ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd11p17 |
|---|---|
| Clone Library Name | barley_pub |
>RS28_MAIZE (P46302) 40S ribosomal protein S28| Length = 65 Score = 98.6 bits (244), Expect = 7e-21 Identities = 50/51 (98%), Positives = 50/51 (98%) Frame = -2 Query: 417 MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 265 MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPV EGDI Sbjct: 1 MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVCEGDI 51
>RS28_ARATH (P34789) 40S ribosomal protein S28| Length = 64 Score = 82.4 bits (202), Expect = 5e-16 Identities = 42/51 (82%), Positives = 46/51 (90%) Frame = -2 Query: 417 MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 265 MD+Q+K AVVVKVMGRTGSRGQVTQVRVKF D +R IMRNVKGPVREGD+ Sbjct: 1 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRFIMRNVKGPVREGDV 50
>RS28_ICTPU (Q90YP3) 40S ribosomal protein S28| Length = 69 Score = 75.9 bits (185), Expect = 5e-14 Identities = 35/47 (74%), Positives = 42/47 (89%) Frame = -2 Query: 405 VKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 265 +KLA V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGPVREGD+ Sbjct: 9 IKLARVTKVLGRTGSQGQCTQVRVEFMDDSNRSIIRNVKGPVREGDV 55
>RS28_BRARE (Q6PBK3) 40S ribosomal protein S28| Length = 69 Score = 75.9 bits (185), Expect = 5e-14 Identities = 35/47 (74%), Positives = 42/47 (89%) Frame = -2 Query: 405 VKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 265 +KLA V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGPVREGD+ Sbjct: 9 IKLARVTKVLGRTGSQGQCTQVRVEFMDDSNRSIIRNVKGPVREGDV 55
>RS28_KLUMA (P33286) 40S ribosomal protein S28 (S33)| Length = 67 Score = 75.1 bits (183), Expect = 8e-14 Identities = 37/49 (75%), Positives = 42/49 (85%) Frame = -2 Query: 411 TQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 265 T V LA V+KV+GRTGSRG VTQVRV+FL+D R I+RNVKGPVREGDI Sbjct: 5 TPVTLAKVIKVLGRTGSRGGVTQVRVEFLEDTTRTIVRNVKGPVREGDI 53
>RS28_KLULA (P33285) 40S ribosomal protein S28 (S33)| Length = 67 Score = 75.1 bits (183), Expect = 8e-14 Identities = 37/49 (75%), Positives = 42/49 (85%) Frame = -2 Query: 411 TQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 265 T V LA V+KV+GRTGSRG VTQVRV+FL+D R I+RNVKGPVREGDI Sbjct: 5 TPVTLAKVIKVLGRTGSRGGVTQVRVEFLEDTTRTIVRNVKGPVREGDI 53
>RS28_ASHGO (Q74ZD8) 40S ribosomal protein S28| Length = 67 Score = 74.7 bits (182), Expect = 1e-13 Identities = 37/49 (75%), Positives = 42/49 (85%) Frame = -2 Query: 411 TQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 265 T V LA V+KV+GRTGSRG VTQVRV+FLDD +R I+RNVKGPVRE DI Sbjct: 5 TPVTLAKVIKVLGRTGSRGGVTQVRVEFLDDTSRTIVRNVKGPVRENDI 53
>RS28_SCHPO (Q10421) 40S ribosomal protein S28 (S33)| Length = 68 Score = 74.3 bits (181), Expect = 1e-13 Identities = 37/52 (71%), Positives = 43/52 (82%) Frame = -2 Query: 420 SMDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 265 S VKLA V+KV+GRTGSRG VTQVRV+F+DD +R I+RNVKGPVRE DI Sbjct: 3 SSKVPVKLAKVIKVLGRTGSRGGVTQVRVEFMDDTSRSIIRNVKGPVREDDI 54
>RS28_RAT (P62859) 40S ribosomal protein S28| Length = 69 Score = 73.9 bits (180), Expect = 2e-13 Identities = 37/55 (67%), Positives = 45/55 (81%), Gaps = 4/55 (7%) Frame = -2 Query: 417 MDTQ----VKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 265 MDT +KLA V KV+GRTGS+GQ TQVRV+F+DD +R I+RNVKGPVREGD+ Sbjct: 1 MDTSRVQPIKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDV 55
>RS28_PIG (Q6QAT1) 40S ribosomal protein S28| Length = 69 Score = 73.9 bits (180), Expect = 2e-13 Identities = 37/55 (67%), Positives = 45/55 (81%), Gaps = 4/55 (7%) Frame = -2 Query: 417 MDTQ----VKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 265 MDT +KLA V KV+GRTGS+GQ TQVRV+F+DD +R I+RNVKGPVREGD+ Sbjct: 1 MDTSRVQPIKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDV 55
>RS28_MOUSE (P62858) 40S ribosomal protein S28| Length = 69 Score = 73.9 bits (180), Expect = 2e-13 Identities = 37/55 (67%), Positives = 45/55 (81%), Gaps = 4/55 (7%) Frame = -2 Query: 417 MDTQ----VKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 265 MDT +KLA V KV+GRTGS+GQ TQVRV+F+DD +R I+RNVKGPVREGD+ Sbjct: 1 MDTSRVQPIKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDV 55
>RS28_HUMAN (P62857) 40S ribosomal protein S28| Length = 69 Score = 73.9 bits (180), Expect = 2e-13 Identities = 37/55 (67%), Positives = 45/55 (81%), Gaps = 4/55 (7%) Frame = -2 Query: 417 MDTQ----VKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 265 MDT +KLA V KV+GRTGS+GQ TQVRV+F+DD +R I+RNVKGPVREGD+ Sbjct: 1 MDTSRVQPIKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDV 55
>RS28B_YEAST (P0C0X0) 40S ribosomal protein S28-B (S33) (YS27)| Length = 67 Score = 73.2 bits (178), Expect = 3e-13 Identities = 36/49 (73%), Positives = 42/49 (85%) Frame = -2 Query: 411 TQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 265 T V LA V+KV+GRTGSRG VTQVRV+FL+D +R I+RNVKGPVRE DI Sbjct: 5 TPVTLAKVIKVLGRTGSRGGVTQVRVEFLEDTSRTIVRNVKGPVRENDI 53
>RS28A_YEAST (Q3E7X9) 40S ribosomal protein S28-A (S33) (YS27)| Length = 67 Score = 73.2 bits (178), Expect = 3e-13 Identities = 36/49 (73%), Positives = 42/49 (85%) Frame = -2 Query: 411 TQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 265 T V LA V+KV+GRTGSRG VTQVRV+FL+D +R I+RNVKGPVRE DI Sbjct: 5 TPVTLAKVIKVLGRTGSRGGVTQVRVEFLEDTSRTIVRNVKGPVRENDI 53
>RS28_DROME (Q9W334) 40S ribosomal protein S28| Length = 65 Score = 72.8 bits (177), Expect = 4e-13 Identities = 36/51 (70%), Positives = 43/51 (84%) Frame = -2 Query: 417 MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 265 MD V A V+KV+GRTGS+GQ TQV+V+FL +QNR I+RNVKGPVREGDI Sbjct: 1 MDKPVVWARVMKVLGRTGSQGQCTQVKVEFLGEQNRQIIRNVKGPVREGDI 51
