| Clone Name | rbasd13c21 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_472912.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2217 Score = 218 bits (110), Expect = 2e-53 Identities = 433/541 (80%) Strand = Plus / Minus Query: 151 gagagatcaaatgccagcaagccatcatcagaatgactgaactctacctcattcgcatca 210 ||||||||||| ||||| ||||||||||| | || |||||||||| |||| | ||||| Sbjct: 2159 gagagatcaaaggccaggaagccatcatctgtgtgtttgaactctacttcatgctcatca 2100 Query: 211 actctgcagagtgccggcctagcggatgaatacgccccaaaacgtcctggccctcggcat 270 || ||||| | | ||||||| | | ||||||||||||||| || ||||||||||||||| Sbjct: 2099 acactgcaaatttccggcctggttgctgaatacgccccaaaccgacctggccctcggcat 2040 Query: 271 ttgatctgaactgtcgtagctgaagaatcaactgtgcatctgatactgtcgagtgcgcca 330 | |||||||| ||| | ||||| ||||| |||||| ||| | ||||| || ||| Sbjct: 2039 tggatctgaattgtgatctctgaacaatcacctgtgctcgtgacgttttcgagcgcacca 1980 Query: 331 ccggagttgaacatgtttagcagtccaagtggcgcaaacccaacagccccaccgtaaacc 390 || |||||| ||||||| | ||||||||| || |||||| |||| ||||| ||||| Sbjct: 1979 cctgagttgtacatgttaaccagtccaagaggagcaaactgaacaaagccaccaaaaacc 1920 Query: 391 tgtatcggtgatatggtatagatctcacatgccatggtgaccaatgaaagctccaaactt 450 | |||| | | ||||||||| |||| ||||| ||| || ||| |||| ||||| | | Sbjct: 1919 tttatcagcgctatggtatatatcttacatgtcatagtagacaaggaaacctccatagtc 1860 Query: 451 tggtgcttctggagccttgatagagaacatgaattgaaagcatatactgcagtctctcca 510 || |||||||| |||||||| |||||||||||||| |||||| |||||||||||||||| Sbjct: 1859 tgatgcttctgaagccttgagagagaacatgaattaaaagcaaatactgcagtctctccg 1800 Query: 511 ttccaatcatcgccagtaatctcctcaagagactctacatctgatggcgagagatggcca 570 ||||||||||| |||| ||||||||||| |||| ||||||||||| ||||||| ||| Sbjct: 1799 ttccaatcatccccagctatctcctcaagtaactccacatctgatggggagagatcacca 1740 Query: 571 gttatgttaacggttgtgggaacatgtgaaatttcttcgactaaccaagtccagtttcca 630 || ||| ||||| ||||||||||| | | |||||| ||| ||||||| |||||| Sbjct: 1739 gtgatgcagacggtagtgggaacatgagcattttctttcactggataagtccaatttcca 1680 Query: 631 gctccctgacaattgaatactccgacagcagcagacaaattgttcangttccatattttc 690 || |||||||| || || ||||||| | |||| || ||||||| ||||||||||||| Sbjct: 1679 gcaccctgacagttaaacactccgatgactccagaaaacttgttcaagttccatattttc 1620 Query: 691 a 691 | Sbjct: 1619 a 1619
>dbj|AK099817.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013100E13, full insert sequence Length = 2449 Score = 218 bits (110), Expect = 2e-53 Identities = 433/541 (80%) Strand = Plus / Minus Query: 151 gagagatcaaatgccagcaagccatcatcagaatgactgaactctacctcattcgcatca 210 ||||||||||| ||||| ||||||||||| | || |||||||||| |||| | ||||| Sbjct: 2183 gagagatcaaaggccaggaagccatcatctgtgtgtttgaactctacttcatgctcatca 2124 Query: 211 actctgcagagtgccggcctagcggatgaatacgccccaaaacgtcctggccctcggcat 270 || ||||| | | ||||||| | | ||||||||||||||| || ||||||||||||||| Sbjct: 2123 acactgcaaatttccggcctggttgctgaatacgccccaaaccgacctggccctcggcat 2064 Query: 271 ttgatctgaactgtcgtagctgaagaatcaactgtgcatctgatactgtcgagtgcgcca 330 | |||||||| ||| | ||||| ||||| |||||| ||| | ||||| || ||| Sbjct: 2063 tggatctgaattgtgatctctgaacaatcacctgtgctcgtgacgttttcgagcgcacca 2004 Query: 331 ccggagttgaacatgtttagcagtccaagtggcgcaaacccaacagccccaccgtaaacc 390 || |||||| ||||||| | ||||||||| || |||||| |||| ||||| ||||| Sbjct: 2003 cctgagttgtacatgttaaccagtccaagaggagcaaactgaacaaagccaccaaaaacc 1944 Query: 391 tgtatcggtgatatggtatagatctcacatgccatggtgaccaatgaaagctccaaactt 450 | |||| | | ||||||||| |||| ||||| ||| || ||| |||| ||||| | | Sbjct: 1943 tttatcagcgctatggtatatatcttacatgtcatagtagacaaggaaacctccatagtc 1884 Query: 451 tggtgcttctggagccttgatagagaacatgaattgaaagcatatactgcagtctctcca 510 || |||||||| |||||||| |||||||||||||| |||||| |||||||||||||||| Sbjct: 1883 tgatgcttctgaagccttgagagagaacatgaattaaaagcaaatactgcagtctctccg 1824 Query: 511 ttccaatcatcgccagtaatctcctcaagagactctacatctgatggcgagagatggcca 570 ||||||||||| |||| ||||||||||| |||| ||||||||||| ||||||| ||| Sbjct: 1823 ttccaatcatccccagctatctcctcaagtaactccacatctgatggggagagatcacca 1764 Query: 571 gttatgttaacggttgtgggaacatgtgaaatttcttcgactaaccaagtccagtttcca 630 || ||| ||||| ||||||||||| | | |||||| ||| ||||||| |||||| Sbjct: 1763 gtgatgcagacggtagtgggaacatgagcattttctttcactggataagtccaatttcca 1704 Query: 631 gctccctgacaattgaatactccgacagcagcagacaaattgttcangttccatattttc 690 || |||||||| || || ||||||| | |||| || ||||||| ||||||||||||| Sbjct: 1703 gcaccctgacagttaaacactccgatgactccagaaaacttgttcaagttccatattttc 1644 Query: 691 a 691 | Sbjct: 1643 a 1643
>dbj|AK100197.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023037L18, full insert sequence Length = 2606 Score = 210 bits (106), Expect = 5e-51 Identities = 432/541 (79%) Strand = Plus / Minus Query: 151 gagagatcaaatgccagcaagccatcatcagaatgactgaactctacctcattcgcatca 210 ||||||||||| ||||| ||||||||||| | || |||||||||| |||| | ||||| Sbjct: 2227 gagagatcaaaggccaggaagccatcatctgtgtgtttgaactctacttcatgctcatca 2168 Query: 211 actctgcagagtgccggcctagcggatgaatacgccccaaaacgtcctggccctcggcat 270 || ||||| | | ||||||| | | ||||||||||||||| || ||||||||||||||| Sbjct: 2167 acactgcaaatttccggcctggttgctgaatacgccccaaaccgacctggccctcggcat 2108 Query: 271 ttgatctgaactgtcgtagctgaagaatcaactgtgcatctgatactgtcgagtgcgcca 330 | |||||||| ||| | ||||| ||||| |||||| ||| | ||||| || ||| Sbjct: 2107 tggatctgaattgtgatctctgaacaatcacctgtgctcgtgacgttttcgagcgcacca 2048 Query: 331 ccggagttgaacatgtttagcagtccaagtggcgcaaacccaacagccccaccgtaaacc 390 || |||||| ||||||| | ||||||||| || |||||| |||| ||||| ||||| Sbjct: 2047 cctgagttgtacatgttaaccagtccaagaggagcaaactgaacaaagccaccaaaaacc 1988 Query: 391 tgtatcggtgatatggtatagatctcacatgccatggtgaccaatgaaagctccaaactt 450 | |||| | | ||||||||| |||| ||||| ||| || ||| |||| ||||| | | Sbjct: 1987 tttatcagcgctatggtatatatcttacatgtcatagtagacaaggaaacctccatagtc 1928 Query: 451 tggtgcttctggagccttgatagagaacatgaattgaaagcatatactgcagtctctcca 510 || |||||||| |||||||| |||||||||||||| |||||| |||||||||||||||| Sbjct: 1927 tgatgcttctgaagccttgagagagaacatgaattaaaagcaaatactgcagtctctccg 