ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd11m20 |
|---|---|
| Clone Library Name | barley_pub |
>YBF5_YEAST (P34220) Putative deoxyribonuclease YBL055c (EC 3.1.21.-)| Length = 418 Score = 117 bits (292), Expect = 3e-26 Identities = 74/193 (38%), Positives = 107/193 (55%), Gaps = 43/193 (22%) Frame = -1 Query: 616 LHMRAAGEDFSEML-----------------------SQNLYRFPGG---VTHSFTGTAE 515 LHMR+A +DF ++L S Y+F V HSFTG+A Sbjct: 225 LHMRSACDDFVQILERFIAGFTDERDTFQLQKLGASSSSGFYKFHPDRKLVVHSFTGSAI 284 Query: 514 EREKLLSIE-NMFIGINGCSLKTIENLEIVRGIPAERMMIETDSPYCDIKNTHAGIQFV- 341 + +KLL++ N+FIG+NGCSL+T ENL +V+ IP ER+++ETD+P+C+IK THA Q++ Sbjct: 285 DLQKLLNLSPNIFIGVNGCSLRTEENLAVVKQIPTERLLLETDAPWCEIKRTHASFQYLA 344 Query: 340 -------------KSIWPSKKKEKY--EPGITVKGRNEPCLVRQVLEVVAGCKGIADIEG 206 KS+ +K +K E VKGRNEPC + QV VV+ K + D+ Sbjct: 345 KYQEVRDFEYPAFKSVKKNKLADKLNAEELYMVKGRNEPCNMEQVAIVVSEVKDV-DLAT 403 Query: 205 LSKTLYHNTCRLF 167 L T + TC++F Sbjct: 404 LIDTTWKTTCKIF 416
>Y454_HAEIN (P44718) Putative deoxyribonuclease HI0454 (EC 3.1.21.-)| Length = 260 Score = 63.9 bits (154), Expect = 4e-10 Identities = 50/152 (32%), Positives = 74/152 (48%), Gaps = 2/152 (1%) Frame = -1 Query: 616 LHMRAAGEDFSEMLSQNLYRFPGGVTHSFTGTAEEREKLLSIENMFIGING-CSLKTIEN 440 +H R+AG+D ML Q+ GGV H FT T E +K L + +I +G + K E Sbjct: 130 IHTRSAGDDTIAMLRQHRAEKCGGVIHCFTETMEFXKKALDL-GFYISCSGIVTFKNAEA 188 Query: 439 L-EIVRGIPAERMMIETDSPYCDIKNTHAGIQFVKSIWPSKKKEKYEPGITVKGRNEPCL 263 + E++R +P ER+++ETDSPY + P + KE N+P Sbjct: 189 IREVIRYVPMERLLVETDSPYL-------------APVPYRGKE-----------NQPAY 224 Query: 262 VRQVLEVVAGCKGIADIEGLSKTLYHNTCRLF 167 R+V E VA KG++ E ++ N RLF Sbjct: 225 TREVCEYVATLKGVS-AEAFAQITTQNFERLF 255
>TATD_ECOLI (P27859) Deoxyribonuclease tatD (EC 3.1.21.-) (DNase tatD)| Length = 260 Score = 59.3 bits (142), Expect = 9e-09 Identities = 47/153 (30%), Positives = 71/153 (46%), Gaps = 3/153 (1%) Frame = -1 Query: 616 LHMRAAGEDFSEMLSQNLYRFPGGVTHSFTGTAEEREKLLSIENMFIGINGC---SLKTI 446 +H R A E F +L L + PG V H FTGT EE + ++ ++IGI G + + Sbjct: 126 MHCRDAHERFMTLLEPWLDKLPGAVLHCFTGTREEMQACVA-HGIYIGITGWVCDERRGL 184 Query: 445 ENLEIVRGIPAERMMIETDSPYCDIKNTHAGIQFVKSIWPSKKKEKYEPGITVKGRNEPC 266 E E++ IPAE+++IETD+PY + + P RNEP Sbjct: 185 ELRELLPLIPAEKLLIETDAPYL----------LPRDLTPKPSSR----------RNEPA 224 Query: 265 LVRQVLEVVAGCKGIADIEGLSKTLYHNTCRLF 167 + +L+ +A +G D L+ T N LF Sbjct: 225 HLPHILQRIAHWRG-EDAAWLAATTDANVKTLF 256
