ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd11n06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome... 52 0.002
2dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
3dbj|AK105585.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.002
4dbj|AK072181.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.002
5gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 52 0.002
6gb|BC077235.1| Xenopus laevis Ras-like without CAAX 1, mRNA (cDN... 44 0.60
7gb|AC102219.11| Mus musculus chromosome 15, clone RP24-96K14, co... 42 2.4
8gb|AC105066.12| Mus musculus chromosome 8, clone RP23-158A22, co... 42 2.4
9gb|AC124188.5| Mus musculus BAC clone RP23-240C17 from 6, comple... 42 2.4
10gb|AC115051.6| Mus musculus chromosome 1, clone RP24-340A23, com... 42 2.4
11gb|AC090363.16| Homo sapiens chromosome 18, clone RP11-885J19, c... 42 2.4
12gb|AC103814.2| Homo sapiens chromosome 18, clone CTD-3111I19, co... 42 2.4
13gb|AC157894.3| Medicago truncatula chromosome 7 BAC clone mth2-8... 42 2.4
14dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.4
15dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.4
16dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.4
17dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.4
18dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.4
19gb|AC126259.4| Mus musculus BAC clone RP23-330F19 from chromosom... 42 2.4
20dbj|AP003492.2| Oryza sativa (japonica cultivar-group) genomic D... 42 2.4
21dbj|AP005928.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.4
22dbj|AP005914.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.4
23dbj|AP005687.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.4
24dbj|AP005586.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.4
25dbj|AP004804.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.4
26dbj|AP004802.2| Oryza sativa (japonica cultivar-group) genomic D... 42 2.4
27dbj|AP004001.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.4
28gb|AC138765.9| Mus musculus chromosome 15, clone RP23-30B1, comp... 42 2.4
29gb|AC113326.9| Mus musculus chromosome 1, clone RP23-454G7, comp... 42 2.4
30gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 42 2.4
31emb|AL713939.6|CNS07YPL Oryza sativa chromosome 12, . BAC OJ1722... 42 2.4
32dbj|AB083481.1| Mesembryanthemum crystallinum MPC7 mRNA for prot... 42 2.4
33ref|XM_642546.1| Dictyostelium discoideum hypothetical protein (... 40 9.3
34ref|NM_189241.1| Oryza sativa (japonica cultivar-group), predic... 40 9.3
35ref|XM_420671.1| PREDICTED: Gallus gallus similar to radial spok... 40 9.3
36gb|AC147681.8| Canis Familiaris, clone XX-10A1, complete sequence 40 9.3
37gb|AF165141.4| Homo sapiens chromosome 8 clone XX-224L15 map 8q2... 40 9.3
38gb|AC084697.4| Homo sapiens chromosome 8 clone XX-6L9 map q21.13... 40 9.3
39gb|AC162936.3| Mus musculus BAC clone RP23-108K5 from chromosome... 40 9.3
40gb|AY329399.1| Rhyacornis fuliginosa oocyte maturation factor (c... 40 9.3
41gb|AY329385.1| Enicurus scouleri oocyte maturation factor (cmos)... 40 9.3
42ref|XM_818006.1| Trypanosoma brucei TREU927 GTPase activating pr... 40 9.3
43emb|AL590455.20| Human DNA sequence from clone RP11-278J17 on ch... 40 9.3
44emb|AL031671.12|HS688G8 Human DNA sequence from clone RP4-688G8 ... 40 9.3
45gb|AC090255.4| Homo sapiens chromosome 8, clone RP11-34M16, comp... 40 9.3
46gb|AC091606.8| Mus Musculus Strain C57BL6/J chromosome X BAC, RP... 40 9.3
47emb|BX649352.15| Zebrafish DNA sequence from clone DKEY-196J7 in... 40 9.3
48gb|AC025018.6| Homo sapiens chromosome 18, clone RP11-320C19, co... 40 9.3
49gb|AY056938.1| Muscicapa strophiata oocyte maturation factor Mos... 40 9.3
50gb|AY056933.1| Meliphaga analoga oocyte maturation factor Mos (c... 40 9.3
51gb|AC083760.5| Homo sapiens chromosome 18, clone CTD-388D15, com... 40 9.3
52gb|AE003849.1| Xylella fastidiosa 9a5c, complete genome 40 9.3
53gb|AC024301.10| Homo sapiens, clone RP11-686O16, complete sequence 40 9.3
54emb|BX936411.8| Mouse DNA sequence from clone RP24-62G2 on chrom... 40 9.3
55gb|AC016602.7| Homo sapiens chromosome 5 clone CTD-2061O12, comp... 40 9.3
56gb|AC160639.2| Mus musculus BAC clone RP23-103I12 from chromosom... 40 9.3
57gb|AC068472.5|AC068472 Homo sapiens chromosome 11, clone RP11-71... 40 9.3
58ref|NM_075285.2| Caenorhabditis elegans Nuclear Hormone Receptor... 40 9.3
59gb|AC067801.4|AC067801 Homo sapiens chromosome 18, clone RP11-58... 40 9.3
60gb|AC025754.4|AC025754 Homo sapiens chromosome 5 clone CTD-2024P... 40 9.3
61gb|AC074136.4| Homo sapiens chromosome 16 clone CTD-2318B16, com... 40 9.3
62gb|AC125017.12| Mus musculus chromosome 1, clone RP24-157E23, co... 40 9.3
63gb|AC073879.7| Homo sapiens BAC clone RP11-752K22 from 2, comple... 40 9.3
64gb|AC109826.4| Homo sapiens BAC clone RP11-764D5 from 2, complet... 40 9.3
65gb|AC147273.3| Pan troglodytes BAC clone RP43-116B18 from chromo... 40 9.3
66gb|AC019105.7| Homo sapiens BAC clone RP11-475A8 from 2, complet... 40 9.3
67gb|AC068888.35| Homo sapiens 12 BAC RP11-983P16 (Roswell Park Ca... 40 9.3
68gb|AC092620.2| Homo sapiens BAC clone RP11-231E19 from 2, comple... 40 9.3
69gb|AC108929.4| Homo sapiens BAC clone RP11-73N8 from 2, complete... 40 9.3
70gb|AC010000.5|AC010000 Homo sapiens chromosome 8 clone RP11-34M1... 40 9.3
71gb|AC091230.23| Homo sapiens chromosome 15, clone RP11-414J4, co... 40 9.3
72dbj|AP004613.3| Oryza sativa (japonica cultivar-group) genomic D... 40 9.3
73emb|AL732294.18| Mouse DNA sequence from clone RP23-59N7 on chro... 40 9.3
74dbj|AP001893.5| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 9.3
75dbj|AP000821.5| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 9.3
76dbj|AB053222.1| Homo sapiens gene for N-acetylglucosaminyltransf... 40 9.3
77gb|AE009442.1| Xylella fastidiosa Temecula1, complete genome 40 9.3
78emb|AL132853.2|CEY80D3A Caenorhabditis elegans YAC Y80D3A, compl... 40 9.3
79emb|AL773592.5| Mouse DNA sequence from clone RP23-336B11 on chr... 40 9.3 
>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0026K20 map S10559, complete sequence
          Length = 115996