1868 Query: 511 ttccaatcatcgccagtaatctcctcaagagactctacatctgatggcgagagatggcca 570 ||||||| ||| |||| ||||||||||| |||| ||||||||||| ||||||| ||| Sbjct: 1867 ttccaattatccccagctatctcctcaagtaactccacatctgatggggagagatcacca 1808 Query: 571 gttatgttaacggttgtgggaacatgtgaaatttcttcgactaaccaagtccagtttcca 630 || ||| ||||| ||||||||||| | | |||||| ||| ||||||| |||||| Sbjct: 1807 gtgatgcagacggtagtgggaacatgagcattttctttcactggataagtccaatttcca 1748 Query: 631 gctccctgacaattgaatactccgacagcagcagacaaattgttcangttccatattttc 690 || |||||||| || || ||||||| | |||| || ||||||| ||||||||||||| Sbjct: 1747 gcaccctgacagttaaacactccgatgactccagaaaacttgttcaagttccatattttc 1688 Query: 691 a 691 | Sbjct: 1687 a 1687
>emb|AL606614.3|OSJN00047 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0011N17, complete sequence Length = 129498 Score = 119 bits (60), Expect = 1e-23 Identities = 176/215 (81%) Strand = Plus / Plus Query: 477 acatgaattgaaagcatatactgcagtctctccattccaatcatcgccagtaatctcctc 536 ||||||||| |||||| |||||||||||||||| ||||||||||| |||| |||||||| Sbjct: 41131 acatgaattaaaagcaaatactgcagtctctccgttccaatcatccccagctatctcctc 41190 Query: 537 aagagactctacatctgatggcgagagatggccagttatgttaacggttgtgggaacatg 596 ||| |||| ||||||||||| ||||||| ||||| ||| ||||| ||||||||||| Sbjct: 41191 aagtaactccacatctgatggggagagatcaccagtgatgcagacggtagtgggaacatg 41250 Query: 597 tgaaatttcttcgactaaccaagtccagtttccagctccctgacaattgaatactccgac 656 | | |||||| ||| ||||||| |||||||| |||||||| || || ||||||| Sbjct: 41251 agcattttctttcactggataagtccaatttccagcaccctgacagttaaacactccgat 41310 Query: 657 agcagcagacaaattgttcangttccatattttca 691 | |||| || ||||||| |||||||||||||| Sbjct: 41311 gactccagaaaacttgttcaagttccatattttca 41345 Score = 93.7 bits (47), Expect = 7e-16 Identities = 176/219 (80%) Strand = Plus / Plus Query: 151 gagagatcaaatgccagcaagccatcatcagaatgactgaactctacctcattcgcatca 210 ||||||||||| ||||| ||||||||||| | || |||||||||| |||| | ||||| Sbjct: 40519 gagagatcaaaggccaggaagccatcatctgtgtgtttgaactctacttcatgctcatca 40578 Query: 211 actctgcagagtgccggcctagcggatgaatacgccccaaaacgtcctggccctcggcat 270 || ||||| | | ||||||| | | ||||||||||||||| || ||||||||||||||| Sbjct: 40579 acactgcaaatttccggcctggttgctgaatacgccccaaaccgacctggccctcggcat 40638 Query: 271 ttgatctgaactgtcgtagctgaagaatcaactgtgcatctgatactgtcgagtgcgcca 330 | |||||||| ||| | ||||| ||||| |||||| ||| | ||||| || ||| Sbjct: 40639 tggatctgaattgtgatctctgaacaatcacctgtgctcgtgacgttttcgagcgcacca 40698 Query: 331 ccggagttgaacatgtttagcagtccaagtggcgcaaac 369 || |||||| ||||||| | ||||||||| || |||||| Sbjct: 40699 cctgagttgtacatgttaaccagtccaagaggagcaaac 40737