>YCFH_ECOLI (P0AFQ7) Putative deoxyribonuclease ycfH (EC 3.1.21.-)| Length = 265 Score = 55.8 bits (133), Expect = 1e-07 Identities = 47/152 (30%), Positives = 70/152 (46%), Gaps = 2/152 (1%) Frame = -1 Query: 616 LHMRAAGEDFSEMLSQNLYRFPGGVTHSFTGTAEEREKLLSIENMFIGINGC-SLKTIEN 440 +H R A D +L + GGV H FT E KLL + +I +G + + E Sbjct: 129 VHTRDARADTLAILREEKVTDCGGVLHCFTEDRETAGKLLDL-GFYISFSGIVTFRNAEQ 187 Query: 439 L-EIVRGIPAERMMIETDSPYCDIKNTHAGIQFVKSIWPSKKKEKYEPGITVKGRNEPCL 263 L + R +P +R+++ETDSPY + P + KE N+P + Sbjct: 188 LRDAARYVPLDRLLVETDSPYL-------------APVPHRGKE-----------NQPAM 223 Query: 262 VRQVLEVVAGCKGIADIEGLSKTLYHNTCRLF 167 VR V E +A KG+A +E L++ N RLF Sbjct: 224 VRDVAEYMAVLKGVA-VEELAQVTTDNFARLF 254
>YCFH_ECOL6 (P0AFQ8) Putative deoxyribonuclease ycfH (EC 3.1.21.-)| Length = 265 Score = 55.8 bits (133), Expect = 1e-07 Identities = 47/152 (30%), Positives = 70/152 (46%), Gaps = 2/152 (1%) Frame = -1 Query: 616 LHMRAAGEDFSEMLSQNLYRFPGGVTHSFTGTAEEREKLLSIENMFIGINGC-SLKTIEN 440 +H R A D +L + GGV H FT E KLL + +I +G + + E Sbjct: 129 VHTRDARADTLAILREEKVTDCGGVLHCFTEDRETAGKLLDL-GFYISFSGIVTFRNAEQ 187 Query: 439 L-EIVRGIPAERMMIETDSPYCDIKNTHAGIQFVKSIWPSKKKEKYEPGITVKGRNEPCL 263 L + R +P +R+++ETDSPY + P + KE N+P + Sbjct: 188 LRDAARYVPLDRLLVETDSPYL-------------APVPHRGKE-----------NQPAM 223 Query: 262 VRQVLEVVAGCKGIADIEGLSKTLYHNTCRLF 167 VR V E +A KG+A +E L++ N RLF Sbjct: 224 VRDVAEYMAVLKGVA-VEELAQVTTDNFARLF 254
>YCFH_ECO57 (P0AFQ9) Putative deoxyribonuclease ycfH (EC 3.1.21.-)| Length = 265 Score = 55.8 bits (133), Expect = 1e-07 Identities = 47/152 (30%), Positives = 70/152 (46%), Gaps = 2/152 (1%) Frame = -1 Query: 616 LHMRAAGEDFSEMLSQNLYRFPGGVTHSFTGTAEEREKLLSIENMFIGINGC-SLKTIEN 440 +H R A D +L + GGV H FT E KLL + +I +G + + E Sbjct: 129 VHTRDARADTLAILREEKVTDCGGVLHCFTEDRETAGKLLDL-GFYISFSGIVTFRNAEQ 187 Query: 439 L-EIVRGIPAERMMIETDSPYCDIKNTHAGIQFVKSIWPSKKKEKYEPGITVKGRNEPCL 263 L + R +P +R+++ETDSPY + P + KE N+P + Sbjct: 188 LRDAARYVPLDRLLVETDSPYL-------------APVPHRGKE-----------NQPAM 223 Query: 262 VRQVLEVVAGCKGIADIEGLSKTLYHNTCRLF 167 VR V E +A KG+A +E L++ N RLF Sbjct: 224 VRDVAEYMAVLKGVA-VEELAQVTTDNFARLF 254