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                   
Query: 643   gagctccttgcgcttacgctgctgttgcacctgagcat 680
             ||||| |||||||| |||||||||||||||| ||||||
Sbjct: 61841 gagcttcttgcgctgacgctgctgttgcaccggagcat 61878
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                      
Query: 643      gagctccttgcgcttacgctgctgttgcacctgagcat 680
                ||||| |||||||| |||||||||||||||| ||||||
Sbjct: 28335103 gagcttcttgcgctgacgctgctgttgcaccggagcat 28335140
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>dbj|AK105585.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-129-A01, full
            insert sequence
          Length = 1815

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                  
Query: 643  gagctccttgcgcttacgctgctgttgcacctgagcat 680
            ||||| |||||||| |||||||||||||||| ||||||
Sbjct: 1189 gagcttcttgcgctgacgctgctgttgcaccggagcat 1152
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>dbj|AK072181.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013140E05, full
            insert sequence
          Length = 1630

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                  
Query: 643  gagctccttgcgcttacgctgctgttgcacctgagcat 680
            ||||| |||||||| |||||||||||||||| ||||||
Sbjct: 1099 gagcttcttgcgctgacgctgctgttgcaccggagcat 1062
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                      
Query: 643      gagctccttgcgcttacgctgctgttgcacctgagcat 680
                ||||| |||||||| |||||||||||||||| ||||||
Sbjct: 28317552 gagcttcttgcgctgacgctgctgttgcaccggagcat 28317589
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>gb|BC077235.1| Xenopus laevis Ras-like without CAAX 1, mRNA (cDNA clone MGC:79097
            IMAGE:5048225), complete cds
          Length = 1960

