ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd11n14 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_197133.1| Oryza sativa (japonica cultivar-group) putative chloroplast inner envelope protein (OSJNBa0051D19.7), mRNA Length = 2967 Score = 115 bits (58), Expect = 1e-22 Identities = 139/166 (83%) Strand = Plus / Minus Query: 291 gccttctcggcgctgatgtcgagtaaatactgcaacctcgacagcttgtcctgcttcgga 350 ||||||||| |||| ||| | || | |||||||||||| |||||||| || |||||||| Sbjct: 2891 gccttctcgtcgcttatgccaagcagatactgcaaccttgacagcttttcaggcttcgga 2832 Query: 351 atgctcttcatgtacacgcagtacaggtcgtcaagctctcgcggagtgggccatgacaag 410 |||||||||||||| | || |||||| || || ||||||| | || |||||||| | | Sbjct: 2831 atgctcttcatgtaaatgccgtacagatcatccagctctcctgatgtaggccatgatagg 2772 Query: 411 ggcttcgaagcaggcaccgccgcgtcacatgcgagcaggtcgttca 456 ||||||||||||||||| |||||||| ||||| |||| |||||||| Sbjct: 2771 ggcttcgaagcaggcacagccgcgtcgcatgcaagcaagtcgttca 2726
>gb|AC023240.9| Oryza sativa chromosome 10 BAC OSJNBa0051D19 genomic sequence, complete sequence Length = 131984 Score = 115 bits (58), Expect = 1e-22 Identities = 139/166 (83%) Strand = Plus / Minus Query: 291 gccttctcggcgctgatgtcgagtaaatactgcaacctcgacagcttgtcctgcttcgga 350 ||||||||| |||| ||| | || | |||||||||||| |||||||| || |||||||| Sbjct: 58255 gccttctcgtcgcttatgccaagcagatactgcaaccttgacagcttttcaggcttcgga 58196 Query: 351 atgctcttcatgtacacgcagtacaggtcgtcaagctctcgcggagtgggccatgacaag 410 |||||||||||||| | || |||||| || || ||||||| | || |||||||| | | Sbjct: 58195 atgctcttcatgtaaatgccgtacagatcatccagctctcctgatgtaggccatgatagg 58136 Query: 411 ggcttcgaagcaggcaccgccgcgtcacatgcgagcaggtcgttca 456 ||||||||||||||||| |||||||| ||||| |||| |||||||| Sbjct: 58135 ggcttcgaagcaggcacagccgcgtcgcatgcaagcaagtcgttca 58090 Score = 61.9 bits (31), Expect = 2e-06 Identities = 52/59 (88%) Strand = Plus / Minus Query: 130 ttggcgccacagcaccgcgtctggcaggagctcgactctgctggctacctaacaaaaaa 188 |||||||||||||||| || ||| ||| ||| ||||||||||||||||||||||||| Sbjct: 58410 ttggcgccacagcaccaagtatggtaggtcctcaactctgctggctacctaacaaaaaa 58352
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 115 bits (58), Expect = 1e-22 Identities = 139/166 (83%) Strand = Plus / Plus Query: 291 gccttctcggcgctgatgtcgagtaaatactgcaacctcgacagcttgtcctgcttcgga 350 ||||||||| |||| ||| | || | |||||||||||| |||||||| || |||||||| Sbjct: 18154873 gccttctcgtcgcttatgccaagcagatactgcaaccttgacagcttttcaggcttcgga 18154932 Query: 351 atgctcttcatgtacacgcagtacaggtcgtcaagctctcgcggagtgggccatgacaag 410 |||||||||||||| | || |||||| || || ||||||| | || |||||||| | | Sbjct: 18154933 atgctcttcatgtaaatgccgtacagatcatccagctctcctgatgtaggccatgatagg 18154992 Query: 411 ggcttcgaagcaggcaccgccgcgtcacatgcgagcaggtcgttca 456 ||||||||||||||||| |||||||| ||||| |||| |||||||| Sbjct: 18154993 ggcttcgaagcaggcacagccgcgtcgcatgcaagcaagtcgttca 18155038 Score = 61.9 bits (31), Expect = 2e-06 Identities = 52/59 (88%) Strand = Plus / Plus Query: 130 ttggcgccacagcaccgcgtctggcaggagctcgactctgctggctacctaacaaaaaa 188 |||||||||||||||| || ||| ||| ||| ||||||||||||||||||||||||| Sbjct: 18154718 ttggcgccacagcaccaagtatggtaggtcctcaactctgctggctacctaacaaaaaa 18154776
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 115 bits (58), Expect = 1e-22 Identities = 139/166 (83%) Strand = Plus / Plus Query: 291 gccttctcggcgctgatgtcgagtaaatactgcaacctcgacagcttgtcctgcttcgga 350 ||||||||| |||| ||| | || | |||||||||||| |||||||| || |||||||| Sbjct: 18164126 gccttctcgtcgcttatgccaagcagatactgcaaccttgacagcttttcaggcttcgga 18164185 Query: 351 atgctcttcatgtacacgcagtacaggtcgtcaagctctcgcggagtgggccatgacaag 410 |||||||||||||| | || |||||| || || ||||||| | || |||||||| | | Sbjct: 18164186 atgctcttcatgtaaatgccgtacagatcatccagctctcctgatgtaggccatgatagg 18164245 Query: 411 ggcttcgaagcaggcaccgccgcgtcacatgcgagcaggtcgttca 456 ||||||||||||||||| |||||||| ||||| |||| |||||||| Sbjct: 18164246 ggcttcgaagcaggcacagccgcgtcgcatgcaagcaagtcgttca 18164291 Score = 61.9 bits (31), Expect = 2e-06 Identities = 52/59 (88%) Strand = Plus / Plus Query: 130 ttggcgccacagcaccgcgtctggcaggagctcgactctgctggctacctaacaaaaaa 188 |||||||||||||||| || ||| ||| ||| ||||||||||||||||||||||||| Sbjct: 18163971 ttggcgccacagcaccaagtatggtaggtcctcaactctgctggctacctaacaaaaaa 18164029
