ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd13d17 |
|---|---|
| Clone Library Name | barley_pub |
>PP2C7_YEAST (P38797) Protein phosphatase 2C homolog 7 (EC 3.1.3.16) (PP2C-7)| Length = 374 Score = 63.9 bits (154), Expect = 4e-10 Identities = 46/169 (27%), Positives = 77/169 (45%), Gaps = 18/169 (10%) Frame = -2 Query: 627 GSSTVLVAHFDGQ-VLHVSNIGDSGLLVIRNGQVYTQTKAMTYGFNFPLQI--------- 478 G +T +VAHF L V+N+GDS V R+ ++ QTK T GFN P Q+ Sbjct: 202 GGTTAIVAHFPSNGKLEVANLGDSWCGVFRDSKLVFQTKFQTVGFNAPYQLSIIPEEMLK 261 Query: 477 -------ENGVDPSRLVQNYAIDLQEGDAIVTASDGLFDNVYDHEVASIVSKSLEADRKP 319 + ++ R Y+ L++ D I+ A+DG+ DN+ ++ + + Sbjct: 262 EAERRGSKYILNTPRDADEYSFQLKKKDIIILATDGVTDNIATDDIELFLKDNAARTNDE 321 Query: 318 TE-IAELLAARAKEVGRSGSGRSPFSDAALAEGYLGYSGGKLDDVTVVV 175 + +++ + + + S F+ YSGGK DD+TVVV Sbjct: 322 LQLLSQKFVDNVVSLSKDPNYPSVFAQEISKLTGKNYSGGKEDDITVVV 370
>AZR1_SCHPO (Q09189) 5-azacytidine resistance protein azr1| Length = 288 Score = 59.3 bits (142), Expect = 1e-08 Identities = 43/158 (27%), Positives = 73/158 (46%), Gaps = 16/158 (10%) Frame = -2 Query: 627 GSSTVLVAHFD--GQVLHVSNIGDSGLLVIRNGQVYTQTKAMTYGFNFPLQI-------- 478 GSST + F+ LH N+GDSG L++RNG ++ + A FN P Q+ Sbjct: 126 GSSTACLTLFNCGNGKLHSLNLGDSGFLILRNGAIHYASPAQVLQFNMPYQLAIYPRNYR 185 Query: 477 -ENGVDPSRLVQNYAIDLQEGDAIVTASDGLFDNVYDHEVASIV-----SKSLEADRKPT 316 + P ++ Q DL++ D ++ A+DG+FDN+ + + I S + Sbjct: 186 SAENIGP-KMGQATVHDLKDNDLVILATDGIFDNIEEKSILDIAGVVDFSSLSNVQKCLD 244 Query: 315 EIAELLAARAKEVGRSGSGRSPFSDAALAEGYLGYSGG 202 ++A + +A SPF+ A + G+ + GG Sbjct: 245 DLAMRICRQAVLNSLDTKWESPFAKTAKSFGF-KFQGG 281
>MID2_YEAST (P36027) Mating process protein MID2 (Serine-rich protein SMS1)| (Protein kinase A interference protein) Length = 376 Score = 32.3 bits (72), Expect = 1.3 Identities = 41/165 (24%), Positives = 72/165 (43%), Gaps = 12/165 (7%) Frame = +2 Query: 35 IGSFFSPNASIRTRSEYGSQLAAAMAIRSE*KYNLSTAYSSDFLTMDTTTVTSSNLXXXX 214 + S S ++++ T S+++++ +I S + S+A SS T++ +S +L Sbjct: 29 VQSSSSNSSAVSTARSSVSRVSSSSSILSSSMVSSSSADSSSL----TSSTSSRSLVSHT 84 Query: 215 XXXXXXXXXXXNGLLPDPDLPTSFALAARS-----SAISVGLRSASRDFETID---ATS* 370 D TS + +A S S+ S+ SA+ + T +TS Sbjct: 85 SSSTSIASISFTSFSFSSDSSTSSSSSASSDSSSSSSFSISSTSATSESSTSSTQTSTSS 144 Query: 371 S*TLSNRPSDAVT----MASPSCKSIA*FCTSLEGSTPFSICNGK 493 S +LS+ PS + + ++PS S +GST SI NGK Sbjct: 145 SSSLSSTPSSSSSPSTITSAPSTSSTPSTTAYNQGSTITSIINGK 189
>POLG_HCVJL (Q68798) Genome polyprotein [Contains: Core protein p21 (Capsid| protein C) (p21); Core protein p19; Envelope glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine protease/N Length = 3021 Score = 32.0 bits (71), Expect = 1.6 Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 4/88 (4%) Frame = -2 Query: 507 TYGFNFPLQIENGVDPSRLVQNYAIDLQEGDAIVTASDGLFDNVYDHEVA--SIVSKSLE 334 T G N + GVD S + + + + DA++T G FD+V D VA IV SL+ Sbjct: 1412 TLGLN-AVAFYRGVDVSVIPTSGDVVVCATDALMTGYTGDFDSVIDCNVAVTQIVDFSLD 1470 Query: 333 A--DRKPTEIAELLAARAKEVGRSGSGR 256 + T + + AR++ GR+G G+ Sbjct: 1471 PTFSIETTTVPQDAVARSQRRGRTGRGK 1498