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 329  gatggagaagaacataaacctg 350
            ||||||||||||||||||||||
Sbjct: 1065 gatggagaagaacataaacctg 1086
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>gb|AC102219.11| Mus musculus chromosome 15, clone RP24-96K14, complete sequence
          Length = 194425

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 545   cctcctccttcctcatcctcc 565
             |||||||||||||||||||||
Sbjct: 34324 cctcctccttcctcatcctcc 34304
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>gb|AC105066.12| Mus musculus chromosome 8, clone RP23-158A22, complete sequence
          Length = 238527

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 546    ctcctccttcctcatcctccc 566
              |||||||||||||||||||||
Sbjct: 123534 ctcctccttcctcatcctccc 123514
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>gb|AC124188.5| Mus musculus BAC clone RP23-240C17 from 6, complete sequence
          Length = 224756

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 545   cctcctccttcctcatcctcc 565
             |||||||||||||||||||||
Sbjct: 59348 cctcctccttcctcatcctcc 59368
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>gb|AC115051.6| Mus musculus chromosome 1, clone RP24-340A23, complete sequence
          Length = 158391

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 99    aattcaattgagaaaagcaaa 119
             |||||||||||||||||||||
Sbjct: 25137 aattcaattgagaaaagcaaa 25117
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>gb|AC090363.16| Homo sapiens chromosome 18, clone RP11-885J19, complete sequence
          Length = 152200

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 544    acctcctccttcctcatcctcccta 568
              |||||||||||||||| ||||||||
Sbjct: 127478 acctcctccttcctcagcctcccta 127502
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>gb|AC103814.2| Homo sapiens chromosome 18, clone CTD-3111I19, complete sequence
          Length = 172461

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 544    acctcctccttcctcatcctcccta 568
              |||||||||||||||| ||||||||
Sbjct: 162964 acctcctccttcctcagcctcccta 162988
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>gb|AC157894.3| Medicago truncatula chromosome 7 BAC clone mth2-85d15, complete
             sequence
          Length = 127331

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 323   gatgaagatggagaagaacat 343
             |||||||||||||||||||||
Sbjct: 39896 gatgaagatggagaagaacat 39876
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 113      aagcaaacatacatatggcat 133
                |||||||||||||||||||||
Sbjct: 12045298 aagcaaacatacatatggcat 12045318



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 113      aagcaaacatacatatggcat 133
                |||||||||||||||||||||
Sbjct: 11881412 aagcaaacatacatatggcat 11881432



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 113     aagcaaacatacatatggcat 133
               |||||||||||||||||||||
Sbjct: 6593486 aagcaaacatacatatggcat 6593506
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 113     aagcaaacatacatatggcat 133
               |||||||||||||||||||||
Sbjct: 8178839 aagcaaacatacatatggcat 8178819
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 113      aagcaaacatacatatggcat 133
                |||||||||||||||||||||
Sbjct: 14847247 aagcaaacatacatatggcat 14847267



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 113      aagcaaacatacatatggcat 133
                |||||||||||||||||||||
Sbjct: 14660619 aagcaaacatacatatggcat 14660639
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 113      aagcaaacatacatatggcat 133
                |||||||||||||||||||||
Sbjct: 10787466 aagcaaacatacatatggcat 10787446
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 113      aagcaaacatacatatggcat 133
                |||||||||||||||||||||
Sbjct: 22786570 aagcaaacatacatatggcat 22786590



 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 594      gctcctcctcccgctcacaccgcc 617
                ||||||||| ||||||||||||||
Sbjct: 16470422 gctcctccttccgctcacaccgcc 16470445
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>gb|AC126259.4| Mus musculus BAC clone RP23-330F19 from chromosome 6, complete sequence
          Length = 257100

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 545    cctcctccttcctcatcctcc 565
              |||||||||||||||||||||
Sbjct: 188780 cctcctccttcctcatcctcc 188800
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>dbj|AP003492.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0712E02
          Length = 158084

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 113    aagcaaacatacatatggcat 133
              |||||||||||||||||||||
Sbjct: 103959 aagcaaacatacatatggcat 103979
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>dbj|AP005928.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBb0031F23
          Length = 128090

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 113   aagcaaacatacatatggcat 133
             |||||||||||||||||||||
Sbjct: 62520 aagcaaacatacatatggcat 62540
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>dbj|AP005914.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBb0027A16
          Length = 129953

