AC161370.3| Mus musculus BAC clone RP23-437J23 from chromosome 9, complete sequence Length = 187354 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Minus Query: 116 aactggggaaaaaaacctaagc 137 |||||||||||||||||||||| Sbjct: 141198 aactggggaaaaaaacctaagc 141177
>gb|AC068614.5| Homo sapiens BAC clone RP11-512N1 from 2, complete sequence Length = 164706 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 442 gacctctctcttgagcatctcc 463 |||||||||||||||||||||| Sbjct: 161215 gacctctctcttgagcatctcc 161236
>gb|AC084058.6| Homo sapiens chromosome 16 clone CTD-2119F7, complete sequence Length = 160487 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Minus Query: 340 cctctcttgcagctctctcatc 361 |||||||||||||||||||||| Sbjct: 140170 cctctcttgcagctctctcatc 140149
>gb|AC124424.4| Mus musculus BAC clone RP24-230J3 from chromosome 2, complete sequence Length = 190802 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 442 gacctctctcttgagcatctc 462 ||||||||||||||||||||| Sbjct: 83380 gacctctctcttgagcatctc 83400
>emb|AL844163.7| Mouse DNA sequence from clone RP23-467L21 on chromosome 2, complete sequence Length = 165671 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 442 gacctctctcttgagcatctc 462 ||||||||||||||||||||| Sbjct: 138239 gacctctctcttgagcatctc 138219
>gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome Length = 3730232 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 269 tacatccgcctgcgccttgt 288 |||||||||||||||||||| Sbjct: 2207157 tacatccgcctgcgccttgt 2207176
>gb|AC146106.3| Pan troglodytes BAC clone RP43-5I17 from 7, complete sequence Length = 221821 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 233 gaaatattttcctgtgaatc 252 |||||||||||||||||||| Sbjct: 136128 gaaatattttcctgtgaatc 136109
>gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, complete sequence Length = 6365727 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 238 attttcctgtgaatcccttgacaa 261 |||||||||| ||||||||||||| Sbjct: 5508718 attttcctgttaatcccttgacaa 5508741
>gb|AC092676.2| Homo sapiens BAC clone RP11-641E23 from 7, complete sequence Length = 118035 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 233 gaaatattttcctgtgaatc 252 |||||||||||||||||||| Sbjct: 65972 gaaatattttcctgtgaatc 65953
>emb|AL583920.1|MLEPRTN4 Mycobacterium leprae strain TN complete genome; segment 4/10 Length = 348450 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 491 tcgacaccgatacagtgcag 510 |||||||||||||||||||| Sbjct: 312928 tcgacaccgatacagtgcag 312909
>gb|U15186.1|MLU15186 Mycobacterium leprae cosmid L471 Length = 36241 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 491 tcgacaccgatacagtgcag 510 |||||||||||||||||||| Sbjct: 32214 tcgacaccgatacagtgcag 32233
>emb|BX088526.6| Zebrafish DNA sequence from clone CH211-51H9 in linkage group 8, complete sequence Length = 187161 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 194 tcaatgtaaacattctgcaaagac 217 |||||||||||| ||||||||||| Sbjct: 178153 tcaatgtaaacaatctgcaaagac 178130
>gb|AC154309.1| Mus musculus BAC clone RP23-370I7 from chromosome 16, complete sequence Length = 178958 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 113 agcaactggggaaaaaaacctaag 136 |||||||||||||||||| ||||| Sbjct: 15286 agcaactggggaaaaaaagctaag 15309
>gb|AC152506.2| Pan troglodytes BAC clone RP43-4B9 from chromosome 7, complete sequence Length = 181146 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 233 gaaatattttcctgtgaatc 252 |||||||||||||||||||| Sbjct: 99132 gaaatattttcctgtgaatc 99113
>dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome Length = 6413771 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 238 attttcctgtgaatcccttgacaa 261 |||||||||| ||||||||||||| Sbjct: 1339991 attttcctgttaatcccttgacaa 1340014
>gb|AC149899.2| Xenopus tropicalis clone ISB-339J14, complete sequence Length = 82063 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 341 ctctcttgcagctctctcatcctt 364 ||||||||||||||||||| |||| Sbjct: 78396 ctctcttgcagctctctcagcctt 78419
>emb|AL731700.12| Mouse DNA sequence from clone RP23-239G1 on chromosome 2, complete sequence Length = 187667 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 192 aatcaatgtaaacattctgc 211 |||||||||||||||||||| Sbjct: 55245 aatcaatgtaaacattctgc 55226 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,147,537 Number of Sequences: 3902068 Number of extensions: 4147537 Number of successful extensions: 73007 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 26 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 72870 Number of HSP's gapped (non-prelim): 130 length of query: 564 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 541 effective length of database: 17,143,297,704 effective search space: 9274524057864 effective search space used: 9274524057864 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)