ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd13d11 |
|---|---|
| Clone Library Name | barley_pub |
>XFD1_XENLA (P33205) Protein XFD-1 (Pintallavis protein)| Length = 399 Score = 32.0 bits (71), Expect = 2.1 Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 2/85 (2%) Frame = +2 Query: 203 IHNL--LLHPTSFDPTTLKATMELLKSLPH*LSGRGSIQTTQSHSSGRSSGQPKNLLPVL 376 IHN+ +L SF P + + S+P+ +G T+ + G P+ ++ L Sbjct: 28 IHNMTNVLPSNSFLPNDVST---VTTSMPYMSNGLPGPVTSIQGNIGSLGSMPQGMVGSL 84 Query: 377 APPQETRRAGISPCPGQR*FERSSR 451 APP T + C G+ F+R R Sbjct: 85 APPPSTAAYPLGYCQGESEFQRDPR 109
>SMCA1_HUMAN (P28370) Probable global transcription activator SNF2L1 (EC 3.6.1.-)| (ATP-dependent helicase SMARCA1) (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 1) Length = 976 Score = 32.0 bits (71), Expect = 2.1 Identities = 19/63 (30%), Positives = 28/63 (44%) Frame = +3 Query: 303 GQSKQPNHTHQEDRVDNPKTFFPCLLHPKKHDEQELAHAPGNGDSSAPQGRRNWIGNEKF 482 G SK N+T +EDR F C+LH D + + +APQ R +W + Sbjct: 877 GTSKGKNYTEEEDR------FLICMLHKMGFDRENVYEELRQCVRNAPQFRFDWFIKSRT 930 Query: 483 GLE 491 +E Sbjct: 931 AME 933
>PHAAB_RHIME (Q52978) Probable K(+)/H(+) antiporter subunit A/B (pH adaptation| potassium efflux system protein A/B) (Pha system subunit A/B) Length = 999 Score = 31.2 bits (69), Expect = 3.5 Identities = 26/72 (36%), Positives = 33/72 (45%), Gaps = 6/72 (8%) Frame = -3 Query: 500 TVQFQSEFFIPN------PISTALRSARITVARGMG*FLLVVFLGVEQAREEGFWVVHSI 339 + QF F++P+ P+S L SA + A G FLLV F V E FW+V Sbjct: 250 SAQFPFHFWLPHAMAAPTPVSAYLHSATMVKA---GVFLLVRFWPVMAGTEAWFWIV--- 303 Query: 338 FLMSVIGLFGLT 303 GL GLT Sbjct: 304 ------GLAGLT 309
>ISWI_DROME (Q24368) Chromatin remodelling complex ATPase chain Iswi (EC 3.6.1.-)| (Protein imitation swi) (Nucleosome remodeling factor 140 kDa subunit) (NURF-140) (CHRAC 140 kDa subunit) Length = 1027 Score = 31.2 bits (69), Expect = 3.5 Identities = 19/64 (29%), Positives = 29/64 (45%) Frame = +3 Query: 303 GQSKQPNHTHQEDRVDNPKTFFPCLLHPKKHDEQELAHAPGNGDSSAPQGRRNWIGNEKF 482 G +K N+T EDR F C+LH D++ + ++PQ R +W + Sbjct: 895 GNNKGKNYTEIEDR------FLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRT 948 Query: 483 GLEL 494 LEL Sbjct: 949 ALEL 952
>YFH3_YEAST (P43587) Hypothetical 18.2 kDa protein in NIC96-MPR1 intergenic| region Length = 155 Score = 30.8 bits (68), Expect = 4.6 Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 6/89 (6%) Frame = +3 Query: 231 ALIQLR*-RPPWSS*KACPTSSVGGGQSKQPNHTHQEDRVDNP-----KTFFPCLLHPKK 392 A++QLR + P S +A PT + N +E+ +DN KT C+ HP+ Sbjct: 28 AVLQLRATQDPPRSQEAMPT---------RHNVRWEENVIDNENMNKKKTKICCIFHPQN 78 Query: 393 HDEQELAHAPGNGDSSAPQGRRNWIGNEK 479 DE+E H + SS+ + NEK Sbjct: 79 EDEEECNHHSDDDGSSSSGSSSSESENEK 107