>YABD_BACSU (P37545) Putative deoxyribonuclease yabD (EC 3.1.21.-)| Length = 255 Score = 50.4 bits (119), Expect = 4e-06 Identities = 43/152 (28%), Positives = 68/152 (44%), Gaps = 2/152 (1%) Frame = -1 Query: 616 LHMRAAGEDFSEMLSQNLYRFPGGVTHSFTGTAEEREKLLSIENMFIGING-CSLKTIEN 440 +H R A ED +L + GG+ H FTG+AE + + + N ++ G + K + Sbjct: 127 IHNRDATEDVVTILKEEGAEAVGGIMHCFTGSAEVARECMKM-NFYLSFGGPVTFKNAKK 185 Query: 439 -LEIVRGIPAERMMIETDSPYCDIKNTHAGIQFVKSIWPSKKKEKYEPGITVKGRNEPCL 263 E+V+ IP +R++IETD P+ + P + K RNEP Sbjct: 186 PKEVVKEIPNDRLLIETDCPF---------------LTPHPFRGK---------RNEPSY 221 Query: 262 VRQVLEVVAGCKGIADIEGLSKTLYHNTCRLF 167 V+ V E +A K + E ++ N RLF Sbjct: 222 VKYVAEQIAELKEMT-FEEIASITTENAKRLF 252
>Y355_BUCAI (P57436) Putative deoxyribonuclease BU355 (EC 3.1.21.-)| Length = 264 Score = 47.8 bits (112), Expect = 3e-05 Identities = 30/81 (37%), Positives = 43/81 (53%), Gaps = 2/81 (2%) Frame = -1 Query: 616 LHMRAAGEDFSEMLSQNLYRFPGGVTHSFTGTAEEREKLLSIENMFIGINGCSL--KTIE 443 +H R A ED ++L + GV HSFTG KLL + +I +G ++E Sbjct: 137 VHSRNASEDTIKILQEENAEKCKGVLHSFTGDYNTACKLLDL-GFYISCSGIITFKNSLE 195 Query: 442 NLEIVRGIPAERMMIETDSPY 380 + +R IP R++IETDSPY Sbjct: 196 LCKTIRKIPLNRLLIETDSPY 216
>Y343_BUCAP (Q8K9J1) Putative deoxyribonuclease BUsg343 (EC 3.1.21.-)| Length = 264 Score = 46.6 bits (109), Expect = 6e-05 Identities = 28/81 (34%), Positives = 46/81 (56%), Gaps = 2/81 (2%) Frame = -1 Query: 616 LHMRAAGEDFSEMLSQNLYRFPGGVTHSFTGTAEEREKLLSIENMFIGINGCSL--KTIE 443 +H R A +D ++L + GG+ HSFT + + +LL + +I +G K+IE Sbjct: 135 IHSRNAIKDTIKILKEENAEKCGGILHSFTESEKSAFELLDM-GFYISFSGIITFKKSIE 193 Query: 442 NLEIVRGIPAERMMIETDSPY 380 ++ IP E+++IETDSPY Sbjct: 194 LCNTLKKIPLEKLLIETDSPY 214
>Y1786_SYNY3 (P73335) Putative deoxyribonuclease sll1786 (EC 3.1.21.-)| Length = 261 Score = 40.0 bits (92), Expect = 0.005 Identities = 39/154 (25%), Positives = 68/154 (44%), Gaps = 4/154 (2%) Frame = -1 Query: 616 LHMRAAGEDFSEMLS--QNLYRFPGGVTHSFTGTAEEREKLLSIENMFIGINGC-SLKTI 446 +H R A + ++L+ Q GV H + GT EE + L + +I +G + K Sbjct: 128 IHCRDAAQTMRQVLTDFQAESGPVAGVMHCWGGTPEETQWFLDL-GFYISFSGTVTFKKA 186 Query: 445 ENLEI-VRGIPAERMMIETDSPYCDIKNTHAGIQFVKSIWPSKKKEKYEPGITVKGRNEP 269 E ++ + +P +R+++ETD P+ + P ++ K RNEP Sbjct: 187 EGIQASAQMVPPDRLLVETDCPF---------------LAPVPQRGK---------RNEP 222 Query: 268 CLVRQVLEVVAGCKGIADIEGLSKTLYHNTCRLF 167 VR V E +A + + +E L++ N LF Sbjct: 223 AFVRHVAEAIAALRHV-PLETLAQQTTTNARNLF 255
