ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd11l03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL117259.6|CNS01DRJ Human chromosome 14 DNA sequence BAC R-3... 42 0.73
2emb|AL132708.3|CNS01DTA Human chromosome 14 DNA sequence BAC R-3... 42 0.73
3gb|K02212.1|HUMA1ATP Human alpha-1-antitrypsin gene (S variant),... 42 0.73
4emb|BX928749.12| Zebrafish DNA sequence from clone CH211-201A8 i... 40 2.9

>emb|AL117259.6|CNS01DRJ Human chromosome 14 DNA sequence BAC R-304M6 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 193301

 Score = 42.1 bits (21), Expect = 0.73
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 128   ccctggggatgttacaggctg 148
             |||||||||||||||||||||
Sbjct: 10633 ccctggggatgttacaggctg 10653



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>emb|AL132708.3|CNS01DTA Human chromosome 14 DNA sequence BAC R-349I1 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 147505

 Score = 42.1 bits (21), Expect = 0.73
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 128    ccctggggatgttacaggctg 148
              |||||||||||||||||||||
Sbjct: 136724 ccctggggatgttacaggctg 136744



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>gb|K02212.1|HUMA1ATP Human alpha-1-antitrypsin gene (S variant), complete cds
          Length = 12222

 Score = 42.1 bits (21), Expect = 0.73
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 128   ccctggggatgttacaggctg 148
             |||||||||||||||||||||
Sbjct: 10621 ccctggggatgttacaggctg 10641



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>emb|BX928749.12| Zebrafish DNA sequence from clone CH211-201A8 in linkage group 2,
             complete sequence
          Length = 215263

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 85    agacgctcagagcagaagac 104
             ||||||||||||||||||||
Sbjct: 16029 agacgctcagagcagaagac 16048


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 899,896
Number of Sequences: 3902068
Number of extensions: 899896
Number of successful extensions: 50113
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 50109
Number of HSP's gapped (non-prelim): 4
length of query: 227
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 205
effective length of database: 17,147,199,772
effective search space: 3515175953260
effective search space used: 3515175953260
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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