ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd11n14 |
|---|---|
| Clone Library Name | barley_pub |
>TEP1_HUMAN (Q99973) Telomerase protein component 1 (Telomerase-associated| protein 1) (Telomerase protein 1) (p240) (p80 telomerase homolog) Length = 2627 Score = 36.2 bits (82), Expect = 0.045 Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 11/94 (11%) Frame = +1 Query: 40 CHLVVSNPSIQILMHVRIMQNHALATKQQLLAPQHRVW-----------QELDSAGYLTK 186 CHL Q+ M +RI + +++L + R W Q L++A L+ Sbjct: 612 CHLSRQ----QLRMAMRIPVLYEQLKREKLRVHKARQWKYDGEMLNRYRQALETAVNLSV 667 Query: 187 KCSLPIIPSRTPTLLPLDLLFEAMCPPSRHPEGP 288 K SLP++P RT + D + +CP S +P+GP Sbjct: 668 KHSLPLLPGRTVLVYLTDANADRLCPKS-NPQGP 700
>PI4K_DICDI (P54677) Phosphatidylinositol 4-kinase (EC 2.7.1.67) (PI4-kinase)| (PtdIns-4-kinase) (PI4K-alpha) Length = 1093 Score = 32.3 bits (72), Expect = 0.65 Identities = 19/61 (31%), Positives = 31/61 (50%) Frame = +1 Query: 193 SLPIIPSRTPTLLPLDLLFEAMCPPSRHPEGPQPSRR*CRVNTATSTACPASECSSCTRS 372 SLP+ P+++ L L A+ PPS+ + P PS NT T+T + ++ T + Sbjct: 725 SLPVTPTQSTVLNNLISTSTAISPPSQQQQLPSPS------NTTTTTTTTTTNTNNTTTT 778 Query: 373 T 375 T Sbjct: 779 T 779
>MATK_TRISM (Q8MCM3) Maturase K (Intron maturase)| Length = 509 Score = 31.2 bits (69), Expect = 1.4 Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 10/90 (11%) Frame = -3 Query: 469 VISSLNDLLACDA-AVPASKPLSWPTPRELDDL---------YCVYMKSIPKQDKLSRLQ 320 +I SL C+ P SKP+ W + D + C Y K+ L R++ Sbjct: 370 IIRSLAKAKFCNVLGHPISKPV-WADSSDFDIIERFLRICSNLCHYYHGSSKKKSLYRIK 428 Query: 319 YLLDISAEKAEDLRDAATAGTLPQTAGQEE 230 Y+L +S K + +T QT+G EE Sbjct: 429 YILRLSCIKTLACKHKSTVRAFLQTSGSEE 458
>GAG_SMRVH (P21411) Gag polyprotein [Contains: Core protein p19; Core protein| p16; Probable core protein p35; Probable core protein p10] Length = 739 Score = 30.8 bits (68), Expect = 1.9 Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 8/73 (10%) Frame = +1 Query: 262 PPSRHPEGPQPSRR*CRVNTATSTACP--------ASECSSCTRSTGRQALAEWAMTRAS 417 PP++ P P + N +T CP ASEC S G+ + + + R Sbjct: 623 PPTQLPTQPNAPQASLIKNLGPTTKCPRCKKGFHWASECRSRLDINGQPIIKQGNLNRGQ 682 Query: 418 KQAPPRHMRAGRS 456 Q P M +G S Sbjct: 683 PQGPTTGMNSGAS 695
>NPHP4_MOUSE (P59240) Nephrocystin-4 (Nephroretinin)| Length = 1425 Score = 30.8 bits (68), Expect = 1.9 Identities = 16/41 (39%), Positives = 23/41 (56%) Frame = -3 Query: 349 PKQDKLSRLQYLLDISAEKAEDLRDAATAGTLPQTAGQEEE 227 PK+ ++ + Q L D+ +E A L AG PQ AGQE + Sbjct: 868 PKRKRVVQAQRLADVDSELAAMLLTHTRAGQGPQAAGQEAD 908
>UNG_PRVKA (P52507) Uracil-DNA glycosylase (EC 3.2.2.-) (UDG)| Length = 316 Score = 30.0 bits (66), Expect = 3.2 Identities = 18/58 (31%), Positives = 24/58 (41%) Frame = +1 Query: 280 EGPQPSRR*CRVNTATSTACPASECSSCTRSTGRQALAEWAMTRASKQAPPRHMRAGR 453 EGP PS+R C + PA+ +S + + A A A A P R A R Sbjct: 2 EGPPPSKRPCGLPPGVRLVVPAAAAASASNAATAAAAAAPAGAGAGASKPARPSAAAR 59
