ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd13e20 |
|---|---|
| Clone Library Name | barley_pub |
>RTN3_HUMAN (O95197) Reticulon-3 (Neuroendocrine-specific protein-like 2)| (NSP-like protein II) (NSPLII) Length = 236 Score = 42.0 bits (97), Expect = 0.001 Identities = 24/83 (28%), Positives = 46/83 (55%) Frame = -2 Query: 511 DLKKFLIVIXGLWVLSVLGSCCNFLTLSYIVFVVLYTVPVLYEKYDDKVDAFGEKAMIEL 332 DL L + +W+++ +G+ N +TL + +++++VP++YEKY ++D + A + Sbjct: 157 DLVDSLKLAVFMWLMTYVGAVFNGITLLILAELLIFSVPIVYEKYKTQIDHYVGIARDQT 216 Query: 331 KKYYAIFEEKVLXKIPKGALKNK 263 K EK+ K+P G K K Sbjct: 217 KS----IVEKIQAKLP-GIAKKK 234
>RTN3_MOUSE (Q9ES97) Reticulon-3| Length = 237 Score = 41.6 bits (96), Expect = 0.001 Identities = 24/83 (28%), Positives = 46/83 (55%) Frame = -2 Query: 511 DLKKFLIVIXGLWVLSVLGSCCNFLTLSYIVFVVLYTVPVLYEKYDDKVDAFGEKAMIEL 332 DL L + +W+++ +G+ N +TL + +++++VP++YEKY ++D + A + Sbjct: 158 DLVDSLKLAVFMWLMTYVGAVFNGITLLILAELLVFSVPIVYEKYKTQIDHYVGIARDQT 217 Query: 331 KKYYAIFEEKVLXKIPKGALKNK 263 K EK+ K+P G K K Sbjct: 218 KS----IVEKIQAKLP-GIAKKK 235
>RTN4_HUMAN (Q9NQC3) Reticulon-4 (Neurite outgrowth inhibitor) (Nogo protein)| (Foocen) (Neuroendocrine-specific protein) (NSP) (Neuroendocrine-specific protein C homolog) (RTN-x) (Reticulon-5) Length = 1192 Score = 41.2 bits (95), Expect = 0.002 Identities = 27/83 (32%), Positives = 45/83 (54%) Frame = -2 Query: 511 DLKKFLIVIXGLWVLSVLGSCCNFLTLSYIVFVVLYTVPVLYEKYDDKVDAFGEKAMIEL 332 D KF ++ +WV + +G+ N LTL + + L++VPV+YE++ ++D + A + Sbjct: 1117 DSLKFAVL---MWVFTYVGALFNGLTLLILALISLFSVPVIYERHQAQIDHYLGLANKNV 1173 Query: 331 KKYYAIFEEKVLXKIPKGALKNK 263 K A K+ KIP LK K Sbjct: 1174 KDAMA----KIQAKIP--GLKRK 1190
>RTN4_MOUSE (Q99P72) Reticulon-4 (Neurite outgrowth inhibitor) (Nogo protein)| Length = 1162 Score = 40.8 bits (94), Expect = 0.002 Identities = 26/83 (31%), Positives = 45/83 (54%) Frame = -2 Query: 511 DLKKFLIVIXGLWVLSVLGSCCNFLTLSYIVFVVLYTVPVLYEKYDDKVDAFGEKAMIEL 332 D KF ++ +WV + +G+ N LTL + + L+++PV+YE++ ++D + A + Sbjct: 1087 DSLKFAVL---MWVFTYVGALFNGLTLLILALISLFSIPVIYERHQAQIDHYLGLANKSV 1143 Query: 331 KKYYAIFEEKVLXKIPKGALKNK 263 K A K+ KIP LK K Sbjct: 1144 KDAMA----KIQAKIP--GLKRK 1160
>RTN4_RAT (Q9JK11) Reticulon-4 (Neurite outgrowth inhibitor) (Nogo protein)| (Foocen) (Glut4 vesicle 20 kDa protein) Length = 1163 Score = 40.4 bits (93), Expect = 0.003 Identities = 26/83 (31%), Positives = 45/83 (54%) Frame = -2 Query: 511 DLKKFLIVIXGLWVLSVLGSCCNFLTLSYIVFVVLYTVPVLYEKYDDKVDAFGEKAMIEL 332 D KF ++ +WV + +G+ N LTL + + L+++PV+YE++ ++D + A + Sbjct: 1088 DSLKFAVL---MWVFTYVGALFNGLTLLILALISLFSIPVIYERHQVQIDHYLGLANKSV 1144 Query: 331 KKYYAIFEEKVLXKIPKGALKNK 263 K A K+ KIP LK K Sbjct: 1145 KDAMA----KIQAKIP--GLKRK 1161