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 119 bits (60), Expect = 1e-23 Identities = 176/215 (81%) Strand = Plus / Plus Query: 477 acatgaattgaaagcatatactgcagtctctccattccaatcatcgccagtaatctcctc 536 ||||||||| |||||| |||||||||||||||| ||||||||||| |||| |||||||| Sbjct: 24044152 acatgaattaaaagcaaatactgcagtctctccgttccaatcatccccagctatctcctc 24044211 Query: 537 aagagactctacatctgatggcgagagatggccagttatgttaacggttgtgggaacatg 596 ||| |||| ||||||||||| ||||||| ||||| ||| ||||| ||||||||||| Sbjct: 24044212 aagtaactccacatctgatggggagagatcaccagtgatgcagacggtagtgggaacatg 24044271 Query: 597 tgaaatttcttcgactaaccaagtccagtttccagctccctgacaattgaatactccgac 656 | | |||||| ||| ||||||| |||||||| |||||||| || || ||||||| Sbjct: 24044272 agcattttctttcactggataagtccaatttccagcaccctgacagttaaacactccgat 24044331 Query: 657 agcagcagacaaattgttcangttccatattttca 691 | |||| || ||||||| |||||||||||||| Sbjct: 24044332 gactccagaaaacttgttcaagttccatattttca 24044366 Score = 93.7 bits (47), Expect = 7e-16 Identities = 176/219 (80%) Strand = Plus / Plus Query: 151 gagagatcaaatgccagcaagccatcatcagaatgactgaactctacctcattcgcatca 210 ||||||||||| ||||| ||||||||||| | || |||||||||| |||| | ||||| Sbjct: 24043540 gagagatcaaaggccaggaagccatcatctgtgtgtttgaactctacttcatgctcatca 24043599 Query: 211 actctgcagagtgccggcctagcggatgaatacgccccaaaacgtcctggccctcggcat 270 || ||||| | | ||||||| | | ||||||||||||||| || ||||||||||||||| Sbjct: 24043600 acactgcaaatttccggcctggttgctgaatacgccccaaaccgacctggccctcggcat 24043659 Query: 271 ttgatctgaactgtcgtagctgaagaatcaactgtgcatctgatactgtcgagtgcgcca 330 | |||||||| ||| | ||||| ||||| |||||| ||| | ||||| || ||| Sbjct: 24043660 tggatctgaattgtgatctctgaacaatcacctgtgctcgtgacgttttcgagcgcacca 24043719 Query: 331 ccggagttgaacatgtttagcagtccaagtggcgcaaac 369 || |||||| ||||||| | ||||||||| || |||||| Sbjct: 24043720 cctgagttgtacatgttaaccagtccaagaggagcaaac 24043758
>emb|AL442104.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0510A06, complete sequence Length = 90767 Score = 111 bits (56), Expect = 3e-21 Identities = 175/215 (81%) Strand = Plus / Plus Query: 477 acatgaattgaaagcatatactgcagtctctccattccaatcatcgccagtaatctcctc 536 ||||||||| |||||| |||||||||||||||| ||||||||||| |||| |||||||| Sbjct: 10393 acatgaattaaaagcaaatactgcagtctctccgttccaatcatccccagctatctcctc 10452 Query: 537 aagagactctacatctgatggcgagagatggccagttatgttaacggttgtgggaacatg 596 ||| |||| ||||||||||| ||||||| ||||| ||| ||||| ||||||||||| Sbjct: 10453 aagtaactccacatctgatggggagagatcaccagtgatgcagacggtagtgggaacatg 10512 Query: 597 tgaaatttcttcgactaaccaagtccagtttccagctccctgacaattgaatactccgac 656 | | |||||| ||| || |||| |||||||| |||||||| || || ||||||| Sbjct: 10513 agcattttctttcactggataaatccaatttccagcaccctgacagttaaacactccgat 10572 Query: 657 agcagcagacaaattgttcangttccatattttca 691 | |||| || ||||||| |||||||||||||| Sbjct: 10573 gactccagaaaacttgttcaagttccatattttca 10607 Score = 93.7 bits (47), Expect = 7e-16 Identities = 176/219 (80%) Strand = Plus / Plus Query: 151 gagagatcaaatgccagcaagccatcatcagaatgactgaactctacctcattcgcatca 210 ||||||||||| ||||| ||||||||||| | || |||||||||| |||| | ||||| Sbjct: 9782 gagagatcaaaggccaggaagccatcatctgtgtgtttgaactctacttcatgctcatca 9841 Query: 211 actctgcagagtgccggcctagcggatgaatacgccccaaaacgtcctggccctcggcat 270 || ||||| | | ||||||| | | ||||||||||||||| || ||||||||||||||| Sbjct: 9842 acactgcaaatttccggcctggttgctgaatacgccccaaaccgacctggccctcggcat 9901 Query: 271 ttgatctgaactgtcgtagctgaagaatcaactgtgcatctgatactgtcgagtgcgcca 330 | |||||||| ||| | ||||| ||||| |||||| ||| | ||||| || ||| Sbjct: 9902 tggatctgaattgtgatctctgaacaatcacctgtgctcgtgacgttttcgagcgcacca 9961 Query: 331 ccggagttgaacatgtttagcagtccaagtggcgcaaac 369 || |||||| ||||||| | ||||||||| || |||||| Sbjct: 9962 cctgagttgtacatgttaaccagtccaagaggagcaaac 10000
>gb|AY111353.1| Zea mays CL37737_-1 mRNA sequence Length = 619 Score = 91.7 bits (46), Expect = 3e-15 Identities = 72/81 (88%) Strand = Plus / Plus Query: 446 aactttggtgcttctggagccttgatagagaacatgaattgaaagcatatactgcagtct 505 |||||||| | ||||| |||||||| |||||||||||| |||||||||||||||||||| Sbjct: 489 aactttggngtttctgaagccttgaaagagaacatgaaccgaaagcatatactgcagtct 548 Query: 506 ctccattccaatcatcgccag 526 | |||||||| ||||| |||| Sbjct: 549 ccccattccagtcatcaccag 569 Score = 89.7 bits (45), Expect = 1e-14 Identities = 111/133 (83%) Strand = Plus / Plus Query: 237 tgaatacgccccaaaacgtcctggccctcggcatttgatctgaactgtcgtagctgaaga 296 ||||||||||||||| || ||||| ||||||||| | || |||||||||||||||||||| Sbjct: 280 tgaatacgccccaaaccgccctggtcctcggcatcttatatgaactgtcgtagctgaaga 339 Query: 297 atcaactgtgcatctgatactgtcgagtgcgccaccggagttgaacatgtttagcagtcc 356 ||| | || | ||| |||| ||||| ||||||||||||||||||| | |||||| Sbjct: 340 atctgcaacgcttgaaatattgtcaagtgcaccaccggagttgaacatgtcgatcagtcc 399 Query: 357 aagtggcgcaaac 369 ||| ||||||||| Sbjct: 400 aagaggcgcaaac 412
>gb|BT024038.1| Zea mays clone EL01N0428D04 mRNA sequence Length = 1868 Score = 52.0 bits (26), Expect = 0.002 Identities = 55/65 (84%) Strand = Plus / Minus Query: 627 tccagctccctgacaattgaatactccgacagcagcagacaaattgttcangttccatat 686 ||||||||||||||||||||| ||||| | || ||| |||||||||| ||||||||| Sbjct: 1793 tccagctccctgacaattgaacactccaatgacaccagtgaaattgttcaagttccatat 1734 Query: 687 tttca 691 |||| Sbjct: 1733 cttca 1729
>emb|CT025674.13| Mouse DNA sequence from clone RP24-364I17 on chromosome 13, complete sequence Length = 117646 Score = 44.1 bits (22), Expect = 0.61 Identities = 22/22 (100%) Strand = Plus / Plus Query: 112 atctctatgttcctgagtctgg 133 |||||||||||||||||||||| Sbjct: 29652 atctctatgttcctgagtctgg 29673
>gb|AC114699.5| Rattus norvegicus 19 BAC CH230-235A3 (Children's Hospital Oakland Research Institute) complete sequence Length = 224930 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 612 taaccaagtccagtttccagc 632 ||||||||||||||||||||| Sbjct: 76433 taaccaagtccagtttccagc 76413
>gb|AC115889.13| Mus musculus chromosome 3, clone RP24-409N2, complete sequence Length = 166218 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 130 ctggtgtgggaagatccatct 150 ||||||||||||||||||||| Sbjct: 70958 ctggtgtgggaagatccatct 70938