>TATD2_HUMAN (Q93075) TatD DNase domain-containing deoxyribonuclease 2 (EC| 3.1.21.-) Length = 761 Score = 39.3 bits (90), Expect = 0.009 Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 3/82 (3%) Frame = -1 Query: 616 LHMRAAGEDFSEMLSQNLYRFPGGVTHSFTGTAEEREKLLS-IENMFIGINGCSLKTI-- 446 +H R A ED E++ + + H FTG+ E LL NM +G + Sbjct: 629 IHCREADEDLLEIMKKFVPPDYKIHRHCFTGSYPVIEPLLKYFPNMSVGFTAVLTYSSAW 688 Query: 445 ENLEIVRGIPAERMMIETDSPY 380 E E +R IP ER+++ETD+PY Sbjct: 689 EAREALRQIPLERIIVETDAPY 710
>Y325_BUCBP (Q89AG7) Putative deoxyribonuclease bbp_325 (EC 3.1.21.-)| Length = 265 Score = 38.9 bits (89), Expect = 0.012 Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 4/83 (4%) Frame = -1 Query: 616 LHMRAAGEDFSEMLSQNLYRFPGGVTHSFTGTAEEREKLLSIENMFIGINGCSLKTIENL 437 +H R + D +L + + GV HSFT LL NM I+ + T +N Sbjct: 130 IHTRNSINDTINILKEENSKQCIGVLHSFTEDMHSARILL---NMGFYISFSGIVTFKNS 186 Query: 436 EIV----RGIPAERMMIETDSPY 380 +IV + +P +R++IETDSPY Sbjct: 187 KIVHETAKFVPIDRILIETDSPY 209
>Y1582_METJA (Q58977) Putative deoxyribonuclease MJ1582 (EC 3.1.21.-)| Length = 249 Score = 35.8 bits (81), Expect = 0.10 Identities = 32/125 (25%), Positives = 52/125 (41%), Gaps = 1/125 (0%) Frame = -1 Query: 538 HSFTGTAEEREKLLSIENMFIGINGCSLKTIENLEIVRGIPAERMMIETDSPYCD-IKNT 362 H ++G E K + E I I+ + + ++V + E + ETDSPY IK T Sbjct: 150 HCYSGDVE-LAKEIGKEGHLISISTLVCFSEHHKKLVESLDLEYLTTETDSPYLSPIKGT 208 Query: 361 HAGIQFVKSIWPSKKKEKYEPGITVKGRNEPCLVRQVLEVVAGCKGIADIEGLSKTLYHN 182 +NEP V+ V+E +A K + ++E + +Y N Sbjct: 209 ---------------------------KNEPKNVKLVIEEIAKIKEM-EVEEVKDVIYKN 240 Query: 181 TCRLF 167 TC+ F Sbjct: 241 TCKFF 245
>Y009_MYCGE (P47255) Putative deoxyribonuclease MG009 (EC 3.1.21.-)| Length = 262 Score = 33.5 bits (75), Expect = 0.51 Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 6/85 (7%) Frame = -1 Query: 616 LHMRAAGEDFSEMLSQNLYRFPGGVTHSFTGTAEEREKLLSIENM----FIGINGC-SLK 452 LH+R A E E+L++ P + H F+ +KLLS++++ F I G + K Sbjct: 131 LHIRDAHEKIYEILTRLKPTQPV-IFHCFSQDINIAKKLLSLKDLNIDIFFSIPGIVTFK 189 Query: 451 TIENL-EIVRGIPAERMMIETDSPY 380 + L E ++ IP+E ++ ETDSP+ Sbjct: 190 NAQALHEALKIIPSELLLSETDSPW 214