>RS28_CANGA (Q6FLC3) 40S ribosomal protein S28| Length = 67 Score = 72.8 bits (177), Expect = 4e-13 Identities = 36/49 (73%), Positives = 42/49 (85%) Frame = -2 Query: 411 TQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 265 T V LA V+KV+GRTGSRG VTQVRV+FL+D +R I+RNVKGPVRE DI Sbjct: 5 TPVTLARVIKVLGRTGSRGGVTQVRVEFLEDTSRTIVRNVKGPVRENDI 53
>RS28_NEUCR (Q7S6W5) 40S ribosomal protein S28| Length = 68 Score = 72.4 bits (176), Expect = 5e-13 Identities = 36/52 (69%), Positives = 41/52 (78%) Frame = -2 Query: 420 SMDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 265 S VKL V +V+GRTGSRG VTQVRV+F+DDQ R I+RNVKGPVRE DI Sbjct: 3 SSKAPVKLVKVTRVLGRTGSRGGVTQVRVEFMDDQTRSIIRNVKGPVREDDI 54
>RS28_OSTOS (O61590) 40S ribosomal protein S28| Length = 66 Score = 69.7 bits (169), Expect = 3e-12 Identities = 37/52 (71%), Positives = 41/52 (78%), Gaps = 1/52 (1%) Frame = -2 Query: 417 MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQ-NRLIMRNVKGPVREGDI 265 MD VK A V K +GRTGS+GQ TQVRV+F+DD NR I RNVKGPVREGDI Sbjct: 1 MDKPVKPAXVTKNIGRTGSQGQCTQVRVEFMDDNGNRTINRNVKGPVREGDI 52
>RS28_CAEEL (Q95Y04) 40S ribosomal protein S28| Length = 65 Score = 68.6 bits (166), Expect = 8e-12 Identities = 35/49 (71%), Positives = 43/49 (87%), Gaps = 1/49 (2%) Frame = -2 Query: 408 QVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQ-NRLIMRNVKGPVREGDI 265 ++ LA V KV+GRTGS+GQ TQVRV+F++DQ NR I+RNVKGPVREGDI Sbjct: 3 KLTLARVTKVIGRTGSQGQCTQVRVEFINDQNNRSIIRNVKGPVREGDI 51
>RS28_SPOFR (Q962Q2) 40S ribosomal protein S28| Length = 65 Score = 67.4 bits (163), Expect = 2e-11 Identities = 33/51 (64%), Positives = 42/51 (82%) Frame = -2 Query: 417 MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 265 MD LA VVKV+GRTGS+GQ TQV+V+F+ + +R I+RNVKGPVR+GDI Sbjct: 1 MDKPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDI 51
>RS28_PAPDA (Q6EV21) 40S ribosomal protein S28| Length = 65 Score = 67.4 bits (163), Expect = 2e-11 Identities = 33/51 (64%), Positives = 42/51 (82%) Frame = -2 Query: 417 MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 265 MD LA VVKV+GRTGS+GQ TQV+V+F+ + +R I+RNVKGPVR+GDI Sbjct: 1 MDKPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDI 51
>RS28_BOMMO (Q6PS50) 40S ribosomal protein S28| Length = 65 Score = 67.4 bits (163), Expect = 2e-11 Identities = 33/51 (64%), Positives = 42/51 (82%) Frame = -2 Query: 417 MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 265 MD LA VVKV+GRTGS+GQ TQV+V+F+ + +R I+RNVKGPVR+GDI Sbjct: 1 MDKPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDI 51
>RS28_METKA (Q8TVE7) 30S ribosomal protein S28e| Length = 74 Score = 59.7 bits (143), Expect = 4e-09 Identities = 29/46 (63%), Positives = 38/46 (82%), Gaps = 2/46 (4%) Frame = -2 Query: 396 AVVVKVMGRTGSRGQVTQVRVKFLD--DQNRLIMRNVKGPVREGDI 265 A VV+++GRTG G+VTQV+V+ L+ D+ R+I RNVKGPVREGDI Sbjct: 15 AEVVEILGRTGMAGEVTQVKVRILEGPDKGRIITRNVKGPVREGDI 60
>RS28_PYRAE (Q8ZTA7) 30S ribosomal protein S28e| Length = 77 Score = 55.5 bits (132), Expect = 7e-08 Identities = 26/45 (57%), Positives = 37/45 (82%), Gaps = 2/45 (4%) Frame = -2 Query: 393 VVVKVMGRTGSRGQVTQVRVKFLD--DQNRLIMRNVKGPVREGDI 265 +VV+++GRTG G+VTQV++K L+ D+ R++ RNVKGPVR GDI Sbjct: 17 LVVQILGRTGIAGEVTQVKIKILEGRDKGRVLTRNVKGPVRLGDI 61
>RS28_PYRHO (P61030) 30S ribosomal protein S28e| Length = 71 Score = 54.7 bits (130), Expect = 1e-07 Identities = 26/46 (56%), Positives = 37/46 (80%), Gaps = 2/46 (4%) Frame = -2 Query: 396 AVVVKVMGRTGSRGQVTQVRVKFLD--DQNRLIMRNVKGPVREGDI 265 A V++++GRTG+ G VTQV+V+ L+ D+ R+I RNV+GPVR GDI Sbjct: 9 AEVIEIIGRTGTTGDVTQVKVRILEGRDKGRVIRRNVRGPVRVGDI 54
>RS28_PYRAB (P61029) 30S ribosomal protein S28e| Length = 71 Score = 54.7 bits (130), Expect = 1e-07 Identities = 26/46 (56%), Positives = 37/46 (80%), Gaps = 2/46 (4%) Frame = -2 Query: 396 AVVVKVMGRTGSRGQVTQVRVKFLD--DQNRLIMRNVKGPVREGDI 265 A V++++GRTG+ G VTQV+V+ L+ D+ R+I RNV+GPVR GDI Sbjct: 9 AEVIEIIGRTGTTGDVTQVKVRILEGRDKGRVIRRNVRGPVRVGDI 54
>RS28_NANEQ (P61031) 30S ribosomal protein S28e| Length = 88 Score = 54.7 bits (130), Expect = 1e-07 Identities = 29/46 (63%), Positives = 36/46 (78%), Gaps = 2/46 (4%) Frame = -2 Query: 396 AVVVKVMGRTGSRGQVTQVRVKFLD--DQNRLIMRNVKGPVREGDI 265 A VV+++GRTG+ G+VTQV V+ L+ D RLI RNVKGPVR GDI Sbjct: 26 ARVVEIVGRTGTTGEVTQVIVEILEGKDAGRLIRRNVKGPVRVGDI 71
>RS28_PYRFU (Q8U159) 30S ribosomal protein S28e| Length = 71 Score = 54.3 bits (129), Expect = 2e-07 Identities = 26/46 (56%), Positives = 37/46 (80%), Gaps = 2/46 (4%) Frame = -2 Query: 396 AVVVKVMGRTGSRGQVTQVRVKFLD--DQNRLIMRNVKGPVREGDI 265 A V++++GRTG+ G VTQV+V+ L+ D+ R+I RNV+GPVR GDI Sbjct: 9 AEVIEIIGRTGTTGDVTQVKVRILEGRDKGRVIRRNVRGPVRIGDI 54
>RS28_PYRKO (Q5JGR4) 30S ribosomal protein S28e| Length = 70 Score = 53.9 bits (128), Expect = 2e-07 Identities = 27/46 (58%), Positives = 36/46 (78%), Gaps = 2/46 (4%) Frame = -2 Query: 396 AVVVKVMGRTGSRGQVTQVRVKFLD--DQNRLIMRNVKGPVREGDI 265 A V++++GRTG G VTQV+V+ L+ D+ R+I RNVKGPVR GDI Sbjct: 8 AEVIEIVGRTGVTGGVTQVKVRILEGRDKGRVIRRNVKGPVRVGDI 53
>RS28_SULSO (Q980Q5) 30S ribosomal protein S28e| Length = 83 Score = 53.5 bits (127), Expect = 3e-07 Identities = 26/46 (56%), Positives = 36/46 (78%), Gaps = 2/46 (4%) Frame = -2 Query: 396 AVVVKVMGRTGSRGQVTQVRVKFLD--DQNRLIMRNVKGPVREGDI 265 A V++++ RTG G+VTQVRV+ L+ D+ R++ RNVKGPVR GDI Sbjct: 21 AEVIQILDRTGVTGEVTQVRVRVLEGRDKGRILTRNVKGPVRVGDI 66
>RS28_SULTO (Q975Z8) 30S ribosomal protein S28e| Length = 83 Score = 53.1 bits (126), Expect = 3e-07 Identities = 26/46 (56%), Positives = 36/46 (78%), Gaps = 2/46 (4%) Frame = -2 Query: 396 AVVVKVMGRTGSRGQVTQVRVKFLD--DQNRLIMRNVKGPVREGDI 265 A V++++ RTG G+VTQVRV+ L+ D+ R++ RNVKGPVR GDI Sbjct: 21 AEVIQILDRTGVTGEVTQVRVRVLEGRDKGRILTRNVKGPVRLGDI 66