>gb|AC093887.3| Homo sapiens BAC clone RP11-667D12 from 4, complete sequence Length = 192886 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 172 ccatcatcagaatgactgaac 192 ||||||||||||||||||||| Sbjct: 57243 ccatcatcagaatgactgaac 57223
>gb|AF497512.1| Zea mays alkaline alpha galactosidase 3 mRNA, complete cds Length = 2483 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 325 gcgccaccggagttgaacatg 345 ||||||||||||||||||||| Sbjct: 2127 gcgccaccggagttgaacatg 2107
>ref|NM_120071.1| Arabidopsis thaliana kinase AT4G39110 mRNA, complete cds Length = 2637 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 gaccaatgaaagctccaaac 448 |||||||||||||||||||| Sbjct: 1369 gaccaatgaaagctccaaac 1350
>gb|AF241730.2| Homo sapiens chromosome X clone RP5-958I11 map p11.4, complete sequence Length = 128427 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 152 agagatcaaatgccagcaag 171 |||||||||||||||||||| Sbjct: 65713 agagatcaaatgccagcaag 65732
>gb|AC107274.11| Rattus norvegicus 18 BAC CH230-207M17 (Children's Hospital Oakland Research Institute) complete sequence Length = 217066 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 tggtgtgggaagatccatct 150 |||||||||||||||||||| Sbjct: 1716 tggtgtgggaagatccatct 1697
>ref|XM_385392.1| Gibberella zeae PH-1 chromosome 3 hypothetical protein (FG05216.1) partial mRNA Length = 5268 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 450 ttggtgcttctggagccttgatag 473 |||||||||||| ||||||||||| Sbjct: 4858 ttggtgcttctgcagccttgatag 4835
>gb|AC127594.3| Mus musculus BAC clone RP23-44G8 from chromosome 7, complete sequence Length = 209828 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 613 aaccaagtccagtttccagc 632 |||||||||||||||||||| Sbjct: 56940 aaccaagtccagtttccagc 56921
>gb|AC131714.4| Mus musculus BAC clone RP23-179L6 from chromosome 18, complete sequence Length = 193005 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 tggtgtgggaagatccatct 150 |||||||||||||||||||| Sbjct: 79578 tggtgtgggaagatccatct 79597
>ref|XM_737465.1| Plasmodium chabaudi chabaudi hypothetical protein (PC000685.01.0) partial mRNA Length = 2622 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 107 agagaatctctatgttcctg 126 |||||||||||||||||||| Sbjct: 2590 agagaatctctatgttcctg 2571
>emb|AL359073.25| Human DNA sequence from clone RP11-432F4 on chromosome 9 Contains the 5' end of the gene for regulator of differentiation 1 (ROD1), a ribosomal protein L32 (RPL32) pseudogene and a CpG island.n, complete sequence Length = 64850 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 113 tctctatgttcctgagtctggtgt 136 |||||||||| ||||||||||||| Sbjct: 9277 tctctatgttgctgagtctggtgt 9254
>gb|AC158934.4| Mus musculus chromosome 3, clone RP23-218L17, complete sequence Length = 194631 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 tggtgtgggaagatccatct 150 |||||||||||||||||||| Sbjct: 129108 tggtgtgggaagatccatct 129089