>KR106_HUMAN (P60371) Keratin-associated protein 10-6 (Keratin-associated| protein 10.6) (High sulfur keratin-associated protein 10.6) (Keratin-associated protein 18-6) (Keratin-associated protein 18.6) Length = 365 Score = 30.0 bits (66), Expect = 3.2 Identities = 13/34 (38%), Positives = 16/34 (47%) Frame = -2 Query: 170 AESSSCQTRCCGANSCCFVARAWFCMILTCISIC 69 A +SSCQ CC SC + C C S+C Sbjct: 325 ASASSCQPSCCRTASCVSLLCRPMCSRPACYSLC 358 Score = 28.9 bits (63), Expect = 7.2 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 6/39 (15%) Frame = -2 Query: 167 ESSSCQTRCCGANSC---CFV---ARAWFCMILTCISIC 69 + SSCQ CC ++ C C V + C + C+S+C Sbjct: 91 QQSSCQLACCASSPCQQACCVPVCCKTVCCKPVCCVSVC 129
>MARK4_MOUSE (Q8CIP4) MAP/microtubule affinity-regulating kinase 4 (EC 2.7.11.1)| Length = 752 Score = 29.6 bits (65), Expect = 4.2 Identities = 14/33 (42%), Positives = 19/33 (57%) Frame = +3 Query: 378 SSSSRGVGHDKGFEAGTAASHASRSFSDEITPS 476 +SSS+G H+KG A ++ H R SD PS Sbjct: 397 TSSSKGSSHNKGQRASSSTYHRQRRHSDFCGPS 429
>KR10A_HUMAN (P60014) Keratin-associated protein 10-10 (Keratin-associated| protein 10.10) (High sulfur keratin-associated protein 10.10) (Keratin-associated protein 18-10) (Keratin-associated protein 18.10) Length = 251 Score = 29.6 bits (65), Expect = 4.2 Identities = 13/34 (38%), Positives = 16/34 (47%) Frame = -2 Query: 170 AESSSCQTRCCGANSCCFVARAWFCMILTCISIC 69 A +SSCQ CC SC + C C S+C Sbjct: 211 ASASSCQPSCCRTASCVSLLCRPVCSRPACYSLC 244
>ICP4_EHV1V (Q6S6U0) Trans-acting transcriptional protein ICP4 (155 kDa| immediate-early protein) Length = 1487 Score = 29.6 bits (65), Expect = 4.2 Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 7/108 (6%) Frame = +1 Query: 127 LLAPQHRVWQELDSA-------GYLTKKCSLPIIPSRTPTLLPLDLLFEAMCPPSRHPEG 285 LLAP R Q S+ G + SL +P PT+ ++ PS H + Sbjct: 800 LLAPPTRSQQPSSSSPGGEPFSGSAAAEGSLQTLPPLWPTVPGK----QSATVPSSHSQS 855 Query: 286 PQPSRR*CRVNTATSTACPASECSSCTRSTGRQALAEWAMTRASKQAP 429 PQ S+ T+T C A++ ++ RS G+Q + A + + +P Sbjct: 856 PQHSQSGGGAGATTATCCRATQTNA--RSRGQQHQPQKARSPQAAASP 901
>ICP4_EHV1K (P17473) Trans-acting transcriptional protein ICP4 (155 kDa| immediate-early protein) Length = 1487 Score = 29.6 bits (65), Expect = 4.2 Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 7/108 (6%) Frame = +1 Query: 127 LLAPQHRVWQELDSA-------GYLTKKCSLPIIPSRTPTLLPLDLLFEAMCPPSRHPEG 285 LLAP R Q S+ G + SL +P PT+ ++ PS H + Sbjct: 800 LLAPPTRSQQPSSSSPGGEPFSGSAAAEGSLQTLPPLWPTVPGK----QSATVPSSHSQS 855 Query: 286 PQPSRR*CRVNTATSTACPASECSSCTRSTGRQALAEWAMTRASKQAP 429 PQ S+ T+T C A++ ++ RS G+Q + A + + +P Sbjct: 856 PQHSQSGGGAGATTATCCRATQTNA--RSRGQQHQPQKARSPQAAASP 901
>ICP4_EHV1B (P28925) Trans-acting transcriptional protein ICP4 (155 kDa| immediate-early protein) Length = 1487 Score = 29.6 bits (65), Expect = 4.2 Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 7/108 (6%) Frame = +1 Query: 127 LLAPQHRVWQELDSA-------GYLTKKCSLPIIPSRTPTLLPLDLLFEAMCPPSRHPEG 285 LLAP R Q S+ G + SL +P PT+ ++ PS H + Sbjct: 800 LLAPPTRSQQPSSSSPGGEPFSGSAAAEGSLQTLPPLWPTVPGK----QSATVPSSHSQS 855 Query: 286 PQPSRR*CRVNTATSTACPASECSSCTRSTGRQALAEWAMTRASKQAP 429 PQ S+ T+T C A++ ++ RS G+Q + A + + +P Sbjct: 856 PQHSQSGGGAGATTATCCRATQTNA--RSRGQQHQPQKARSPQAAASP 901