>RS28_SULAC (Q4JAV1) 30S ribosomal protein S28e| Length = 84 Score = 53.1 bits (126), Expect = 3e-07 Identities = 26/46 (56%), Positives = 36/46 (78%), Gaps = 2/46 (4%) Frame = -2 Query: 396 AVVVKVMGRTGSRGQVTQVRVKFLD--DQNRLIMRNVKGPVREGDI 265 A V++++ RTG G+VTQVRV+ L+ D+ R++ RNVKGPVR GDI Sbjct: 22 AEVIQILDRTGVTGEVTQVRVRVLEGRDKGRILTRNVKGPVRLGDI 67
>RS28_AERPE (Q9Y9A6) 30S ribosomal protein S28e| Length = 86 Score = 52.8 bits (125), Expect = 4e-07 Identities = 26/46 (56%), Positives = 36/46 (78%), Gaps = 2/46 (4%) Frame = -2 Query: 396 AVVVKVMGRTGSRGQVTQVRVKFLD--DQNRLIMRNVKGPVREGDI 265 A V++++GRTG G+VTQVRV+ L+ D+ R++ RNV GPVR GDI Sbjct: 24 AEVIQIIGRTGVTGEVTQVRVRILEGRDKGRILTRNVIGPVRIGDI 69
>RS28_THEVO (Q97BK7) 30S ribosomal protein S28e| Length = 69 Score = 51.6 bits (122), Expect = 1e-06 Identities = 27/53 (50%), Positives = 35/53 (66%), Gaps = 2/53 (3%) Frame = -2 Query: 417 MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLD--DQNRLIMRNVKGPVREGDI 265 M + A VV+++GRTG G+ T V+V+ L DQ R+I RNV GPVR GDI Sbjct: 1 MPNEATPAEVVEIIGRTGMTGEATTVKVRILSGRDQGRIIARNVLGPVRVGDI 53
>RS28_PICTO (Q6KZI6) 30S ribosomal protein S28e| Length = 69 Score = 51.2 bits (121), Expect = 1e-06 Identities = 26/53 (49%), Positives = 35/53 (66%), Gaps = 2/53 (3%) Frame = -2 Query: 417 MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLD--DQNRLIMRNVKGPVREGDI 265 M+ A VV++MGRTG G+ T V+V+ L DQ R+I RNV GPV+ GD+ Sbjct: 1 MEDDATPAEVVEIMGRTGMTGEATTVKVRVLSGKDQGRIIARNVLGPVKVGDV 53
>RS28_THEAC (P57711) 30S ribosomal protein S28e| Length = 69 Score = 50.4 bits (119), Expect = 2e-06 Identities = 27/53 (50%), Positives = 35/53 (66%), Gaps = 2/53 (3%) Frame = -2 Query: 417 MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLD--DQNRLIMRNVKGPVREGDI 265 M + A VV+++GRTG G+ T V+V+ L DQ R+I RNV GPVR GDI Sbjct: 1 MPNEATPAEVVEIIGRTGMTGEATTVKVRVLAGRDQGRIIARNVLGPVRVGDI 53
>RS28_METTH (O26356) 30S ribosomal protein S28e| Length = 68 Score = 50.4 bits (119), Expect = 2e-06 Identities = 24/46 (52%), Positives = 34/46 (73%), Gaps = 2/46 (4%) Frame = -2 Query: 396 AVVVKVMGRTGSRGQVTQVRVKFLD--DQNRLIMRNVKGPVREGDI 265 A V++V+ RTG G+V QV+ + LD D+ R++ RNV GP+REGDI Sbjct: 7 AEVIEVLKRTGMTGEVMQVKCRILDGRDKGRILTRNVMGPIREGDI 52
>RS28_ARCFU (O29493) 30S ribosomal protein S28e| Length = 71 Score = 50.4 bits (119), Expect = 2e-06 Identities = 26/52 (50%), Positives = 38/52 (73%), Gaps = 2/52 (3%) Frame = -2 Query: 414 DTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQN--RLIMRNVKGPVREGDI 265 + ++ A VV+++GRTG G+VTQV+V+ L +N R+I RNV GPV+ GDI Sbjct: 4 EEDIQPAEVVELVGRTGMHGEVTQVKVRVLAGENKGRVITRNVFGPVKVGDI 55
>RS28_METJA (P54065) 30S ribosomal protein S28e| Length = 75 Score = 48.9 bits (115), Expect = 6e-06 Identities = 25/46 (54%), Positives = 33/46 (71%), Gaps = 2/46 (4%) Frame = -2 Query: 396 AVVVKVMGRTGSRGQVTQVRVKFLD--DQNRLIMRNVKGPVREGDI 265 A V++V+GRTG G + QVR K L D R+++RNVKGPV+ GDI Sbjct: 13 AEVIEVIGRTGVTGGIIQVRCKILGGKDTGRVLVRNVKGPVKVGDI 58
>RS28_METMP (Q6LZI8) 30S ribosomal protein S28e| Length = 76 Score = 47.4 bits (111), Expect = 2e-05 Identities = 24/46 (52%), Positives = 32/46 (69%), Gaps = 2/46 (4%) Frame = -2 Query: 396 AVVVKVMGRTGSRGQVTQVRVKFLD--DQNRLIMRNVKGPVREGDI 265 A V++V GRTG G++ QVR K L D R++ RNVKGPV+ GD+ Sbjct: 13 AEVIQVNGRTGVTGEIFQVRCKILGGKDTGRILTRNVKGPVKLGDL 58
>RS28_HALSA (P57710) 30S ribosomal protein S28e| Length = 74 Score = 44.3 bits (103), Expect = 2e-04 Identities = 21/46 (45%), Positives = 32/46 (69%), Gaps = 2/46 (4%) Frame = -2 Query: 396 AVVVKVMGRTGSRGQVTQVRVKFLD--DQNRLIMRNVKGPVREGDI 265 A V++V+G+TG G+ QV+ + + +Q R+I RNV GPVR GD+ Sbjct: 13 AEVIEVVGKTGMHGEAMQVKCRIQEGGNQGRIITRNVLGPVRVGDV 58
>RS28_METMA (Q8PU75) 30S ribosomal protein S28e| Length = 73 Score = 42.7 bits (99), Expect = 5e-04 Identities = 21/46 (45%), Positives = 31/46 (67%), Gaps = 2/46 (4%) Frame = -2 Query: 396 AVVVKVMGRTGSRGQVTQVRVKFLD--DQNRLIMRNVKGPVREGDI 265 A V+ V+G TG G+ +Q++ + L+ D+ R+I RN GPVR GDI Sbjct: 12 AEVIDVIGNTGMHGEASQIQCRVLEGRDKGRVITRNCVGPVRIGDI 57
>RS28_METAC (Q8TQL8) 30S ribosomal protein S28e| Length = 76 Score = 42.7 bits (99), Expect = 5e-04 Identities = 21/46 (45%), Positives = 31/46 (67%), Gaps = 2/46 (4%) Frame = -2 Query: 396 AVVVKVMGRTGSRGQVTQVRVKFLD--DQNRLIMRNVKGPVREGDI 265 A V+ V+G TG G+ +Q++ + L+ D+ R+I RN GPVR GDI Sbjct: 15 AEVIDVIGNTGMHGEASQIQCRVLEGRDKGRVITRNCVGPVRIGDI 60
>CD2L6_MOUSE (Q8BWD8) Cell division cycle 2-like protein kinase 6 (EC 2.7.11.22)| (CDC2-related protein kinase 6) Length = 501 Score = 36.2 bits (82), Expect = 0.043 Identities = 20/45 (44%), Positives = 27/45 (60%) Frame = -1 Query: 445 PPPTAEERQHGYSGEACSGGEGDGPHGLQGSGDPGESQVPG*PEP 311 PP + + +G +G A +GG G G GLQ S DPG +QVP +P Sbjct: 397 PPQQSSAQTNGTAGGATAGGGGAGA-GLQHSQDPGLNQVPPNKKP 440
>CO1A2_MOUSE (Q01149) Collagen alpha-2(I) chain precursor| Length = 1372 Score = 35.4 bits (80), Expect = 0.073 Identities = 22/49 (44%), Positives = 28/49 (57%) Frame = -1 Query: 469 GSLRRRLRPPPTAEERQHGYSGEACSGGEGDGPHGLQGSGDPGESQVPG 323 GS+ + P P+ EE + G GEA S G GP GL+GS PG +PG Sbjct: 370 GSVGAQGPPGPSGEEGKRGSPGEAGSAGPA-GPPGLRGS--PGSRGLPG 415
>CO1A2_CANFA (O46392) Collagen alpha-2(I) chain precursor| Length = 1366 Score = 35.4 bits (80), Expect = 0.073 Identities = 23/54 (42%), Positives = 30/54 (55%) Frame = -1 Query: 469 GSLRRRLRPPPTAEERQHGYSGEACSGGEGDGPHGLQGSGDPGESQVPG*PEPS 308 GS + P P+ EE + G +GEA S G GP GL+GS PG +PG P+ Sbjct: 364 GSAGAQGPPGPSGEEGKRGPNGEAGSAGP-SGPPGLRGS--PGSRGLPGADGPA 414