>gb|AC165083.2| Mus musculus BAC clone RP23-411I6 from chromosome 18, complete sequence Length = 208109 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 tggtgtgggaagatccatct 150 |||||||||||||||||||| Sbjct: 53655 tggtgtgggaagatccatct 53636
>emb|AL161594.2|ATCHRIV90 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 90 Length = 198987 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 429 gaccaatgaaagctccaaac 448 |||||||||||||||||||| Sbjct: 137907 gaccaatgaaagctccaaac 137926
>emb|AL050351.1|ATT22F8 Arabidopsis thaliana DNA chromosome 4, BAC clone T22F8 (ESSA project) Length = 89035 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 429 gaccaatgaaagctccaaac 448 |||||||||||||||||||| Sbjct: 6443 gaccaatgaaagctccaaac 6462
>emb|AL035679.1|ATF19H22 Arabidopsis thaliana DNA chromosome 4, BAC clone F19H22 (ESSA project) Length = 100469 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 429 gaccaatgaaagctccaaac 448 |||||||||||||||||||| Sbjct: 99896 gaccaatgaaagctccaaac 99915
>dbj|AB226586.1| Aspergillus oryzae cDNA, contig sequence: AoEST3448 Length = 568 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 502 gtctctccattccaatcatc 521 |||||||||||||||||||| Sbjct: 129 gtctctccattccaatcatc 110
>gb|AC021241.10| Homo sapiens chromosome 18, clone RP11-350K6, complete sequence Length = 160748 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 482 aattgaaagcatatactgca 501 |||||||||||||||||||| Sbjct: 79351 aattgaaagcatatactgca 79370
>dbj|AP007155.1| Aspergillus oryzae RIB40 genomic DNA, SC003 Length = 4170692 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 502 gtctctccattccaatcatc 521 |||||||||||||||||||| Sbjct: 307283 gtctctccattccaatcatc 307264
>gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome Length = 5751492 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 636 ctgacaattgaatactccga 655 |||||||||||||||||||| Sbjct: 2269002 ctgacaattgaatactccga 2268983
>gb|AC102844.11| Mus musculus chromosome 3, clone RP24-389H4, complete sequence Length = 199088 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 tggtgtgggaagatccatct 150 |||||||||||||||||||| Sbjct: 5977 tggtgtgggaagatccatct 5996
>emb|AL133368.6|CNS01DUT Human chromosome 14 DNA sequence BAC R-436M15 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 163272 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 176 catcagaatgactgaactct 195 |||||||||||||||||||| Sbjct: 111617 catcagaatgactgaactct 111636 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,566,262 Number of Sequences: 3902068 Number of extensions: 5566262 Number of successful extensions: 167138 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 32 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 166967 Number of HSP's gapped (non-prelim): 165 length of query: 693 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 670 effective length of database: 17,143,297,704 effective search space: 11486009461680 effective search space used: 11486009461680 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)