>Y009_MYCPN (P78005) Putative deoxyribonuclease MG009 homolog (EC 3.1.21.-)| (D12_orf261) Length = 261 Score = 32.3 bits (72), Expect = 1.1 Identities = 42/158 (26%), Positives = 67/158 (42%), Gaps = 7/158 (4%) Frame = -1 Query: 616 LHMRAAGEDFSEMLSQNLYRFPGGVTHSFTGTAEEREKLLSIENM----FIGINGC-SLK 452 LH+R E E+L + + P V H F+ KLL++ + + I G + K Sbjct: 131 LHVRDVHERIYEVLKRLKPKQPV-VFHCFSEDTNTALKLLTLREVGLKVYFSIPGIVTFK 189 Query: 451 TIENLEIVRG-IPAERMMIETDSPYCDIKNTHAGIQF-VKSIWPSKKKEKYEPGITVKGR 278 +NL+ IP E ++ ETDSPY A + F K+ WP Sbjct: 190 NAKNLQAALSVIPTELLLSETDSPYL------APVPFRGKTNWPE--------------- 228 Query: 277 NEPCLVRQVLEVVAGCKGIADIEGLSKTLYHNTCRLFF 164 C+V V + +A K + E + + + HN +LF+ Sbjct: 229 ---CVVHTV-QTIADIKQVPLAE-IKQAIVHNAKKLFW 261
>YJJV_ECOLI (P39408) Putative deoxyribonuclease yjjV (EC 3.1.21.-)| Length = 259 Score = 31.6 bits (70), Expect = 1.9 Identities = 14/57 (24%), Positives = 32/57 (56%), Gaps = 2/57 (3%) Frame = -1 Query: 547 GVTHSFTGTAEEREKLLSIENMFIGINGCSL--KTIENLEIVRGIPAERMMIETDSP 383 GV H F+G+ ++ E+ + + IG+ G + + +++ +P +++ETD+P Sbjct: 154 GVVHGFSGSLQQAERFVQL-GYKIGVGGTITYPRASKTRDVIAKLPLASLLLETDAP 209
>GRIP2_HUMAN (Q9C0E4) Glutamate receptor-interacting protein 2 (GRIP2 protein)| Length = 1043 Score = 30.8 bits (68), Expect = 3.3 Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 1/95 (1%) Frame = -1 Query: 550 GGVTHSFTGTAEEREKLLSIENMFIGINGCSLKTIENLEIVRGI-PAERMMIETDSPYCD 374 G V H TGT E +KLL+I+N I ++ C ++ + ++I+R ++ I D D Sbjct: 591 GSVAHR-TGTLEPGDKLLAIDN--IRLDNCPME--DAVQILRQCEDLVKLKIRKDEDNSD 645 Query: 373 IKNTHAGIQFVKSIWPSKKKEKYEPGITVKGRNEP 269 T + + + K+ GIT+ G EP Sbjct: 646 ELETTGAVSYTVEL----KRYGGPLGITISGTEEP 676
>UVRC_CLOAB (Q97LP6) UvrABC system protein C (Protein uvrC) (Excinuclease ABC| subunit C) Length = 623 Score = 30.4 bits (67), Expect = 4.3 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 1/60 (1%) Frame = -1 Query: 385 PYCDIKNTHAGIQFVKSIWPSKKKEKYEPGITVKGRN-EPCLVRQVLEVVAGCKGIADIE 209 PY D+ H + ++ I+P + +KY I G N PCL + A C G+ E Sbjct: 130 PYPDVSAVHETVDLMRRIFPIRTCKKY---IKENGENIRPCLNYHIKRCNAPCAGLISKE 186
>EMBB_MYCLE (Q9CDA9) Probable arabinosyltransferase B (EC 2.4.2.-)| Length = 1083 Score = 30.4 bits (67), Expect = 4.3 Identities = 17/69 (24%), Positives = 35/69 (50%), Gaps = 3/69 (4%) Frame = -1 Query: 550 GGVTHSFTGTAEEREKLLSIENMFIGINGCSLKTIENLEIVRGIPAERMMIETDSPYC-- 377 GGV GTA ++ K ++ +FI +N + + ++ +P ++ + +P C Sbjct: 93 GGVV---LGTAPKQGKDANLNALFIDVNSQRVDVTDRNVVILSVPRNQVAGDAGAPGCSS 149 Query: 376 -DIKNTHAG 353 ++ +THAG Sbjct: 150 IEVTSTHAG 158