>PP2CE_HUMAN (Q96MI6) Protein phosphatase 2C isoform eta (EC 3.1.3.16)| (PP2C-eta) (PP2CE) (Protein phosphatase 1M) Length = 270 Score = 31.6 bits (70), Expect = 2.1 Identities = 14/38 (36%), Positives = 26/38 (68%) Frame = -2 Query: 435 IDLQEGDAIVTASDGLFDNVYDHEVASIVSKSLEADRK 322 ++LQE D +V A+DGL+D + + +VA +V L +++ Sbjct: 210 LELQEDDVVVMATDGLWDVLSNEQVAWLVRSFLPGNQE 247
>RPOC_GEOKA (Q5L404) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1199 Score = 31.6 bits (70), Expect = 2.1 Identities = 19/58 (32%), Positives = 31/58 (53%) Frame = -2 Query: 642 EARSPGSSTVLVAHFDGQVLHVSNIGDSGLLVIRNGQVYTQTKAMTYGFNFPLQIENG 469 EAR+P V ++ DG V+ ++ D+ V+ G+V T+T Y N L++E G Sbjct: 961 EARNPKGQAV-ISEIDGTVISINKTRDNQYEVVVQGEVETRTYVAPY--NARLKVEEG 1015
>Y2049_PROAC (Q6A651) UPF0085 protein PPA2049| Length = 294 Score = 31.2 bits (69), Expect = 2.8 Identities = 21/48 (43%), Positives = 27/48 (56%) Frame = -2 Query: 279 VGRSGSGRSPFSDAALAEGYLGYSGGKLDDVTVVVSIVRKSEL*AVDK 136 VG S SG++P S YLGY G K +V +V I +EL AVD+ Sbjct: 155 VGVSRSGKTPLSI------YLGYLGYKTVNVPLVPGIAPPTELAAVDR 196
>YM67_YEAST (Q03661) Hypothetical 187.1 kDa protein in GUA1-ERG8 intergenic| region Length = 1658 Score = 30.8 bits (68), Expect = 3.6 Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 3/64 (4%) Frame = -2 Query: 384 DNVYDHEVASIVSKSLEAD---RKPTEIAELLAARAKEVGRSGSGRSPFSDAALAEGYLG 214 + + D E + KS+E+D P + +L A + +S + P + ++E YLG Sbjct: 509 NQINDVEGYDVTGKSVESDLHEHSPDNLYDLAARAMLQFQQSRNSNCPQKEEQVSESYLG 568 Query: 213 YSGG 202 +S G Sbjct: 569 HSNG 572
>POLG_HCVVN (O92530) Genome polyprotein [Contains: Core protein p21 (Capsid| protein C) (p21); Core protein p19; Envelope glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine protease/N Length = 3012 Score = 30.8 bits (68), Expect = 3.6 Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 4/88 (4%) Frame = -2 Query: 507 TYGFNFPLQIENGVDPSRLVQNYAIDLQEGDAIVTASDGLFDNVYDHEVA--SIVSKSLE 334 T G N + GVD S + + + DA++T G FD+V D VA IV SL+ Sbjct: 1406 TLGLN-AVAFYRGVDVSVIPTAGDVVVCATDALMTGYTGDFDSVIDCNVAVTQIVDFSLD 1464 Query: 333 A--DRKPTEIAELLAARAKEVGRSGSGR 256 + T + + AR++ GR+G G+ Sbjct: 1465 PTFSIETTTVPQDAVARSQRRGRTGRGK 1492
>HMW2_MYCPN (P75471) Cytadherence high molecular weight protein 2 (Cytadherence| accessory protein 2) Length = 1818 Score = 30.4 bits (67), Expect = 4.8 Identities = 13/31 (41%), Positives = 22/31 (70%) Frame = -2 Query: 456 RLVQNYAIDLQEGDAIVTASDGLFDNVYDHE 364 RL QN+++D QE DA++ D L++ +Y+ E Sbjct: 183 RLQQNHSLDQQERDALLYEVDHLYNELYELE 213
>POLG_HCV6A (Q5I2N3) Genome polyprotein [Contains: Core protein p21 (Capsid| protein C) (p21); Core protein p19; Envelope glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine protease/N Length = 3018 Score = 30.4 bits (67), Expect = 4.8 Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 4/76 (5%) Frame = -2 Query: 471 GVDPSRLVQNYAIDLQEGDAIVTASDGLFDNVYDHEVA--SIVSKSLEA--DRKPTEIAE 304 GVD S + + + + DA++T G FD+V D VA +V SL+ + T + + Sbjct: 1424 GVDVSVIPTSGDVVICATDALMTGYTGDFDSVIDCNVAVTQVVDFSLDPTFSIETTTVPQ 1483 Query: 303 LLAARAKEVGRSGSGR 256 +R++ GR+G G+ Sbjct: 1484 DAVSRSQRRGRTGRGK 1499