>RTN1_RAT (Q64548) Reticulon-1 (Neuroendocrine-specific protein) (S-rex)| Length = 777 Score = 37.7 bits (86), Expect = 0.020 Identities = 18/52 (34%), Positives = 33/52 (63%) Frame = -2 Query: 511 DLKKFLIVIXGLWVLSVLGSCCNFLTLSYIVFVVLYTVPVLYEKYDDKVDAF 356 D KF ++ +W+L+ +G+ N LTL + V ++T+PV+Y K+ +VD + Sbjct: 702 DSLKFAVL---MWLLTYVGALFNGLTLLLMAVVSMFTLPVVYVKHQAQVDQY 750
>RTN1_MOUSE (Q8K0T0) Reticulon-1 (Neuroendocrine-specific protein)| Length = 780 Score = 37.7 bits (86), Expect = 0.020 Identities = 18/52 (34%), Positives = 33/52 (63%) Frame = -2 Query: 511 DLKKFLIVIXGLWVLSVLGSCCNFLTLSYIVFVVLYTVPVLYEKYDDKVDAF 356 D KF ++ +W+L+ +G+ N LTL + V ++T+PV+Y K+ +VD + Sbjct: 705 DSLKFAVL---MWLLTYVGALFNGLTLLLMAVVSMFTLPVVYVKHQAQVDQY 753
>RTN1_PANTR (Q5IS59) Reticulon-1| Length = 776 Score = 37.4 bits (85), Expect = 0.026 Identities = 17/52 (32%), Positives = 33/52 (63%) Frame = -2 Query: 511 DLKKFLIVIXGLWVLSVLGSCCNFLTLSYIVFVVLYTVPVLYEKYDDKVDAF 356 D KF ++ +W+L+ +G+ N LTL + V ++T+PV+Y K+ ++D + Sbjct: 701 DSLKFAVL---MWLLTYVGALFNGLTLLLMAVVSMFTLPVVYVKHQAQIDQY 749
>RTN1_HUMAN (Q16799) Reticulon-1 (Neuroendocrine-specific protein)| Length = 776 Score = 37.4 bits (85), Expect = 0.026 Identities = 17/52 (32%), Positives = 33/52 (63%) Frame = -2 Query: 511 DLKKFLIVIXGLWVLSVLGSCCNFLTLSYIVFVVLYTVPVLYEKYDDKVDAF 356 D KF ++ +W+L+ +G+ N LTL + V ++T+PV+Y K+ ++D + Sbjct: 701 DSLKFAVL---MWLLTYVGALFNGLTLLLMAVVSMFTLPVVYVKHQAQIDQY 749
>RTN2_MOUSE (O70622) Reticulon-2 (Neuroendocrine-specific protein-like 1)| (NSP-like protein 1) (NSPLI) Length = 471 Score = 35.4 bits (80), Expect = 0.100 Identities = 23/76 (30%), Positives = 39/76 (51%) Frame = -2 Query: 511 DLKKFLIVIXGLWVLSVLGSCCNFLTLSYIVFVVLYTVPVLYEKYDDKVDAFGEKAMIEL 332 DL L + ++L+ +G+ N LTL + V L+TVP+LY ++ ++D + +L Sbjct: 381 DLVDSLKLALLFYILTFVGAIFNGLTLVILGVVALFTVPLLYRQHQAQIDQYVGLVTNQL 440 Query: 331 KKYYAIFEEKVLXKIP 284 A K+ KIP Sbjct: 441 SHIKA----KIRAKIP 452
>RTN2_HUMAN (O75298) Reticulon-2 (Neuroendocrine-specific protein-like 1)| (NSP-like protein 1) (NSPLI) Length = 545 Score = 33.9 bits (76), Expect = 0.29 Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 1/81 (1%) Frame = -2 Query: 511 DLKKFLIVIXGLWVLSVLGSCCNFLTLSYIVFVVLYTVPVLYEKYDDKVDAFGEKAMIEL 332 DL L + ++L+ +G+ N LTL + + L+T+P+LY ++ ++D + +L Sbjct: 454 DLVDSLKLALLFYILTFVGAIFNGLTLLILGVIGLFTIPLLYRQHQAQIDQYVGLVTNQL 513 Query: 331 KKYYAIFEEKVLXKIP-KGAL 272 A K+ KIP GAL Sbjct: 514 SHIKA----KIRAKIPGTGAL 530