>GRIP1_RAT (P97879) Glutamate receptor-interacting protein 1 (GRIP1 protein)| (AMPA receptor-interacting protein GRIP1) Length = 1112 Score = 30.0 bits (66), Expect = 5.6 Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 1/95 (1%) Frame = -1 Query: 550 GGVTHSFTGTAEEREKLLSIENMFIGINGCSLK-TIENLEIVRGIPAERMMIETDSPYCD 374 G V H TGT E +KLL+I+N I ++ CS++ ++ L+ + ++ I D D Sbjct: 607 GSVAHR-TGTLELGDKLLAIDN--IRLDSCSMEDAVQILQQCEDL--VKLKIRKDEDNSD 661 Query: 373 IKNTHAGIQFVKSIWPSKKKEKYEPGITVKGRNEP 269 + + I + + K+ GIT+ G EP Sbjct: 662 EQESSGAIIYTVEL----KRYGGPLGITISGTEEP 692
>GRIP1_MOUSE (Q925T6) Glutamate receptor-interacting protein 1 (GRIP1 protein)| Length = 1127 Score = 30.0 bits (66), Expect = 5.6 Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 1/95 (1%) Frame = -1 Query: 550 GGVTHSFTGTAEEREKLLSIENMFIGINGCSLK-TIENLEIVRGIPAERMMIETDSPYCD 374 G V H TGT E +KLL+I+N I ++ CS++ ++ L+ + ++ I D D Sbjct: 607 GSVAHR-TGTLELGDKLLAIDN--IRLDNCSMEDAVQILQQCEDL--VKLKIRKDEDNSD 661 Query: 373 IKNTHAGIQFVKSIWPSKKKEKYEPGITVKGRNEP 269 + + I + + K+ GIT+ G EP Sbjct: 662 EQESSGAIIYTVEL----KRYGGPLGITISGTEEP 692
>GRIP1_HUMAN (Q9Y3R0) Glutamate receptor-interacting protein 1 (GRIP1 protein)| Length = 1128 Score = 30.0 bits (66), Expect = 5.6 Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 1/95 (1%) Frame = -1 Query: 550 GGVTHSFTGTAEEREKLLSIENMFIGINGCSLK-TIENLEIVRGIPAERMMIETDSPYCD 374 G V H TGT E +KLL+I+N I ++ CS++ ++ L+ + ++ I D D Sbjct: 608 GSVAHR-TGTLELGDKLLAIDN--IRLDNCSMEDAVQILQQCEDL--VKLKIRKDEDNSD 662 Query: 373 IKNTHAGIQFVKSIWPSKKKEKYEPGITVKGRNEP 269 + + I + + K+ GIT+ G EP Sbjct: 663 EQESSGAIIYTVEL----KRYGGPLGITISGTEEP 693
>DHAQ_ACEPO (P17201) Membrane-bound aldehyde dehydrogenase| [pyrroloquinoline-quinone] precursor (EC 1.2.99.3) (ALDH) Length = 773 Score = 30.0 bits (66), Expect = 5.6 Identities = 22/62 (35%), Positives = 29/62 (46%) Frame = -1 Query: 466 GCSLKTIENLEIVRGIPAERMMIETDSPYCDIKNTHAGIQFVKSIWPSKKKEKYEPGITV 287 G S+ EN EIV G+P +R + T +P I+F+ S K EPG TV Sbjct: 683 GLSMVLFENTEIVNGMPVDR-NLNTYTPLRIADTPEMDIEFLPS--TEKPMGLGEPGTTV 739 Query: 286 KG 281 G Sbjct: 740 VG 741
>CD14_MOUSE (P10810) Monocyte differentiation antigen CD14 precursor (Myeloid| cell-specific leucine-rich glycoprotein) Length = 366 Score = 29.6 bits (65), Expect = 7.3 Identities = 17/64 (26%), Positives = 31/64 (48%) Frame = -1 Query: 478 IGINGCSLKTIENLEIVRGIPAERMMIETDSPYCDIKNTHAGIQFVKSIWPSKKKEKYEP 299 +GI+G T+ENLE+ P ++E P +I N + W ++ ++ +P Sbjct: 109 LGISGLQELTLENLEVTGTAPPP--LLEATGPDLNILNLRNVSWATRDAWLAELQQWLKP 166 Query: 298 GITV 287 G+ V Sbjct: 167 GLKV 170