>CO1A2_HUMAN (P08123) Collagen alpha-2(I) chain precursor| Length = 1366 Score = 34.3 bits (77), Expect = 0.16 Identities = 20/41 (48%), Positives = 25/41 (60%) Frame = -1 Query: 445 PPPTAEERQHGYSGEACSGGEGDGPHGLQGSGDPGESQVPG 323 P P+ EE + G +GEA S G GP GL+GS PG +PG Sbjct: 372 PGPSGEEGKRGPNGEAGSAGP-PGPPGLRGS--PGSRGLPG 409
>PRP_PIG (Q95JC9) Basic proline-rich protein precursor [Contains:| Proline-rich peptide SP-A (PRP-SP-A); Proline-rich peptide SP-B (PRP-SP-B); Parotid hormone (PH-Ab)] Length = 676 Score = 32.3 bits (72), Expect = 0.62 Identities = 23/64 (35%), Positives = 26/64 (40%) Frame = -1 Query: 448 RPPPTAEERQHGYSGEACSGGEGDGPHGLQGSGDPGESQVPG*PEPSHHEERQGTRP*GR 269 RPPP E + G+ + GDGP QG PG PG P P G P G Sbjct: 45 RPPPPEESQGEGH--QKRPRPPGDGPE--QGPAPPGARPPPGPPPPG--PPPPGPAPPGA 98 Query: 268 HPHP 257 P P Sbjct: 99 RPPP 102
>CO5A2_HUMAN (P05997) Collagen alpha-2(V) chain precursor| Length = 1496 Score = 32.3 bits (72), Expect = 0.62 Identities = 22/57 (38%), Positives = 23/57 (40%), Gaps = 1/57 (1%) Frame = -1 Query: 454 RLRPPPTAEERQHGYSGEACSGGEGDGPHGLQG-SGDPGESQVPG*PEPSHHEERQG 287 R RP P G GE G GP G QG G+PG PG P P H G Sbjct: 128 RGRPGPAGPPGSQGPRGERGPKGR-PGPRGPQGIDGEPGVPGQPGAPGPPGHPSHPG 183 Score = 30.0 bits (66), Expect = 3.1 Identities = 16/27 (59%), Positives = 18/27 (66%), Gaps = 1/27 (3%) Frame = -1 Query: 415 GYSGEACSGGEGDGPHGLQGS-GDPGE 338 G+ GEA GE GPHG+QG G PGE Sbjct: 471 GFKGEAGPKGE-PGPHGIQGPIGPPGE 496
>CO3A1_BOVIN (P04258) Collagen alpha-1(III) chain| Length = 1049 Score = 32.0 bits (71), Expect = 0.80 Identities = 19/36 (52%), Positives = 21/36 (58%), Gaps = 8/36 (22%) Frame = -1 Query: 394 SGGEGD----GPHGLQG----SGDPGESQVPG*PEP 311 SG +GD GP GLQG SG PGE+ PG P P Sbjct: 470 SGDKGDTGPPGPQGLQGLPGTSGPPGENGKPGEPGP 505
>CO1A2_CHICK (P02467) Collagen alpha-2(I) chain precursor (Fragments)| Length = 1362 Score = 32.0 bits (71), Expect = 0.80 Identities = 18/41 (43%), Positives = 24/41 (58%) Frame = -1 Query: 445 PPPTAEERQHGYSGEACSGGEGDGPHGLQGSGDPGESQVPG 323 P P+ EE + G +GE S G GP GL+G +PG +PG Sbjct: 370 PGPSGEEGKRGSNGEPGSAGP-PGPAGLRG--EPGSRGLPG 407 Score = 29.3 bits (64), Expect = 5.2 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 4/58 (6%) Frame = -1 Query: 445 PPPTAEERQHGYSGEACSGGEGDGPHGLQGS----GDPGESQVPG*PEPSHHEERQGT 284 P P G GE GP G +G G+PG + PG P PS E ++G+ Sbjct: 331 PGPAGPSGARGLVGEP-------GPAGAKGESGNKGEPGAAGPPGPPGPSGEEGKRGS 381
>CO9A3_CHICK (P32017) Collagen alpha-3(IX) chain precursor| Length = 675 Score = 31.6 bits (70), Expect = 1.0 Identities = 25/73 (34%), Positives = 32/73 (43%), Gaps = 1/73 (1%) Frame = -1 Query: 415 GYSGEACSGGEGDGPHGLQG-SGDPGESQVPG*PEPSHHEERQGTRP*GRHPHPA*V*AG 239 G GE GE GP G QG +G G +PG P P H+ QG P P Sbjct: 459 GQKGEPGKRGEL-GPKGAQGPNGTAGAPGIPGHPGPMGHQGEQGVPGITGKPGPP----- 512 Query: 238 GQEAALRSFFTVC 200 G+EA+ + +C Sbjct: 513 GKEASEQHIRELC 525
>CO1A1_MOUSE (P11087) Collagen alpha-1(I) chain precursor| Length = 1453 Score = 31.6 bits (70), Expect = 1.0 Identities = 22/60 (36%), Positives = 25/60 (41%), Gaps = 7/60 (11%) Frame = -1 Query: 445 PPPTAEERQHGYSGEACSGGEGDGPHGLQGS-------GDPGESQVPG*PEPSHHEERQG 287 P P E+ G G A S G GP G+ G G GE PG P PS +QG Sbjct: 917 PGPAGEKGSPGADGPAGSPGT-PGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQG 975
>CO3A1_RAT (P13941) Collagen alpha-1(III) chain precursor| Length = 1463 Score = 31.6 bits (70), Expect = 1.0 Identities = 22/57 (38%), Positives = 26/57 (45%), Gaps = 12/57 (21%) Frame = -1 Query: 445 PPPTAEERQHGYSGE----ACSGGEGD----GPHGLQG----SGDPGESQVPG*PEP 311 P P + + G G G +GD GP GLQG SG PGE+ PG P P Sbjct: 604 PGPAGKNGETGPQGPPGPTGAPGDKGDAGPPGPQGLQGIPGTSGPPGENGKPGEPGP 660
>CO8A1_HUMAN (P27658) Collagen alpha-1(VIII) chain precursor (Endothelial| collagen) Length = 744 Score = 31.2 bits (69), Expect = 1.4 Identities = 13/22 (59%), Positives = 14/22 (63%) Frame = -1 Query: 376 GPHGLQGSGDPGESQVPG*PEP 311 GPHGL G G PG +PG P P Sbjct: 200 GPHGLPGIGKPGGPGLPGQPGP 221
>FMR1_XENLA (P51113) Fragile X mental retardation protein 1 homolog (Protein| FMR-1) (FMRP) Length = 564 Score = 31.2 bits (69), Expect = 1.4 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%) Frame = -1 Query: 448 RPPPTAEERQHGYSGEACSGG-EGDGPHGLQGSGDPGESQVPG 323 RPPP +++ GY E CSG G P+ +G G G Sbjct: 383 RPPPNRPDKEKGYLSEDCSGTVRGSRPYSNRGRSRRGTGYASG 425
>ONEC2_HUMAN (O95948) One cut domain family member 2 (Transcription factor| ONECUT-2) (OC-2) Length = 485 Score = 30.8 bits (68), Expect = 1.8 Identities = 22/54 (40%), Positives = 23/54 (42%) Frame = -1 Query: 418 HGYSGEACSGGEGDGPHGLQGSGDPGESQVPG*PEPSHHEERQGTRP*GRHPHP 257 HG G GG G G G G G PG Q PS H R+G R R P P Sbjct: 14 HGARGGGSGGGGGGGGGG--GGGGPGHEQ-ELLASPSPHHARRGPRGSLRGPPP 64
>CO3A1_HUMAN (P02461) Collagen alpha-1(III) chain precursor| Length = 1466 Score = 30.4 bits (67), Expect = 2.3 Identities = 22/54 (40%), Positives = 24/54 (44%), Gaps = 9/54 (16%) Frame = -1 Query: 445 PPPTAEERQHGYSGEACSGGE-GD----GPHGLQG----SGDPGESQVPG*PEP 311 P E G G GG+ GD GP GLQG G PGE+ PG P P Sbjct: 608 PGKNGETGPQGPPGPTGPGGDKGDTGPPGPQGLQGLPGTGGPPGENGKPGEPGP 661 Score = 30.4 bits (67), Expect = 2.3 Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 2/44 (4%) Frame = -1 Query: 442 PPTAEERQHGYSGEACSGGEGD-GPHGLQG-SGDPGESQVPG*P 317 PPTA R +G+ G +GD GP G+ G +GDPG PG P Sbjct: 91 PPTAPTRPP--NGQGPQGPKGDPGPPGIPGRNGDPGIPGQPGSP 132
>CO4A5_HUMAN (P29400) Collagen alpha-5(IV) chain precursor| Length = 1685 Score = 30.4 bits (67), Expect = 2.3 Identities = 19/44 (43%), Positives = 21/44 (47%), Gaps = 1/44 (2%) Frame = -1 Query: 445 PPPTAEERQHGYSGEACSGGEGD-GPHGLQGSGDPGESQVPG*P 317 P P + HG GE +GD GP GL G PGE PG P Sbjct: 830 PGPIGQPGLHGIPGE-----KGDPGPPGLDVPGPPGERGSPGIP 868