>YL185_MIMIV (Q5URB5) Hypothetical protein L185| Length = 392 Score = 32.7 bits (73), Expect = 0.65 Identities = 17/42 (40%), Positives = 26/42 (61%) Frame = +2 Query: 287 DLRQDLLFKDGIILLQLDHGLLTKSINLVIILLIQNWDSVQH 412 D DL+F + +ILL ++G +I++V ILL DS+QH Sbjct: 147 DTNNDLIFNNDLILLIFEYGFFEDTIDVVKILL----DSIQH 184
>PRP5_YARLI (Q6CCZ1) Pre-mRNA-processing ATP-dependent RNA helicase PRP5 (EC| 3.6.1.-) Length = 974 Score = 30.8 bits (68), Expect = 2.5 Identities = 11/40 (27%), Positives = 24/40 (60%) Frame = +2 Query: 308 FKDGIILLQLDHGLLTKSINLVIILLIQNWDSVQHHKDYI 427 FK G++ + + + + +++ + L+ NWDS H +DY+ Sbjct: 710 FKSGLVSVLIATSVAARGLDVKGLGLVVNWDSPNHMEDYV 749
>TSN4_MOUSE (Q9DCK3) Tetraspanin-4 (Tspan-4) (Transmembrane 4 superfamily| member 7) Length = 238 Score = 30.8 bits (68), Expect = 2.5 Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 12/69 (17%) Frame = -2 Query: 496 LIVIXGLWVLSVLGSCC------------NFLTLSYIVFVVLYTVPVLYEKYDDKVDAFG 353 L+++ G +V+++ C F L +VF++ T+ VL+ Y DK+D++ Sbjct: 56 LLIVTGTFVMAIGFVGCIGALKENKCLLLTFFVLLLLVFLLEATIAVLFFAYSDKIDSYA 115 Query: 352 EKAMIELKK 326 ++ +LKK Sbjct: 116 QQ---DLKK 121
>TSN4_HUMAN (O14817) Tetraspanin-4 (Tspan-4) (Transmembrane 4 superfamily| member 7) (Novel antigen 2) (NAG-2) Length = 238 Score = 29.6 bits (65), Expect = 5.5 Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 12/69 (17%) Frame = -2 Query: 496 LIVIXGLWVLSV-----LGSC-------CNFLTLSYIVFVVLYTVPVLYEKYDDKVDAFG 353 L++I G +V+++ LG+ F L +VF++ T+ +L+ Y DK+D + Sbjct: 56 LLIITGAFVMAIGFVGCLGAIKENKCLLLTFFLLLLLVFLLEATIAILFFAYTDKIDRYA 115 Query: 352 EKAMIELKK 326 ++ +LKK Sbjct: 116 QQ---DLKK 121
>Y779_METJA (Q58189) Hypothetical protein MJ0779| Length = 299 Score = 28.9 bits (63), Expect = 9.3 Identities = 19/61 (31%), Positives = 36/61 (59%), Gaps = 4/61 (6%) Frame = -2 Query: 532 REIGHGRDLKKFLIVIXGLWVLSVLGSCCNFLTL-SYIVFVVLYTVPVLYEK---YDDKV 365 +++G D KKF++++ + + +L S LTL S I+FVV+Y L+ Y++K+ Sbjct: 21 KKLGKDFDEKKFILLLIIIAAIPLLISYYLHLTLKSMIIFVVIYVGAALFIPSILYENKI 80 Query: 364 D 362 + Sbjct: 81 E 81
>NU2M_ASCSU (P24877) NADH-ubiquinone oxidoreductase chain 2 (EC 1.6.5.3) (NADH| dehydrogenase subunit 2) Length = 300 Score = 28.9 bits (63), Expect = 9.3 Identities = 13/34 (38%), Positives = 21/34 (61%) Frame = -2 Query: 475 WVLSVLGSCCNFLTLSYIVFVVLYTVPVLYEKYD 374 WV SV GS ++L + ++ F L +PVL + +D Sbjct: 88 WVFSVTGSLYDWLLMWFLTFQKLPFLPVLVQLFD 121 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 59,116,491 Number of Sequences: 219361 Number of extensions: 929333 Number of successful extensions: 3088 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 3037 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3087 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4142954952 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