>LEU2_CHRVO (Q7NUB6) 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)| (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI) Length = 471 Score = 29.6 bits (65), Expect = 7.3 Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 3/73 (4%) Frame = -1 Query: 406 MMIETDSPYCDIKNTHAGIQFVKSIWPSKKKEKYEPGITVKGRNEPCLVRQVLEVVAG-- 233 M +E D+P I+ + F+ S S+ ++ E KGR++ V+QVL VV G Sbjct: 328 MGLEADTP---IEQIPVDVVFIGSCTNSRIEDLREAAAVAKGRSKAGNVKQVL-VVPGSG 383 Query: 232 -CKGIADIEGLSK 197 K A+ EGL K Sbjct: 384 LVKAQAEAEGLDK 396
>Y081_HAEIN (P44500) Putative deoxyribonuclease HI0081 (EC 3.1.21.-)| Length = 262 Score = 29.6 bits (65), Expect = 7.3 Identities = 14/57 (24%), Positives = 32/57 (56%), Gaps = 2/57 (3%) Frame = -1 Query: 547 GVTHSFTGTAEEREKLLSIENMFIGINGCSL--KTIENLEIVRGIPAERMMIETDSP 383 GV H F+G+ ++ ++ + + IG+ G + + + + +P + +++ETDSP Sbjct: 159 GVVHGFSGSYDQAKRFVDL-GYKIGVGGTITYERANKTRQAIAKLPLDALVLETDSP 214
>TRPC_AZOBR (P26938) Indole-3-glycerol phosphate synthase (EC 4.1.1.48) (IGPS)| Length = 262 Score = 29.6 bits (65), Expect = 7.3 Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 5/51 (9%) Frame = -1 Query: 517 EEREKLLSIENMFIGINGCSLKTI-----ENLEIVRGIPAERMMIETDSPY 380 EE ++ L+++ +G+N +LKT+ E+ +PA+RM++ Y Sbjct: 175 EELDRALALKTPLLGVNNRNLKTLAVDIATTEELAAHVPADRMLVAESGLY 225
>UVRC_NITOC (Q3JAN0) UvrABC system protein C (Protein uvrC) (Excinuclease ABC| subunit C) Length = 599 Score = 29.6 bits (65), Expect = 7.3 Identities = 15/67 (22%), Positives = 33/67 (49%) Frame = -1 Query: 385 PYCDIKNTHAGIQFVKSIWPSKKKEKYEPGITVKGRNEPCLVRQVLEVVAGCKGIADIEG 206 PY +I++ ++ ++ ++P ++ E + R+ PCL Q+ A C G+ + Sbjct: 130 PYPNIRSVWQTLKLLQRVFPVRQCEDN----FYRNRSRPCLQYQIKRCTAPCVGLISKKD 185 Query: 205 LSKTLYH 185 S+ + H Sbjct: 186 YSQDIQH 192 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 85,464,625 Number of Sequences: 219361 Number of extensions: 1703823 Number of successful extensions: 4554 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 4360 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4534 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5538924943 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