>NEIL3_HUMAN (Q8TAT5) Endonuclease VIII-like 3 (Nei-like 3) (DNA glycosylase| FPG2) Length = 605 Score = 30.8 bits (68), Expect = 4.6 Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 2/66 (3%) Frame = -2 Query: 429 RCPGHG-LIPARRVSWGGASTGRRFLGCPLDLPDECDWVVWID-PLPLS*WGKLFRSSMV 256 RC H L R V G + GR+F CPL +C + W D P GK RS+M Sbjct: 506 RCSKHNRLCILRVVRKDGENKGRQFYACPLPREAQCGFFEWADLSFPFCNHGK--RSTMK 563 Query: 255 AFNVVG 238 +G Sbjct: 564 TVLKIG 569
>TOP3A_DROME (Q9NG98) DNA topoisomerase 3-alpha (EC 5.99.1.2) (DNA topoisomerase| III alpha) Length = 1250 Score = 30.0 bits (66), Expect = 7.9 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 2/41 (4%) Frame = -2 Query: 405 PARR--VSWGGASTGRRFLGCPLDLPDECDWVVWIDPLPLS 289 PAR+ V G + GR + CP PDEC++ W D P S Sbjct: 1041 PARQNTVRKNGPNLGRLYYKCPK--PDECNFFQWADEPPSS 1079
>CRTI_SOYBN (P28553) Phytoene dehydrogenase, chloroplast precursor (EC| 1.14.99.-) (Phytoene desaturase) Length = 570 Score = 30.0 bits (66), Expect = 7.9 Identities = 30/114 (26%), Positives = 43/114 (37%), Gaps = 8/114 (7%) Frame = -1 Query: 520 LRWMDAELCSSNPN-------FSFPIQFLRP*GALESPLPGAWANSCSSCFLGWSKHGKK 362 L+W + + + PN F FP L SPL G WA ++ L W + K Sbjct: 175 LQWKEHSMIFAMPNKPGEFSRFDFP-------EVLPSPLNGIWAILRNNEMLTWPEKVKF 227 Query: 361 VFGLSTRSS**V*LGCLD*PPPTELVGQAFQELHGGL-*RSWIKASRMEKKVMD 203 GL P L GQ + E GL + W+K + ++V D Sbjct: 228 AIGLL----------------PAMLGGQPYVEAQDGLSVQEWMKKQGVPERVAD 265
>ISW1_CAEEL (P41877) Chromatin remodelling complex ATPase chain isw-1 (EC| 3.6.1.-) Length = 1009 Score = 30.0 bits (66), Expect = 7.9 Identities = 18/64 (28%), Positives = 27/64 (42%) Frame = +3 Query: 303 GQSKQPNHTHQEDRVDNPKTFFPCLLHPKKHDEQELAHAPGNGDSSAPQGRRNWIGNEKF 482 G +K +T +EDR F C H HD++ + APQ R +W + Sbjct: 896 GTNKGKTYTEEEDR------FLVCETHRLGHDKENVFEELRQSVRMAPQFRFDWFLKSRT 949 Query: 483 GLEL 494 +EL Sbjct: 950 AMEL 953
>SAS4_CAEBR (Q60JJ0) Spindle assembly abnormal protein 4| Length = 761 Score = 30.0 bits (66), Expect = 7.9 Identities = 15/50 (30%), Positives = 21/50 (42%) Frame = +3 Query: 306 QSKQPNHTHQEDRVDNPKTFFPCLLHPKKHDEQELAHAPGNGDSSAPQGR 455 QS +D D+P P L+ P+ H Q L+ +G PQ R Sbjct: 178 QSTPKGSLRHDDLSDDPTFLPPPLVPPRNHSPQTLSSLASSGSLDTPQAR 227 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 109,232,397 Number of Sequences: 219361 Number of extensions: 2300145 Number of successful extensions: 6227 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 5944 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6223 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 7762912789 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