>CO1A1_HUMAN (P02452) Collagen alpha-1(I) chain precursor| Length = 1464 Score = 30.4 bits (67), Expect = 2.3 Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 7/60 (11%) Frame = -1 Query: 445 PPPTAEERQHGYSGEACSGGEGDGPHGLQGS-------GDPGESQVPG*PEPSHHEERQG 287 P P E+ G G A + G GP G+ G G GE PG P PS +QG Sbjct: 928 PGPAGEKGSPGADGPAGAPGT-PGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQG 986
>ARI1B_HUMAN (Q8NFD5) AT-rich interactive domain-containing protein 1B (ARID| domain-containing protein 1B) (Osa homolog 2) (hOsa2) (p250R) (BRG1-binding protein hELD/OSA1) (BRG1-associated factor 250b) (BAF250B) Length = 2236 Score = 30.4 bits (67), Expect = 2.3 Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 2/66 (3%) Frame = -1 Query: 448 RPPPTAEERQHGYSGEACSGGEGD--GPHGLQGSGDPGESQVPG*PEPSHHEERQGTRP* 275 +P P E+ QHG + ++ +GG+ D GP L GD E P + G Sbjct: 149 QPGPDMEQPQHGGAKDSAAGGQADPPGPPLLSKPGD--EDDAP---------PKMGEPAG 197 Query: 274 GRHPHP 257 GR+ HP Sbjct: 198 GRYEHP 203
>PSA4_RAT (P21670) Proteasome subunit alpha type 4 (EC 3.4.25.1) (Proteasome| component C9) (Macropain subunit C9) (Multicatalytic endopeptidase complex subunit C9) (Proteasome subunit L) Length = 261 Score = 30.4 bits (67), Expect = 2.3 Identities = 15/45 (33%), Positives = 28/45 (62%) Frame = -2 Query: 465 ACAAASVLRQQPKKGSMDTQVKLAVVVKVMGRTGSRGQVTQVRVK 331 + AA S+L+Q K+G M + LA+ VKV+ +T +++ +V+ Sbjct: 168 SAAAVSMLKQDYKEGEMTLKSALALAVKVLNKTMDVSKLSAEKVE 212
>PSA4_MOUSE (Q9R1P0) Proteasome subunit alpha type 4 (EC 3.4.25.1) (Proteasome| component C9) (Macropain subunit C9) (Multicatalytic endopeptidase complex subunit C9) (Proteasome subunit L) Length = 261 Score = 30.4 bits (67), Expect = 2.3 Identities = 15/45 (33%), Positives = 28/45 (62%) Frame = -2 Query: 465 ACAAASVLRQQPKKGSMDTQVKLAVVVKVMGRTGSRGQVTQVRVK 331 + AA S+L+Q K+G M + LA+ VKV+ +T +++ +V+ Sbjct: 168 SAAAVSMLKQDYKEGEMTLKSALALAVKVLNKTMDVSKLSAEKVE 212
>CO1A1_CANFA (Q9XSJ7) Collagen alpha-1(I) chain precursor| Length = 1460 Score = 30.4 bits (67), Expect = 2.3 Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 7/60 (11%) Frame = -1 Query: 445 PPPTAEERQHGYSGEACSGGEGDGPHGLQGS-------GDPGESQVPG*PEPSHHEERQG 287 P P E+ G G A + G GP G+ G G GE PG P PS +QG Sbjct: 924 PGPAGEKGSPGADGPAGAPGT-PGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQG 982
>POL_HV2KR (Q74120) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin) (PR); Reverse trans Length = 1462 Score = 30.0 bits (66), Expect = 3.1 Identities = 13/33 (39%), Positives = 20/33 (60%) Frame = +1 Query: 262 EDVALTDGSLDVPHDETVLVIQELDSHLGHLTP 360 +D+ + D+ HD TVL ++EL + LG TP Sbjct: 795 DDILIASDRTDLEHDRTVLQLKELLNGLGFSTP 827
>DVL1L_HUMAN (P54792) Segment polarity protein dishevelled homolog DVL-1-like| (Dishevelled-1-like) (DSH homolog 1-like) Length = 670 Score = 30.0 bits (66), Expect = 3.1 Identities = 15/39 (38%), Positives = 21/39 (53%) Frame = -1 Query: 469 GSLRRRLRPPPTAEERQHGYSGEACSGGEGDGPHGLQGS 353 GS R LRPP +ER+ SG++ S + P G+ S Sbjct: 552 GSTRNTLRPPACEKERRAAGSGDSDSESDHTAPSGVGSS 590
>CO5A3_HUMAN (P25940) Collagen alpha-3(V) chain precursor| Length = 1745 Score = 30.0 bits (66), Expect = 3.1 Identities = 17/43 (39%), Positives = 20/43 (46%) Frame = -1 Query: 415 GYSGEACSGGEGDGPHGLQGSGDPGESQVPG*PEPSHHEERQG 287 G GE G+ GP SG+PG PG PS H R+G Sbjct: 1280 GSPGEKGDPGDVGGPGPPGASGEPGAPGPPGKRGPSGHMGREG 1322 Score = 28.9 bits (63), Expect = 6.8 Identities = 17/43 (39%), Positives = 23/43 (53%) Frame = -1 Query: 445 PPPTAEERQHGYSGEACSGGEGDGPHGLQGSGDPGESQVPG*P 317 P P E+ G G+A GE +GP G +G+ G+ VPG P Sbjct: 754 PGPRGEDGPEGPKGQAGQAGE-EGPPG--SAGEKGKLGVPGLP 793
>MYOZ1_BOVIN (Q8SQ24) Myozenin-1 (Calsarcin-2)| Length = 297 Score = 30.0 bits (66), Expect = 3.1 Identities = 23/80 (28%), Positives = 30/80 (37%) Frame = -1 Query: 427 ERQHGYSGEACSGGEGDGPHGLQGSGDPGESQVPG*PEPSHHEERQGTRP*GRHPHPA*V 248 ++QH + G G G GP G G+G PG H R G P + Sbjct: 128 DQQHHHQGSGSGSGSGSGP-GSGGAGGPG-----------GHSGRGGALPDNQ------- 168 Query: 247 *AGGQEAALRSFFTVCLSWE 188 AGG+ + F T WE Sbjct: 169 -AGGEGKHITVFKTYISPWE 187
>CO9A3_HUMAN (Q14050) Collagen alpha-3(IX) chain precursor| Length = 684 Score = 30.0 bits (66), Expect = 3.1 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 4/39 (10%) Frame = -1 Query: 415 GYSGEACSGGEGD----GPHGLQGSGDPGESQVPG*PEP 311 G +G G EGD GP G+ G+ G+ PG P P Sbjct: 605 GAAGAGLDGPEGDQGPQGPQGVPGTSKDGQDGAPGEPGP 643 Score = 29.3 bits (64), Expect = 5.2 Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 3/46 (6%) Frame = -1 Query: 445 PPPTAEERQHGYSGEACSGG--EGDGPHGLQGS-GDPGESQVPG*P 317 P P + Q G GEA G GP G G G PGE+ +PG P Sbjct: 37 PGPPGKPGQDGIDGEAGPPGLPGPPGPKGAPGKPGKPGEAGLPGLP 82
>CO4A5_CANFA (Q28247) Collagen alpha-5(IV) chain precursor| Length = 1691 Score = 30.0 bits (66), Expect = 3.1 Identities = 19/44 (43%), Positives = 20/44 (45%), Gaps = 1/44 (2%) Frame = -1 Query: 445 PPPTAEERQHGYSGEACSGGEGD-GPHGLQGSGDPGESQVPG*P 317 P P E HG GE +GD GP G G PGE PG P Sbjct: 830 PGPVGEPGLHGIPGE-----KGDPGPPGFDVLGPPGERGSPGIP 868
>VE4_HPV5B (P26550) Probable protein E4| Length = 245 Score = 30.0 bits (66), Expect = 3.1 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 8/58 (13%) Frame = -1 Query: 445 PPPTAEERQHGYSGEACSGGEGDGPHGLQG------SGDPG--ESQVPG*PEPSHHEE 296 PPPT +G+SG + +GP G +G GD G E P P P++ E Sbjct: 148 PPPTPPAPHNGHSGHGPKVQQPEGPEGREGHEEGAVGGDCGDEEGHPPPPPPPTNGHE 205
