>ITA5_HUMAN (P08648) Integrin alpha-5 precursor (Fibronectin receptor alpha|
           subunit) (Integrin alpha-F) (VLA-5) (CD49e antigen)
           [Contains: Integrin alpha-5 heavy chain; Integrin
           alpha-5 light chain]
          Length = 1049

 Score = 33.1 bits (74), Expect = 0.83
 Identities = 25/80 (31%), Positives = 33/80 (41%)
 Frame = +3

Query: 69  PLGILYLPTCVGFGYRYPFVEGRSSFSWEYGIGYILQRRSAWYEPRGEAIASPRGSYFSA 248
           P+G  YL T   F     +   RS FSW  G GY     SA +   G  +    GSYF  
Sbjct: 172 PVGTCYLSTD-NFTRILEYAPCRSDFSWAAGQGYCQGGFSAEFTKTGRVVLGGPGSYFWQ 230

Query: 249 AALGTRTSARGIFSTPSYPE 308
             + + T  +   +   YPE
Sbjct: 231 GQILSATQEQ--IAESYYPE 248

>DMBT1_PIG (Q4A3R3) Deleted in malignant brain tumors 1 protein precursor|
          Length = 1204

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 18/46 (39%), Positives = 21/46 (45%)
 Frame = +3

Query: 168 YILQRRSAWYEPRGEAIASPRGSYFSAAALGTRTSARGIFSTPSYP 305
           Y       W+ P     ASP     S+   G  TSA G FS+PSYP
Sbjct: 494 YTTTPSQTWWHPTTTTAASP-----SSPCGGFLTSASGTFSSPSYP 534

>CP74A_ARATH (Q96242) Cytochrome P450 74A, chloroplast precursor (EC 4.2.1.92)|
           (Allene oxide synthase) (Hydroperoxide dehydrase)
          Length = 518

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
 Frame = +1

Query: 106 SGTGTLLLKVVRAFPGSMASVTYFSAVAPGMSLVEKQLL--VHGAHTSALQRLVLGPRLE 279
           S  GT    + RAF G+  + T   A APG  L+ K +L  +H   +  L R++  P + 
Sbjct: 212 SSDGTAFNFLARAFYGTNPADTKLKADAPG--LITKWVLFNLHPLLSIGLPRVIEEPLIH 269

Query: 280 AFSLPLLTLK 309
            FSLP   +K
Sbjct: 270 TFSLPPALVK 279

>ZN580_MOUSE (Q9DB38) Zinc finger protein 580|
          Length = 172

 Score = 30.4 bits (67), Expect = 5.4
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -2

Query: 512 IQCPENPRFPPQGSSTEGESGPK 444
           +Q  E PR PPQ  +T GE GP+
Sbjct: 67  VQLEEEPRGPPQREATPGEPGPR 89

>SYP2L_HUMAN (Q9H987) Synaptopodin 2-like protein|
          Length = 977

 Score = 30.4 bits (67), Expect = 5.4
 Identities = 22/67 (32%), Positives = 29/67 (43%)
 Frame = -3

Query: 298 EGVEKMPRAEVRVPSAAALKYEPRGLAIASPRGSYQALRR*SM*PMPYSQEKLERPSTKG 119
           EG++  PRA+   P AA L   P    +ASPR         +  P P    +  RP T G
Sbjct: 417 EGLQSPPRAQSAPPEAAVLPPSPLPAPVASPRPFQPGGGAPT--PAPSIFNRSARPFTPG 474

Query: 118 YLYPKPT 98
               +PT
Sbjct: 475 LQGQRPT 481

>COX1_CHLRE (P08681) Cytochrome c oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c|
           oxidase polypeptide I)
          Length = 505

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 9/84 (10%)
 Frame = +1

Query: 79  FSTYPPVSVSGTGTLL-LKVVRAFPGSMAS--------VTYFSAVAPGMSLVEKQLLVHG 231
           ++ YPP+SV  +GT + L ++      ++S        VT     APGM L+   L V  
Sbjct: 125 WTAYPPLSVQHSGTSVDLAILSLHLNGLSSILGAVNMLVTVAGLRAPGMKLLHMPLFVWA 184

Query: 232 AHTSALQRLVLGPRLEAFSLPLLT 303
              +A+  ++  P L A  + LLT
Sbjct: 185 IALTAVLVILAVPVLAAALVMLLT 208


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 103,662,156
Number of Sequences: 219361
Number of extensions: 2357036
Number of successful extensions: 6013
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6008
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 6912958834
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)