>gb|AY110159.1| Zea mays CL31053_1 mRNA sequence Length = 1344 Score = 48.1 bits (24), Expect = 0.026 Identities = 57/68 (83%) Strand = Plus / Plus Query: 396 gtgggccatgacaagggcttcgaagcaggcaccgccgcgtcacatgcgagcaggtcgttc 455 ||||||||||||||||| || ||||| ||||| || ||||||||||||| ||| ||| Sbjct: 509 gtgggccatgacaagggtcgtgatgcagggaccgcagcatcacatgcgagcatgtcattc 568 Query: 456 agtgatga 463 || ||||| Sbjct: 569 agagatga 576
>ref|XM_535982.2| PREDICTED: Canis familiaris cardiac titin (TTN), mRNA Length = 36258 Score = 42.1 bits (21), Expect = 1.6 Identities = 33/37 (89%) Strand = Plus / Plus Query: 18 ttgaaagaatgcagcagaaaactgtcaccttgtggtg 54 |||||| |||| || |||||||||||||||| ||||| Sbjct: 28913 ttgaaacaatggagaagaaaactgtcaccttctggtg 28949
>gb|AF508982.1| Homo sapiens Na+/Ca2+ exchanger isoform 3 (SLC8A3) gene, promoter region and complete cds Length = 145118 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 24 gaatgcagcagaaaactgtca 44 ||||||||||||||||||||| Sbjct: 129073 gaatgcagcagaaaactgtca 129053
>emb|CR956416.5| Pig DNA sequence from clone PigI-464E6 on chromosome 7, complete sequence Length = 141597 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 183 aaaaaagtgttctcttcccat 203 ||||||||||||||||||||| Sbjct: 26869 aaaaaagtgttctcttcccat 26849
>gb|AC150843.16| Medicago truncatula clone mth2-103p8, complete sequence Length = 125707 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 83 atgtcaggatcatgcaaaaccatgc 107 ||||||||||||| ||||||||||| Sbjct: 48840 atgtcaggatcattcaaaaccatgc 48816
>emb|BX324156.6| Zebrafish DNA sequence from clone CH211-215C3 in linkage group 1, complete sequence Length = 214471 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 19 tgaaagaatgcagcagaaaac 39 ||||||||||||||||||||| Sbjct: 196841 tgaaagaatgcagcagaaaac 196861
>emb|AL135747.4|CNS01DVE Human chromosome 14 DNA sequence BAC R-1023I22 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 173275 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 24 gaatgcagcagaaaactgtca 44 ||||||||||||||||||||| Sbjct: 17529 gaatgcagcagaaaactgtca 17509
>emb|AL160191.3|CNS01RGT Human chromosome 14 DNA sequence BAC R-486O13 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 206256 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 24 gaatgcagcagaaaactgtca 44 ||||||||||||||||||||| Sbjct: 203549 gaatgcagcagaaaactgtca 203529
>gb|AC171274.2| Gallus gallus BAC clone CH261-121C13 from chromosome ul, complete sequence Length = 218983 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 109 ctagctacaaaacagcagcta 129 ||||||||||||||||||||| Sbjct: 214858 ctagctacaaaacagcagcta 214878
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 331 acagcttgtcctgcttcgga 350 |||||||||||||||||||| Sbjct: 2936270 acagcttgtcctgcttcgga 2936289
>gb|AC008810.8| Homo sapiens chromosome 5 clone CTD-2096I23, complete sequence Length = 157325 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 25 aatgcagcagaaaactgtcacctt 48 |||||||||||||||| ||||||| Sbjct: 79523 aatgcagcagaaaactatcacctt 79500
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 331 acagcttgtcctgcttcgga 350 |||||||||||||||||||| Sbjct: 3249258 acagcttgtcctgcttcgga 3249239
>gb|CP000009.1| Gluconobacter oxydans 621H, complete genome Length = 2702173 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 421 caggcaccgccgcgtcacat 440 |||||||||||||||||||| Sbjct: 634311 caggcaccgccgcgtcacat 634292 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,354,822 Number of Sequences: 3902068 Number of extensions: 4354822 Number of successful extensions: 86368 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 17 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 86195 Number of HSP's gapped (non-prelim): 168 length of query: 477 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 455 effective length of database: 17,147,199,772 effective search space: 7801975896260 effective search space used: 7801975896260 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