>PSA4_MACFA (Q4R932) Proteasome subunit alpha type 4 (EC 3.4.25.1)| Length = 261 Score = 30.0 bits (66), Expect = 3.1 Identities = 14/45 (31%), Positives = 28/45 (62%) Frame = -2 Query: 465 ACAAASVLRQQPKKGSMDTQVKLAVVVKVMGRTGSRGQVTQVRVK 331 + AA S+L+Q K+G M + LA+ +KV+ +T +++ +V+ Sbjct: 168 SAAAVSMLKQDYKEGEMTLKSALALAIKVLNKTMDVSKLSAEKVE 212
>PSA4_HUMAN (P25789) Proteasome subunit alpha type 4 (EC 3.4.25.1) (Proteasome| component C9) (Macropain subunit C9) (Multicatalytic endopeptidase complex subunit C9) (Proteasome subunit L) Length = 261 Score = 30.0 bits (66), Expect = 3.1 Identities = 14/45 (31%), Positives = 28/45 (62%) Frame = -2 Query: 465 ACAAASVLRQQPKKGSMDTQVKLAVVVKVMGRTGSRGQVTQVRVK 331 + AA S+L+Q K+G M + LA+ +KV+ +T +++ +V+ Sbjct: 168 SAAAVSMLKQDYKEGEMTLKSALALAIKVLNKTMDVSKLSAEKVE 212
>CO1A1_BOVIN (P02453) Collagen alpha-1(I) chain (Fragments)| Length = 779 Score = 30.0 bits (66), Expect = 3.1 Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 7/60 (11%) Frame = -1 Query: 445 PPPTAEERQHGYSGEACSGGEGDGPHGLQGS-------GDPGESQVPG*PEPSHHEERQG 287 P P E+ G G A + G GP G+ G G GE PG P PS +QG Sbjct: 490 PGPAGEKGAPGADGPAGAPGT-PGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQG 548
>XYLT2_PANTR (Q5QQ51) Xylosyltransferase 2 (EC 2.4.2.26) (Xylosyltransferase II)| (Peptide O-xylosyltransferase 2) Length = 865 Score = 29.6 bits (65), Expect = 4.0 Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 3/49 (6%) Frame = -1 Query: 445 PPPTAEERQH---GYSGEACSGGEGDGPHGLQGSGDPGESQVPG*PEPS 308 PPP A RQ+ +GEA G G PHG GS V G P+P+ Sbjct: 113 PPPEAPGRQNLSGAAAGEALVGAAGFPPHGDTGS-------VEGAPQPT 154
>XYLT2_HUMAN (Q9H1B5) Xylosyltransferase 2 (EC 2.4.2.26) (Xylosyltransferase II)| (xylT-II) (XT-II) (Peptide O-xylosyltransferase 1) Length = 865 Score = 29.6 bits (65), Expect = 4.0 Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 3/49 (6%) Frame = -1 Query: 445 PPPTAEERQH---GYSGEACSGGEGDGPHGLQGSGDPGESQVPG*PEPS 308 PPP A RQ+ +GEA G G PHG GS V G P+P+ Sbjct: 113 PPPEAPGRQNLSGAAAGEALVGAAGFPPHGDTGS-------VEGAPQPT 154
>XYLT2_CANFA (Q5QQ50) Xylosyltransferase 2 (EC 2.4.2.26) (Xylosyltransferase II)| (Peptide O-xylosyltransferase 2) Length = 865 Score = 29.6 bits (65), Expect = 4.0 Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 3/49 (6%) Frame = -1 Query: 445 PPPTAEERQH---GYSGEACSGGEGDGPHGLQGSGDPGESQVPG*PEPS 308 PPP A RQ+ +GEA G G PHG GS V G P+P+ Sbjct: 113 PPPEAPGRQNLSGAAAGEALVGAAGFPPHGDTGS-------VEGAPQPT 154
>YNU8_YEAST (P40159) Protein YNL208W| Length = 199 Score = 29.6 bits (65), Expect = 4.0 Identities = 13/31 (41%), Positives = 16/31 (51%) Frame = -1 Query: 415 GYSGEACSGGEGDGPHGLQGSGDPGESQVPG 323 G+ G GG+G G G QG G PG + G Sbjct: 125 GFGGPGGPGGQGFGRQGPQGFGGPGPQEFGG 155
>PALI_NEUCR (Q7SFN5) pH-response regulator protein palI/rim-9| Length = 705 Score = 29.6 bits (65), Expect = 4.0 Identities = 18/45 (40%), Positives = 18/45 (40%), Gaps = 4/45 (8%) Frame = -1 Query: 445 PPPTAEERQHGYSGEACSGGEGDGPHGLQGSGD----PGESQVPG 323 PPP GY G GG G P G QG D PG PG Sbjct: 369 PPP------RGYGGPGPRGGRGPPPQGYQGGPDRRPSPGAPYGPG 407
>FOXH1_HUMAN (O75593) Forkhead box protein H1 (Forkhead activin signal| transducer 1) (Fast-1) (hFAST-1) (Forkhead activin signal transducer 2) (Fast-2) Length = 365 Score = 29.6 bits (65), Expect = 4.0 Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 10/60 (16%) Frame = -1 Query: 457 RRLRPPPTAEERQHGYSGEACSGGEGDGP--HGL--------QGSGDPGESQVPG*PEPS 308 R RPP G+S ++ GG G+G GL G+G+ GE VP P PS Sbjct: 152 RPYRPPSPPPPPSEGFSIKSLLGGSGEGAPWPGLAPQSSPVPAGTGNSGEEAVPTPPLPS 211
>CO4A6_HUMAN (Q14031) Collagen alpha-6(IV) chain precursor| Length = 1691 Score = 29.6 bits (65), Expect = 4.0 Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 3/56 (5%) Frame = -1 Query: 439 PTAEERQHGYSGEACSGGE--GDGPHGLQG-SGDPGESQVPG*PEPSHHEERQGTR 281 P E G G+ G GP+G++G SG PG PG P S H ++GTR Sbjct: 796 PKGERGSPGTPGQVGQPGTPGSSGPYGIKGKSGLPG---APGFPGISGHPGKKGTR 848
>CO3A1_MOUSE (P08121) Collagen alpha-1(III) chain precursor| Length = 1464 Score = 29.6 bits (65), Expect = 4.0 Identities = 20/49 (40%), Positives = 21/49 (42%), Gaps = 4/49 (8%) Frame = -1 Query: 445 PPPTAEERQHGYSGEACSGGEGDGPHGLQG----SGDPGESQVPG*PEP 311 P PT G SG GP GLQG G PGE+ PG P P Sbjct: 619 PGPTGPAGDKGDSGPP-------GPQGLQGIPGTGGPPGENGKPGEPGP 660
>SFPQ_MOUSE (Q8VIJ6) Splicing factor, proline- and glutamine-rich| (Polypyrimidine tract-binding protein-associated splicing factor) (PTB-associated splicing factor) (PSF) (DNA-binding p52/p100 complex, 100 kDa subunit) Length = 699 Score = 29.6 bits (65), Expect = 4.0 Identities = 17/46 (36%), Positives = 21/46 (45%) Frame = -1 Query: 394 SGGEGDGPHGLQGSGDPGESQVPG*PEPSHHEERQGTRP*GRHPHP 257 +GG G GP G G P ++PG P+P G G HP P Sbjct: 183 AGGAGPGPKPGPGPGGPKGGKMPGGPKPG---GGPGMGAPGGHPKP 225
>CO8A1_MOUSE (Q00780) Collagen alpha-1(VIII) chain precursor| Length = 743 Score = 29.3 bits (64), Expect = 5.2 Identities = 12/20 (60%), Positives = 13/20 (65%) Frame = -1 Query: 376 GPHGLQGSGDPGESQVPG*P 317 GPHGL G G PG +PG P Sbjct: 200 GPHGLPGIGKPGGPGLPGQP 219
>CO8A2_HUMAN (P25067) Collagen alpha-2(VIII) chain precursor (Endothelial| collagen) Length = 703 Score = 29.3 bits (64), Expect = 5.2 Identities = 14/32 (43%), Positives = 18/32 (56%) Frame = -1 Query: 376 GPHGLQGSGDPGESQVPG*PEPSHHEERQGTR 281 GP G+ G G PG + +PG PS + GTR Sbjct: 273 GPPGVDGVGVPGAAGLPGPQGPSGAKGEPGTR 304
>CO2A1_HUMAN (P02458) Collagen alpha-1(II) chain precursor [Contains:| Chondrocalcin] Length = 1418 Score = 29.3 bits (64), Expect = 5.2 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 1/54 (1%) Frame = -1 Query: 445 PPPTAEERQHGYSGEACSGGEGDGPHGLQG-SGDPGESQVPG*PEPSHHEERQG 287 P P+ ++ G G++ G P GLQG +G PGE PG PS E G Sbjct: 851 PGPSGKDGPKGARGDSGPPGRAGEP-GLQGPAGPPGEKGEPGDDGPSGAEGPPG 903