>SULH_SCHPO (O74377) Probable sulfate permease C3H7.02| Length = 877 Score = 29.3 bits (64), Expect = 5.5 Identities = 18/46 (39%), Positives = 22/46 (47%) Frame = +3 Query: 39 LSPCGVKSVYTNTYACQDHAKPCPSYKTAAIGATAPRLAGARLCWL 176 + P V S+ T+ AK P+Y A IG T LAGA C L Sbjct: 188 IGPVAVMSLVTSKVIANVQAKD-PNYDAAQIGTTLALLAGAITCGL 232
>KR10B_HUMAN (P60412) Keratin-associated protein 10-11 (Keratin-associated| protein 10.11) (High sulfur keratin-associated protein 10.11) (Keratin-associated protein 18-11) (Keratin-associated protein 18.11) Length = 298 Score = 28.9 bits (63), Expect = 7.2 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 6/39 (15%) Frame = -2 Query: 167 ESSSCQTRCCGANS----CC--FVARAWFCMILTCISIC 69 + SSCQ CC ++S CC + +C + C+ +C Sbjct: 170 QQSSCQPACCTSSSYQQACCVPVCCKTVYCKPICCVPVC 208 Score = 28.5 bits (62), Expect = 9.4 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 3/34 (8%) Frame = -2 Query: 161 SSCQTRCCGANSC---CFVARAWFCMILTCISIC 69 SSCQ CC ++SC C V C + C+S C Sbjct: 130 SSCQPACCASSSCQPACCVPVC--CKPVCCVSTC 161
>VNUC_EBOG4 (Q9QCE9) Nucleoprotein (Nucleocapsid protein)| Length = 739 Score = 28.9 bits (63), Expect = 7.2 Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 9/80 (11%) Frame = -3 Query: 436 DAAVPASKPLS-WPTPRELDDLYC------VYMKSIPKQDKLSRLQY--LLDISAEKAED 284 +AA A K L + RELD L + M K++++S Q ++ + E+ Sbjct: 345 EAATEAEKQLQQYAESRELDHLGLDDQEKKILMNFHQKKNEISFQQTNAMVTLKKERLAK 404 Query: 283 LRDAATAGTLPQTAGQEEEE 224 L +A TA +LP+T+G +++ Sbjct: 405 LTEAITAASLPKTSGHYDDD 424
>ODD_DROME (P23803) Protein odd-skipped| Length = 392 Score = 28.9 bits (63), Expect = 7.2 Identities = 11/40 (27%), Positives = 22/40 (55%) Frame = +1 Query: 43 HLVVSNPSIQILMHVRIMQNHALATKQQLLAPQHRVWQEL 162 H +S ++ +H+R M ++ +QQ QHR+W ++ Sbjct: 61 HPAISEEAVATQLHMRHMAHYQQQQQQQQQQQQHRLWLQM 100
>UNG_PRVIF (P52506) Uracil-DNA glycosylase (EC 3.2.2.-) (UDG)| Length = 315 Score = 28.9 bits (63), Expect = 7.2 Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 1/52 (1%) Frame = +1 Query: 280 EGPQPSRR*CRVNTATSTACPASECSSCTRSTGRQALA-EWAMTRASKQAPP 432 EGP PS+R C + PA+ S+ +T A A A ASK A P Sbjct: 2 EGPPPSKRPCGLPPGVRLVVPAAAASASNAATAAAAAAPAGAGAGASKPARP 53
>INSI1_RAT (Q08755) Insulin-induced gene 1 protein (INSIG-1) (Insulin-induced| growth response protein CL-6) (Immediate-early protein CL-6) Length = 259 Score = 28.9 bits (63), Expect = 7.2 Identities = 17/52 (32%), Positives = 24/52 (46%) Frame = +1 Query: 193 SLPIIPSRTPTLLPLDLLFEAMCPPSRHPEGPQPSRR*CRVNTATSTACPAS 348 S P + P LP ++ A+CP P+P+ R R TA +A P S Sbjct: 10 SYPSAGAARPYSLPRGMIAAALCPQGPGAPEPEPAPRGQREGTAGFSARPGS 61
>TEP1_RAT (O08653) Telomerase protein component 1 (rTLP1)| (Telomerase-associated protein 1) (Telomerase protein 1) (p240) (p230) (p80 telomerase homolog) Length = 2629 Score = 28.9 bits (63), Expect = 7.2 Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 9/83 (10%) Frame = +1 Query: 67 IQILMHVRIMQNHALATKQQL---------LAPQHRVWQELDSAGYLTKKCSLPIIPSRT 219 ++ M + +M H K +L L R Q L++A ++ K +LP +P RT Sbjct: 632 LRAAMAIPVMYEHLKREKLRLHKARQWTCDLELLERYRQALETAVNISVKHNLPPLPGRT 691 Query: 220 PTLLPLDLLFEAMCPPSRHPEGP 288 + D +CP S H +GP Sbjct: 692 LLVYLTDANANRLCPKS-HLQGP 713