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 113    aagcaaacatacatatggcat 133
              |||||||||||||||||||||
Sbjct: 114880 aagcaaacatacatatggcat 114900
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>dbj|AP005687.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OSJNBa0019B22
          Length = 137457

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 113    aagcaaacatacatatggcat 133
              |||||||||||||||||||||
Sbjct: 102264 aagcaaacatacatatggcat 102244
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>dbj|AP005586.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
            clone:P0450F09
          Length = 148752

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 113  aagcaaacatacatatggcat 133
            |||||||||||||||||||||
Sbjct: 2761 aagcaaacatacatatggcat 2741
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>dbj|AP004804.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0680B05
          Length = 138741

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 113   aagcaaacatacatatggcat 133
             |||||||||||||||||||||
Sbjct: 46486 aagcaaacatacatatggcat 46506
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>dbj|AP004802.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0640D01
          Length = 164996

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 113    aagcaaacatacatatggcat 133
              |||||||||||||||||||||
Sbjct: 158331 aagcaaacatacatatggcat 158351
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>dbj|AP004001.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1115_D03
          Length = 169378

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 113    aagcaaacatacatatggcat 133
              |||||||||||||||||||||
Sbjct: 126947 aagcaaacatacatatggcat 126927
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>gb|AC138765.9| Mus musculus chromosome 15, clone RP23-30B1, complete sequence
          Length = 204614

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 545   cctcctccttcctcatcctcc 565
             |||||||||||||||||||||
Sbjct: 16566 cctcctccttcctcatcctcc 16586
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>gb|AC113326.9| Mus musculus chromosome 1, clone RP23-454G7, complete sequence
          Length = 192734

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 99     aattcaattgagaaaagcaaa 119
              |||||||||||||||||||||
Sbjct: 164375 aattcaattgagaaaagcaaa 164355
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 113      aagcaaacatacatatggcat 133
                |||||||||||||||||||||
Sbjct: 11931905 aagcaaacatacatatggcat 11931885



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 113      aagcaaacatacatatggcat 133
                |||||||||||||||||||||
Sbjct: 11881082 aagcaaacatacatatggcat 11881102



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 113     aagcaaacatacatatggcat 133
               |||||||||||||||||||||
Sbjct: 6593361 aagcaaacatacatatggcat 6593381
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>emb|AL713939.6|CNS07YPL Oryza sativa chromosome 12, . BAC OJ1722_D03 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 171861

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 113   aagcaaacatacatatggcat 133
             |||||||||||||||||||||
Sbjct: 11491 aagcaaacatacatatggcat 11511
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>dbj|AB083481.1| Mesembryanthemum crystallinum MPC7 mRNA for protein phosphatase 2C,
           complete cds
          Length = 1769

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 87  aatgctaacttgaattcaatt 107
           |||||||||||||||||||||
Sbjct: 235 aatgctaacttgaattcaatt 215
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>ref|XM_642546.1| Dictyostelium discoideum hypothetical protein (DDB0216593), partial
           mRNA
          Length = 1620

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 323 gatgaagatggagaagaaca 342
           ||||||||||||||||||||
Sbjct: 614 gatgaagatggagaagaaca 595
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>ref|NM_189241.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 492

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 594 gctcctcctcccgctcacaccgcc 617
           ||||||||| ||||||||||||||
Sbjct: 419 gctcctccttccgctcacaccgcc 442
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>ref|XM_420671.1| PREDICTED: Gallus gallus similar to radial spokehead-like 1; ortholog
            of mouse radial spokehead-like 1 (LOC422717), mRNA
          Length = 2067

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 545  cctcctccttcctcatcctc 564
            ||||||||||||||||||||
Sbjct: 1363 cctcctccttcctcatcctc 1344
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>gb|AC147681.8| Canis Familiaris, clone XX-10A1, complete sequence
          Length = 160031

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 545    cctcctccttcctcatcctc 564
              ||||||||||||||||||||
Sbjct: 116440 cctcctccttcctcatcctc 116459
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>gb|AF165141.4| Homo sapiens chromosome 8 clone XX-224L15 map 8q21.13, complete
             sequence
          Length = 46919

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 321   tggatgaagatggagaagaa 340
             ||||||||||||||||||||
Sbjct: 40300 tggatgaagatggagaagaa 40281
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>gb|AC084697.4| Homo sapiens chromosome 8 clone XX-6L9 map q21.13, complete sequence
          Length = 107517