>ARGE_LEPBI (P13440) Putative acetylornithine deacetylase (EC 3.5.1.16)| (Acetylornithinase) Length = 277 Score = 29.3 bits (64), Expect = 5.2 Identities = 19/62 (30%), Positives = 37/62 (59%), Gaps = 4/62 (6%) Frame = +1 Query: 133 RQKTEAVYRVRRQQHSILLPKTDRQ*RNFLAQPPGLPLRLKQGEDV----ALTDGSLDVP 300 + KT+ V +++ ++ ++P+T Q + +A P G +R++QG+ V L +G+ D P Sbjct: 21 KSKTK-VKSLKKNEYYTIIPETAEQEKVKVAIPIGKQIRVRQGDFVKRGDQLDEGNFD-P 78 Query: 301 HD 306 HD Sbjct: 79 HD 80
>BAT2_HUMAN (P48634) Large proline-rich protein BAT2 (HLA-B-associated transcript| 2) Length = 2157 Score = 29.3 bits (64), Expect = 5.2 Identities = 22/66 (33%), Positives = 25/66 (37%) Frame = -1 Query: 469 GSLRRRLRPPPTAEERQHGYSGEACSGGEGDGPHGLQGSGDPGESQVPG*PEPSHHEERQ 290 G R+ RP P + G S SGG G GP G G PG P P + Sbjct: 1391 GMERQNRRPGPGGKAGSSGSS----SGGGGGGPGGRTG---PGRGDKRSWPSPKNRSRPP 1443 Query: 289 GTRP*G 272 RP G Sbjct: 1444 EERPPG 1449
>RS5_GLOVI (Q7NEG9) 30S ribosomal protein S5| Length = 223 Score = 29.3 bits (64), Expect = 5.2 Identities = 15/36 (41%), Positives = 17/36 (47%) Frame = -1 Query: 388 GEGDGPHGLQGSGDPGESQVPG*PEPSHHEERQGTR 281 G G GP G G G PG Q P P+ ER+ R Sbjct: 10 GRGRGPGGPGGPGGPGPEQAPEDPDRESGGERRRGR 45
>CO8A1_RABIT (P14282) Collagen alpha-1(VIII) chain precursor (Endothelial| collagen) Length = 744 Score = 29.3 bits (64), Expect = 5.2 Identities = 12/20 (60%), Positives = 13/20 (65%) Frame = -1 Query: 376 GPHGLQGSGDPGESQVPG*P 317 GPHGL G G PG +PG P Sbjct: 200 GPHGLPGIGKPGGPGLPGQP 219 Score = 28.5 bits (62), Expect = 8.9 Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 1/47 (2%) Frame = -1 Query: 454 RLRPPPTAEERQHGYSGEACSGGEGD-GPHGLQGSGDPGESQVPG*P 317 R P P G G+ G +G GP G G G PG +PG P Sbjct: 123 RGEPGPRGPPGPPGLPGQGIPGIKGKPGPQGYPGVGKPGMPGMPGKP 169
>PHL2_LEPIN (P59116) Sphingomyelinase C 2 precursor (EC 3.1.4.12)| (Sphingomyelin phosphodiesterase 2) (SMase 2) Length = 623 Score = 29.3 bits (64), Expect = 5.2 Identities = 13/34 (38%), Positives = 22/34 (64%) Frame = +1 Query: 235 GLPLRLKQGEDVALTDGSLDVPHDETVLVIQELD 336 G+P R Q +D+ S ++P DETVL++ +L+ Sbjct: 310 GIPNRANQFDDIRNFIYSKNIPKDETVLIVGDLN 343
>SRCA_HUMAN (Q86TD4) Sarcalumenin precursor| Length = 932 Score = 29.3 bits (64), Expect = 5.2 Identities = 16/41 (39%), Positives = 20/41 (48%) Frame = -1 Query: 436 TAEERQHGYSGEACSGGEGDGPHGLQGSGDPGESQVPG*PE 314 TAE + G S S G+G GP + G PG + P PE Sbjct: 202 TAEPKAEGASPH--SEGDGVGPLNAEAEGSPGPGEEPAVPE 240
>PABP2_HUMAN (Q86U42) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PolyA binding protein II) (PABII) (Polyadenylate-binding nuclear protein 1) (Nuclear poly(A)-binding protein 1) Length = 305 Score = 28.9 bits (63), Expect = 6.8 Identities = 23/65 (35%), Positives = 28/65 (43%), Gaps = 3/65 (4%) Frame = -1 Query: 415 GYSGEACSGGEGDGPHGLQGSG-DPGESQVPG*PEPSHHEE--RQGTRP*GRHPHPA*V* 245 G +GE GG GD +GL+ +P E + PEP EE R P P P Sbjct: 32 GEAGEGAPGGAGDYGNGLESEELEPEELLLEPEPEPEPEEEPPRPRAPPGAPGPGPGSGA 91 Query: 244 AGGQE 230 G QE Sbjct: 92 PGSQE 96
>PABP2_BOVIN (Q28165) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PolyA-binding protein II) (PABII) (Polyadenylate-binding nuclear protein 1) (Nuclear poly(A)-binding protein 1) Length = 305 Score = 28.9 bits (63), Expect = 6.8 Identities = 23/65 (35%), Positives = 28/65 (43%), Gaps = 3/65 (4%) Frame = -1 Query: 415 GYSGEACSGGEGDGPHGLQGSG-DPGESQVPG*PEPSHHEE--RQGTRP*GRHPHPA*V* 245 G +GE GG GD +GL+ +P E + PEP EE R P P P Sbjct: 32 GEAGEGAPGGAGDYGNGLESEELEPEELLLEPEPEPEPEEEPPRPRAPPGAPGPGPGSGA 91 Query: 244 AGGQE 230 G QE Sbjct: 92 PGNQE 96
>PAK4_HUMAN (O96013) Serine/threonine-protein kinase PAK 4 (EC 2.7.11.1)| (p21-activated kinase 4) (PAK-4) Length = 591 Score = 28.9 bits (63), Expect = 6.8 Identities = 33/109 (30%), Positives = 46/109 (42%), Gaps = 22/109 (20%) Frame = -1 Query: 466 SLRRRLRPPPTAEERQHGYSGE-ACSGGEGDGPHGLQ-----------GSGD---PGESQ 332 SLRR PPP +++G E A + G G G + GSGD G + Sbjct: 99 SLRRDSPPPPARARQENGMPEEPATTARGGPGKAGSRGRFAGHSEAGGGSGDRRRAGPEK 158 Query: 331 VP-------G*PEPSHHEERQGTRP*GRHPHPA*V*AGGQEAALRSFFT 206 P G P+ S ++R + P P PA + +G + AA R F T Sbjct: 159 RPKSSREGSGGPQESSRDKRPLSGPDVGTPQPAGLASGAKLAAGRPFNT 207
>CNC_DROME (P20482) Segmentation protein cap'n'collar| Length = 1383 Score = 28.9 bits (63), Expect = 6.8 Identities = 15/40 (37%), Positives = 17/40 (42%), Gaps = 1/40 (2%) Frame = -1 Query: 418 HGYSGEACSGGEGD-GPHGLQGSGDPGESQVPG*PEPSHH 302 + Y +G G G HG GSG Q P P P HH Sbjct: 715 YSYQASPSNGAPGTPGQHGQYGSGANATLQPPPPPPPPHH 754
>GOGA4_HUMAN (Q13439) Golgin subfamily A member 4 (Trans-Golgi p230) (256 kDa| golgin) (Golgin-245) (Protein 72.1) Length = 2230 Score = 28.9 bits (63), Expect = 6.8 Identities = 12/33 (36%), Positives = 20/33 (60%) Frame = +2 Query: 11 QXRIXIVVNITHRCETMIKSHNIKCTLIQTTQE 109 Q R+ N+ RC+ I+SH +CTL+ + +E Sbjct: 285 QQRVKRQENLLKRCKETIQSHKEQCTLLTSEKE 317
>PRB3_HUMAN (Q04118) Basic salivary proline-rich protein 3 precursor (Parotid| salivary glycoprotein G1) (Proline-rich protein G1) Length = 309 Score = 28.9 bits (63), Expect = 6.8 Identities = 20/63 (31%), Positives = 26/63 (41%) Frame = -1 Query: 445 PPPTAEERQHGYSGEACSGGEGDGPHGLQGSGDPGESQVPG*PEPSHHEERQGTRP*GRH 266 PPP + G G+ +GP G+ G PG PE S + G +P G Sbjct: 186 PPPQGGNQSQGPPPRP---GKPEGPPPQGGNQSQGPPPRPGKPEGS--PSQGGNKPRGPP 240 Query: 265 PHP 257 PHP Sbjct: 241 PHP 243
>GLT5_WHEAT (P10388) Glutenin, high molecular weight subunit DX5 precursor| Length = 839 Score = 28.9 bits (63), Expect = 6.8 Identities = 16/54 (29%), Positives = 24/54 (44%) Frame = -1 Query: 439 PTAEERQHGYSGEACSGGEGDGPHGLQGSGDPGESQVPG*PEPSHHEERQGTRP 278 PT+ + Q G + G +G P Q PG+ Q PG + +QG +P Sbjct: 206 PTSSQLQPGQLQQPAQGQQGQQPGQAQQGQQPGQGQQPG-------QGQQGQQP 252