>C43BP_MOUSE (Q9EQG9) Goodpasture antigen-binding protein (EC 2.7.11.9) (GPBP)| (Collagen type IV alpha-3-binding protein) (StAR-related lipid transfer protein 11) (StARD11) (START domain-containing protein 11) Length = 624 Score = 28.9 bits (63), Expect = 7.2 Identities = 11/27 (40%), Positives = 18/27 (66%) Frame = -1 Query: 285 TFGMPRRRAHCLKQQVKRKKSWRSRGD 205 T G+ +HC++ VKR++SW+ R D Sbjct: 252 TAGILATLSHCIELMVKREESWQKRHD 278
>MARK4_HUMAN (Q96L34) MAP/microtubule affinity-regulating kinase 4 (EC 2.7.11.1)| (MAP/microtubule affinity-regulating kinase-like 1) Length = 752 Score = 28.9 bits (63), Expect = 7.2 Identities = 13/33 (39%), Positives = 18/33 (54%) Frame = +3 Query: 378 SSSSRGVGHDKGFEAGTAASHASRSFSDEITPS 476 +SSS+G H KG + ++ H R SD PS Sbjct: 397 TSSSKGTSHSKGQRSSSSTYHRQRRHSDFCGPS 429
>VNUC_EBOZM (P18272) Nucleoprotein (Nucleocapsid protein)| Length = 739 Score = 28.5 bits (62), Expect = 9.4 Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 9/80 (11%) Frame = -3 Query: 436 DAAVPASKPLS-WPTPRELDDLYC------VYMKSIPKQDKLSRLQY--LLDISAEKAED 284 +AA A K L + RELD L + M K++++S Q ++ + E+ Sbjct: 345 EAATEAEKQLQQYAESRELDHLGLDDQEKKILMNFHQKKNEISFQQTNAMVTLRKERLAK 404 Query: 283 LRDAATAGTLPQTAGQEEEE 224 L +A TA +LP+T+G +++ Sbjct: 405 LTEAITAASLPKTSGHYDDD 424
>VNUC_EBOZ5 (O72142) Nucleoprotein (Nucleocapsid protein)| Length = 739 Score = 28.5 bits (62), Expect = 9.4 Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 9/80 (11%) Frame = -3 Query: 436 DAAVPASKPLS-WPTPRELDDLYC------VYMKSIPKQDKLSRLQY--LLDISAEKAED 284 +AA A K L + RELD L + M K++++S Q ++ + E+ Sbjct: 345 EAATEAEKQLQQYAESRELDHLGLDDQEKKILMNFHQKKNEISFQQTNAMVTLRKERLAK 404 Query: 283 LRDAATAGTLPQTAGQEEEE 224 L +A TA +LP+T+G +++ Sbjct: 405 LTEAITAASLPKTSGHYDDD 424
>MDC1_PIG (Q767L8) Mediator of DNA damage checkpoint protein 1| Length = 2042 Score = 28.5 bits (62), Expect = 9.4 Identities = 25/91 (27%), Positives = 35/91 (38%), Gaps = 11/91 (12%) Frame = +1 Query: 211 SRTPTLLPLDLLFEA--MCP-------PSRHPEGPQP--SRR*CRVNTATSTACPASECS 357 S + P+D EA +CP P +HPE P+P S+ R +T P Sbjct: 753 SEASEIQPVDTHLEARGLCPSPPRAALPEQHPESPEPLGSQGGGRQTVEKATGTPRETAE 812 Query: 358 SCTRSTGRQALAEWAMTRASKQAPPRHMRAG 450 T G + RA+K+ P R G Sbjct: 813 GPTPERG-------PLERATKEPPSEGERGG 836
>KR108_HUMAN (P60410) Keratin-associated protein 10-8 (Keratin-associated| protein 10.8) (High sulfur keratin-associated protein 10.8) (Keratin-associated protein 18-8) (Keratin-associated protein 18.8) Length = 259 Score = 28.5 bits (62), Expect = 9.4 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 6/39 (15%) Frame = -2 Query: 167 ESSSCQTRCCGANSC---CFV---ARAWFCMILTCISIC 69 + SSCQ CC ++ C C V ++ C + C+SIC Sbjct: 100 QQSSCQPACCTSSPCQQACCVPVCCKSNCCKPVCCVSIC 138 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 67,908,083 Number of Sequences: 219361 Number of extensions: 1363171 Number of successful extensions: 4918 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 4513 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4892 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3188886965 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