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 321   tggatgaagatggagaagaa 340
             ||||||||||||||||||||
Sbjct: 65371 tggatgaagatggagaagaa 65352
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>gb|AC162936.3| Mus musculus BAC clone RP23-108K5 from chromosome 14, complete sequence
          Length = 236917

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 320   ttggatgaagatggagaagaacat 343
             ||||| ||||||||||||||||||
Sbjct: 90952 ttggaagaagatggagaagaacat 90975
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>gb|AY329399.1| Rhyacornis fuliginosa oocyte maturation factor (cmos) gene, partial
           cds
          Length = 598

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 547 tcctccttcctcatcctccc 566
           ||||||||||||||||||||
Sbjct: 272 tcctccttcctcatcctccc 291
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>gb|AY329385.1| Enicurus scouleri oocyte maturation factor (cmos) gene, partial cds
          Length = 598

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 547 tcctccttcctcatcctccc 566
           ||||||||||||||||||||
Sbjct: 272 tcctccttcctcatcctccc 291
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>ref|XM_818006.1| Trypanosoma brucei TREU927 GTPase activating protein
           (Tb10.6k15.1790) partial mRNA
          Length = 1023

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 243 ccttttcttctgagcctataaaaa 266
           ||||||||||||||| ||||||||
Sbjct: 109 ccttttcttctgagcttataaaaa 86
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>emb|AL590455.20| Human DNA sequence from clone RP11-278J17 on chromosome 1 Contains the 3'
              end of the CDKN2C gene for cyclin-dependent kinase
              inhibitor 2C (p18, inhibits CDK4), complete sequence
          Length = 128024

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 547    tcctccttcctcatcctccctaag 570
              ||||||||||||| ||||||||||
Sbjct: 118207 tcctccttcctcagcctccctaag 118184
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>emb|AL031671.12|HS688G8 Human DNA sequence from clone RP4-688G8 on chromosome 20q11.2-12
             Contains the RPS2L1 gene for ribosomal protein S2-like 1
             (pseudogene), the gene for protease inhibitor WAP9 (WAP9),
             the C20orf46 gene for WAP10 precursor, the gene for
             protease inhibitor WAP11 (WAP11), the 3' end of the gene
             for protease inhibitor WAP12 (WAP12) and a CpG island,
             complete sequence
          Length = 116380

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 547   tcctccttcctcatcctccc 566
             ||||||||||||||||||||
Sbjct: 36926 tcctccttcctcatcctccc 36945
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>gb|AC090255.4| Homo sapiens chromosome 8, clone RP11-34M16, complete sequence
          Length = 145705

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 321   tggatgaagatggagaagaa 340
             ||||||||||||||||||||
Sbjct: 51977 tggatgaagatggagaagaa 51958
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>gb|AC091606.8| Mus Musculus Strain C57BL6/J chromosome X BAC, RP23-75P20, complete
             sequence
          Length = 234105

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 417   cttcctttcccgggcatccc 436
             ||||||||||||||||||||
Sbjct: 41795 cttcctttcccgggcatccc 41776
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>emb|BX649352.15| Zebrafish DNA sequence from clone DKEY-196J7 in linkage group 1,
             complete sequence
          Length = 226763

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 261   taaaaagttgattttgatga 280
             ||||||||||||||||||||
Sbjct: 43760 taaaaagttgattttgatga 43741
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>gb|AC025018.6| Homo sapiens chromosome 18, clone RP11-320C19, complete sequence
          Length = 159942

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 547    tcctccttcctcatcctccc 566
              ||||||||||||||||||||
Sbjct: 106897 tcctccttcctcatcctccc 106916
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>gb|AY056938.1| Muscicapa strophiata oocyte maturation factor Mos (c-mos)
           protooncogene, partial cds
          Length = 607

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 547 tcctccttcctcatcctccc 566
           ||||||||||||||||||||
Sbjct: 328 tcctccttcctcatcctccc 309
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>gb|AY056933.1| Meliphaga analoga oocyte maturation factor Mos (c-mos)
           protooncogene, partial cds
          Length = 613

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 547 tcctccttcctcatcctccc 566
           ||||||||||||||||||||
Sbjct: 334 tcctccttcctcatcctccc 315
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>gb|AC083760.5| Homo sapiens chromosome 18, clone CTD-388D15, complete sequence
          Length = 109851