>POLG_HCVEU (O39927) Genome polyprotein [Contains: Core protein p21 (Capsid| protein C) (p21); Core protein p19; Envelope glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine protease/N Length = 3017 Score = 30.0 bits (66), Expect = 6.2 Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 4/76 (5%) Frame = -2 Query: 471 GVDPSRLVQNYAIDLQEGDAIVTASDGLFDNVYDHEVA--SIVSKSLEA--DRKPTEIAE 304 GVD S + + + + DA++T G FD+V D VA +V SL+ + T + + Sbjct: 1423 GVDVSVIPTSGDVVVCATDALMTGYTGDFDSVIDCNVAVTQVVDFSLDPTFSIETTTVPQ 1482 Query: 303 LLAARAKEVGRSGSGR 256 +R++ GR+G G+ Sbjct: 1483 DAVSRSQRRGRTGRGK 1498
>CYDD_ECOLI (P29018) Transport ATP-binding protein cydD| Length = 588 Score = 29.6 bits (65), Expect = 8.1 Identities = 23/74 (31%), Positives = 34/74 (45%) Frame = -2 Query: 426 QEGDAIVTASDGLFDNVYDHEVASIVSKSLEADRKPTEIAELLAARAKEVGRSGSGRSPF 247 Q G+A + ++D + + + S K+L P RA VGRSGSG+S Sbjct: 336 QRGEAELASTDPVTIEAEELFITSPEGKTLAG---PLNFTLPAGQRAVLVGRSGSGKSSL 392 Query: 246 SDAALAEGYLGYSG 205 +A G+L Y G Sbjct: 393 LNA--LSGFLSYQG 404
>PDP1_HUMAN (Q9P0J1) [Pyruvate dehydrogenase [lipoamide]]-phosphatase 1,| mitochondrial precursor (EC 3.1.3.43) (PDP 1) (Pyruvate dehydrogenase phosphatase, catalytic subunit 1) (PDPC 1) (Protein phosphatase 2C) Length = 537 Score = 29.6 bits (65), Expect = 8.1 Identities = 13/21 (61%), Positives = 15/21 (71%) Frame = -2 Query: 621 STVLVAHFDGQVLHVSNIGDS 559 +T VAH DG LHV+N GDS Sbjct: 272 ATACVAHVDGVDLHVANTGDS 292
>PDP1_RAT (O88483) [Pyruvate dehydrogenase [lipoamide]]-phosphatase 1,| mitochondrial precursor (EC 3.1.3.43) (PDP 1) (Pyruvate dehydrogenase phosphatase, catalytic subunit 1) (PDPC 1) (Protein phosphatase 2C) Length = 538 Score = 29.6 bits (65), Expect = 8.1 Identities = 13/21 (61%), Positives = 15/21 (71%) Frame = -2 Query: 621 STVLVAHFDGQVLHVSNIGDS 559 +T VAH DG LHV+N GDS Sbjct: 272 ATACVAHVDGVDLHVANTGDS 292
>PDP1_MOUSE (Q3UV70) [Pyruvate dehydrogenase [lipoamide]]-phosphatase 1,| mitochondrial precursor (EC 3.1.3.43) (PDP 1) (Pyruvate dehydrogenase phosphatase, catalytic subunit 1) (PDPC 1) (Protein phosphatase 2C) Length = 538 Score = 29.6 bits (65), Expect = 8.1 Identities = 13/21 (61%), Positives = 15/21 (71%) Frame = -2 Query: 621 STVLVAHFDGQVLHVSNIGDS 559 +T VAH DG LHV+N GDS Sbjct: 272 ATACVAHVDGVDLHVANTGDS 292
>PDP1_BOVIN (P35816) [Pyruvate dehydrogenase [lipoamide]]-phosphatase 1,| mitochondrial precursor (EC 3.1.3.43) (PDP 1) (Pyruvate dehydrogenase phosphatase, catalytic subunit 1) (PDPC 1) (Protein phosphatase 2C) Length = 538 Score = 29.6 bits (65), Expect = 8.1 Identities = 13/21 (61%), Positives = 15/21 (71%) Frame = -2 Query: 621 STVLVAHFDGQVLHVSNIGDS 559 +T VAH DG LHV+N GDS Sbjct: 272 ATACVAHVDGVDLHVANTGDS 292 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 95,106,037 Number of Sequences: 219361 Number of extensions: 1960612 Number of successful extensions: 5784 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 5602 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5779 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6143359464 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