>SQT1_CAEEL (P12114) Cuticle collagen sqt-1 (Protein squat-1) (Protein| roller-5) Length = 324 Score = 28.9 bits (63), Expect = 6.8 Identities = 20/58 (34%), Positives = 23/58 (39%), Gaps = 5/58 (8%) Frame = -1 Query: 445 PPPTAEERQHGYSGEACSGGEGD----GPHGLQG-SGDPGESQVPG*PEPSHHEERQG 287 P + +H G G GD GP G G G PGE G PS + RQG Sbjct: 225 PGEKGRDAEHPIGGPGPKGPRGDQGPTGPAGQNGLHGPPGEPGTVGPEGPSGKQGRQG 282
>S4A4_AMBTI (O13134) Electrogenic sodium bicarbonate cotransporter 1 (Sodium| bicarbonate cotransporter) (Na(+)/HCO3(-) cotransporter) (Solute carrier family 4 member 4) Length = 1035 Score = 28.9 bits (63), Expect = 6.8 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 3/44 (6%) Frame = -1 Query: 454 RLRPP---PTAEERQHGYSGEACSGGEGDGPHGLQGSGDPGESQ 332 R+ PP P++++R++ YSG GD PH G G G+S+ Sbjct: 347 RIEPPKSLPSSDKRKNMYSGGDNLQMNGDAPHD-DGGGGHGDSE 389
>CD99_MOUSE (Q8VCN6) CD99 antigen precursor (Paired immunoglobin-like type 2| receptor-ligand) (PILR-L) Length = 175 Score = 28.9 bits (63), Expect = 6.8 Identities = 21/53 (39%), Positives = 25/53 (47%), Gaps = 7/53 (13%) Frame = -1 Query: 448 RPPPTAEE-RQHGYSGE------ACSGGEGDGPHGLQGSGDPGESQVPG*PEP 311 RP P + R HG SG A + G+G G G +GSGD G G EP Sbjct: 79 RPQPDPKPPRPHGDSGGISDSDLADAAGQGGGGAGRRGSGDEGGHGGAGGAEP 131
>CO9A2_CHICK (P12108) Collagen alpha-2(IX) chain precursor| Length = 677 Score = 28.5 bits (62), Expect = 8.9 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 5/51 (9%) Frame = -1 Query: 445 PPPTAEERQHGYSGEACSGGEGD-GPHGLQGS----GDPGESQVPG*PEPS 308 P P G G A +G +G+ GP G+ G G PG + +PG EP+ Sbjct: 615 PGPPGIPGLPGIPGHALAGKDGERGPPGVPGDAGRPGSPGPAGLPGFCEPA 665
>XYLT1_PANTR (Q5QQ57) Xylosyltransferase 1 (EC 2.4.2.26) (Xylosyltransferase I)| (Peptide O-xylosyltransferase 1) Length = 945 Score = 28.5 bits (62), Expect = 8.9 Identities = 17/40 (42%), Positives = 17/40 (42%) Frame = -1 Query: 457 RRLRPPPTAEERQHGYSGEACSGGEGDGPHGLQGSGDPGE 338 RR P A R G G C GG G GP G PGE Sbjct: 65 RRDLPAEPAAARGGGGGGGGCGGG-GRGPQARARGGGPGE 103
>CO6A2_MOUSE (Q02788) Collagen alpha-2(VI) chain precursor| Length = 1029 Score = 28.5 bits (62), Expect = 8.9 Identities = 20/44 (45%), Positives = 22/44 (50%), Gaps = 1/44 (2%) Frame = -1 Query: 415 GYSGEACSGGEGDGPHGLQG-SGDPGESQVPG*PEPSHHEERQG 287 GY GEA S GE G G +G SG PG PG P + QG Sbjct: 365 GYPGEAGSPGE-RGDQGAKGDSGRPGRRGPPGDPGDKGSKGYQG 407
>TTBK1_HUMAN (Q5TCY1) Tau-tubulin kinase 1 (EC 2.7.11.1) (Brain-derived tau| kinase) Length = 1321 Score = 28.5 bits (62), Expect = 8.9 Identities = 25/76 (32%), Positives = 26/76 (34%), Gaps = 5/76 (6%) Frame = -1 Query: 469 GSLRRRLRPPPTAEERQHGYSGEACSGGEGDGPHGL-----QGSGDPGESQVPG*PEPSH 305 G RRRL PT R A + P L QG G SQ P PSH Sbjct: 581 GEERRRLGAEPTVRPRGRSMQALAEEDLQHLPPQPLPPQLSQGDGRSETSQPPTPGSPSH 640 Query: 304 HEERQGTRP*GRHPHP 257 G RP R P Sbjct: 641 SPLHSGPRPRRRESDP 656
>CO4A3_BOVIN (Q28084) Collagen alpha-3(IV) chain (Fragment)| Length = 471 Score = 28.5 bits (62), Expect = 8.9 Identities = 16/55 (29%), Positives = 21/55 (38%) Frame = -1 Query: 445 PPPTAEERQHGYSGEACSGGEGDGPHGLQGSGDPGESQVPG*PEPSHHEERQGTR 281 P P + G GE G P G PGE PG P P+ + +G + Sbjct: 160 PGPPGSAGEPGMQGEPGPPGPPGDPGPCGPKGKPGEDGPPGTPGPTGEKGNKGCK 214
>PALI_MAGGR (Q51MB1) pH-response regulator protein palI/RIM9| Length = 736 Score = 28.5 bits (62), Expect = 8.9 Identities = 17/49 (34%), Positives = 20/49 (40%) Frame = -1 Query: 469 GSLRRRLRPPPTAEERQHGYSGEACSGGEGDGPHGLQGSGDPGESQVPG 323 G R PPP + + G EA G GP+G Q PG PG Sbjct: 372 GPPMRGRAPPPGYQYDRRGSPAEAYGPPPGQGPYG-QRQQSPGPPSAPG 419
>COAA1_MOUSE (Q05306) Collagen alpha-1(X) chain precursor| Length = 680 Score = 28.5 bits (62), Expect = 8.9 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 1/47 (2%) Frame = -1 Query: 454 RLRPPPTAEERQHGYSGEACSGGEG-DGPHGLQGSGDPGESQVPG*P 317 R P P+ + GY G G GP G+ +G PG PG P Sbjct: 71 RGHPGPSGPPGKPGYGSPGLQGEPGLPGPPGISATGKPGLPGPPGKP 117
>Y674_VIBPA (Q87RV2) UPF0255 protein VP0674| Length = 415 Score = 28.5 bits (62), Expect = 8.9 Identities = 16/56 (28%), Positives = 30/56 (53%) Frame = +1 Query: 40 YPQVRNNDQVSQHQVHFNSDNTRKLIKSP*PRQKTEAVYRVRRQQHSILLPKTDRQ 207 YP ++N++ Q QV N + K+ ++ E Y+ R+ ++ LP+TD+Q Sbjct: 137 YPHLKNDNLALQAQVLANKAYSEGAEKTQYTIKQIEVPYQKRKIIANLHLPRTDKQ 192
>CO6A1_MOUSE (Q04857) Collagen alpha-1(VI) chain precursor| Length = 1025 Score = 28.5 bits (62), Expect = 8.9 Identities = 19/54 (35%), Positives = 22/54 (40%), Gaps = 1/54 (1%) Frame = -1 Query: 445 PPPTAEERQHGYSGEACSGGEGDGPHGLQG-SGDPGESQVPG*PEPSHHEERQG 287 P P + G GE G DG G G SG PG+ PG P P + G Sbjct: 357 PGPKGDAGAFGMKGEKGEAG-ADGEAGRPGNSGSPGDEGDPGEPGPPGEKGEAG 409
>CO2A1_RAT (P05539) Collagen alpha-1(II) chain precursor [Contains:| Chondrocalcin] Length = 1419 Score = 28.5 bits (62), Expect = 8.9 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 1/47 (2%) Frame = -1 Query: 445 PPPTAEERQHGYSGEACSGGEGDGPHGLQG-SGDPGESQVPG*PEPS 308 P P ++ G G+ + G P GLQG +G PGE PG PS Sbjct: 852 PGPAGKDGPKGARGDTGAPGRAGDP-GLQGPAGAPGEKGEPGDDGPS 897 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 63,017,932 Number of Sequences: 219361 Number of extensions: 1272263 Number of successful extensions: 5076 Number of sequences better than 10.0: 112 Number of HSP's better than 10.0 without gapping: 4110 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5004 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3014947676 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