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 547    tcctccttcctcatcctccc 566
              ||||||||||||||||||||
Sbjct: 102284 tcctccttcctcatcctccc 102265
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>gb|AE003849.1| Xylella fastidiosa 9a5c, complete genome
          Length = 2679306

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 309     gccaaggcacattggatgaa 328
               ||||||||||||||||||||
Sbjct: 2376880 gccaaggcacattggatgaa 2376861



 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 309    gccaaggcacattggatgaa 328
              ||||||||||||||||||||
Sbjct: 675521 gccaaggcacattggatgaa 675540
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>gb|AC024301.10| Homo sapiens, clone RP11-686O16, complete sequence
          Length = 195269

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 547    tcctccttcctcatcctccc 566
              ||||||||||||||||||||
Sbjct: 186698 tcctccttcctcatcctccc 186717
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>emb|BX936411.8| Mouse DNA sequence from clone RP24-62G2 on chromosome 2, complete
             sequence
          Length = 77848

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 545   cctcctccttcctcatcctc 564
             ||||||||||||||||||||
Sbjct: 11675 cctcctccttcctcatcctc 11694
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>gb|AC016602.7| Homo sapiens chromosome 5 clone CTD-2061O12, complete sequence
          Length = 186265

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 547    tcctccttcctcatcctccctaag 570
              ||||||||||||| ||||||||||
Sbjct: 157540 tcctccttcctcagcctccctaag 157563
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>gb|AC160639.2| Mus musculus BAC clone RP23-103I12 from chromosome 14, complete
             sequence
          Length = 195224

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 320   ttggatgaagatggagaagaacat 343
             ||||| ||||||||||||||||||
Sbjct: 32367 ttggaagaagatggagaagaacat 32344
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>gb|AC068472.5|AC068472 Homo sapiens chromosome 11, clone RP11-713P14, complete sequence
          Length = 183659

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 108   gagaaaagcaaacatacata 127
             ||||||||||||||||||||
Sbjct: 83976 gagaaaagcaaacatacata 83995
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>ref|NM_075285.2| Caenorhabditis elegans Nuclear Hormone Receptor family member
           (nhr-243) (nhr-243) mRNA, complete cds
          Length = 1275

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 321 tggatgaagatggagaagaa 340
           ||||||||||||||||||||
Sbjct: 37  tggatgaagatggagaagaa 18
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>gb|AC067801.4|AC067801 Homo sapiens chromosome 18, clone RP11-583B12, complete sequence
          Length = 174938

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 547    tcctccttcctcatcctccc 566
              ||||||||||||||||||||
Sbjct: 170299 tcctccttcctcatcctccc 170318
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>gb|AC025754.4|AC025754 Homo sapiens chromosome 5 clone CTD-2024P10, complete sequence
          Length = 157365

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 547   tcctccttcctcatcctccctaag 570
             ||||||||||||| ||||||||||
Sbjct: 94827 tcctccttcctcagcctccctaag 94804
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>gb|AC074136.4| Homo sapiens chromosome 16 clone CTD-2318B16, complete sequence
          Length = 105956

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 549   ctccttcctcatcctcccta 568
             ||||||||||||||||||||
Sbjct: 43864 ctccttcctcatcctcccta 43883
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>gb|AC125017.12| Mus musculus chromosome 1, clone RP24-157E23, complete sequence
          Length = 189884

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 546    ctcctccttcctcatcctcc 565
              ||||||||||||||||||||
Sbjct: 131146 ctcctccttcctcatcctcc 131127
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>gb|AC073879.7| Homo sapiens BAC clone RP11-752K22 from 2, complete sequence
          Length = 188181

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 262    aaaaagttgattttgatgac 281
              ||||||||||||||||||||
Sbjct: 175587 aaaaagttgattttgatgac 175606
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>gb|AC109826.4| Homo sapiens BAC clone RP11-764D5 from 2, complete sequence
          Length = 87746

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 45    tttgattccatagcccctacatca 68
             |||||||||| |||||||||||||
Sbjct: 26385 tttgattccagagcccctacatca 26408
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>gb|AC147273.3| Pan troglodytes BAC clone RP43-116B18 from chromosome 7, complete
              sequence
          Length = 178716

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 547    tcctccttcctcatcctccctaag 570
              ||||||||||||| ||||||||||
Sbjct: 125157 tcctccttcctcagcctccctaag 125180
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>gb|AC019105.7| Homo sapiens BAC clone RP11-475A8 from 2, complete sequence
          Length = 170491

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 306   gtagccaaggcacattggatgaag 329
             |||||||||||||||||| |||||
Sbjct: 75735 gtagccaaggcacattggctgaag 75712
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>gb|AC068888.35| Homo sapiens 12 BAC RP11-983P16 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 95824

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 547   tcctccttcctcatcctccc 566
             ||||||||||||||||||||
Sbjct: 36026 tcctccttcctcatcctccc 36007
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>gb|AC092620.2| Homo sapiens BAC clone RP11-231E19 from 2, complete sequence
          Length = 151037

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 547   tcctccttcctcatcctccctaag 570
             ||||||| ||||||||||||||||
Sbjct: 18809 tcctcctgcctcatcctccctaag 18786
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>gb|AC108929.4| Homo sapiens BAC clone RP11-73N8 from 2, complete sequence
          Length = 112211

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 262   aaaaagttgattttgatgac 281
             ||||||||||||||||||||
Sbjct: 86374 aaaaagttgattttgatgac 86393
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>gb|AC010000.5|AC010000 Homo sapiens chromosome 8 clone RP11-34M16, complete sequence
          Length = 145588

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 321   tggatgaagatggagaagaa 340
             ||||||||||||||||||||
Sbjct: 51861 tggatgaagatggagaagaa 51842
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>gb|AC091230.23| Homo sapiens chromosome 15, clone RP11-414J4, complete sequence
          Length = 206482

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 547    tcctccttcctcatcctccctaag 570
              ||||||| ||||||||||||||||
Sbjct: 169811 tcctcctgcctcatcctccctaag 169834
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>dbj|AP004613.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OJ1123_G09
          Length = 107491

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 594   gctcctcctcccgctcacaccgcc 617
             ||||||||| ||||||||||||||
Sbjct: 78019 gctcctccttccgctcacaccgcc 78042
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>emb|AL732294.18| Mouse DNA sequence from clone RP23-59N7 on chromosome X, complete
             sequence
          Length = 112893

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 417   cttcctttcccgggcatccc 436
             ||||||||||||||||||||
Sbjct: 47698 cttcctttcccgggcatccc 47679
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>dbj|AP001893.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-50B3, complete
             sequence
          Length = 157702

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 547   tcctccttcctcatcctccc 566
             ||||||||||||||||||||
Sbjct: 28548 tcctccttcctcatcctccc 28567
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>dbj|AP000821.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-673E11, complete
              sequence
          Length = 180821

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 547    tcctccttcctcatcctccc 566
              ||||||||||||||||||||
Sbjct: 121177 tcctccttcctcatcctccc 121196
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>dbj|AB053222.1| Homo sapiens gene for N-acetylglucosaminyltransferase IVa, partial
            cds
          Length = 12562

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 45   tttgattccatagcccctacatca 68
            |||||||||| |||||||||||||
Sbjct: 3236 tttgattccagagcccctacatca 3213
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>gb|AE009442.1| Xylella fastidiosa Temecula1, complete genome
          Length = 2519802

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 309     gccaaggcacattggatgaa 328
               ||||||||||||||||||||
Sbjct: 1303334 gccaaggcacattggatgaa 1303315



 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 309    gccaaggcacattggatgaa 328
              ||||||||||||||||||||
Sbjct: 463558 gccaaggcacattggatgaa 463539
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>emb|AL132853.2|CEY80D3A Caenorhabditis elegans YAC Y80D3A, complete sequence
          Length = 102495

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 321   tggatgaagatggagaagaa 340
             ||||||||||||||||||||
Sbjct: 44810 tggatgaagatggagaagaa 44829
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>emb|AL773592.5| Mouse DNA sequence from clone RP23-336B11 on chromosome 4, complete
              sequence
          Length = 219956

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 547    tcctccttcctcatcctccc 566
              ||||||||||||||||||||
Sbjct: 194055 tcctccttcctcatcctccc 194074


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,598,696
Number of Sequences: 3902068
Number of extensions: 6598696
Number of successful extensions: 142988
Number of sequences better than 10.0: 79
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 142367
Number of HSP's gapped (non-prelim): 621
length of query: 680
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 657
effective length of database: 17,143,297,704
effective search space: 11263146591528
effective search space used: 11263146591528
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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