ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd11k19
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK111642.1| Oryza sativa (japonica cultivar-group) cDNA clon... 311 1e-81
2gb|AC137610.2| Oryza sativa (japonica cultivar-group) chromosome... 210 4e-51
3dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 210 4e-51
4ref|NM_106630.2| Arabidopsis thaliana TED3 (REVERSAL OF THE DET ... 58 3e-05
5ref|NM_202454.1| Arabidopsis thaliana TED3 (REVERSAL OF THE DET ... 58 3e-05
6gb|AY096373.1| Arabidopsis thaliana unknown protein (At1g79810) ... 58 3e-05
7gb|AY064063.1| Arabidopsis thaliana unknown protein (At1g79810) ... 58 3e-05
8emb|BX815670.1|CNS0ACDK Arabidopsis thaliana Full-length cDNA Co... 58 3e-05
9emb|BX814176.1|CNS0ACA6 Arabidopsis thaliana Full-length cDNA Co... 58 3e-05
10emb|BX816086.1|CNS0ABU5 Arabidopsis thaliana Full-length cDNA Co... 58 3e-05
11emb|BX815600.1|CNS0ABD1 Arabidopsis thaliana Full-length cDNA Co... 58 3e-05
12emb|BX814952.1|CNS0ABDG Arabidopsis thaliana Full-length cDNA Co... 58 3e-05
13gb|AY084823.1| Arabidopsis thaliana clone 118765 mRNA, complete ... 58 3e-05
14gb|AC011717.6|AC011717 Arabidopsis thaliana chromosome 1 BAC F19... 48 0.031
15gb|AC010793.3|AC010793 Genomic sequence for Arabidopsis thaliana... 48 0.031
16gb|AC144721.18| Medicago truncatula clone mth2-11o23, complete s... 44 0.49
17gb|AC005539.1| Homo sapiens BAC clone RP11-335J18 from 2, comple... 44 0.49
18dbj|AP003397.2| Homo sapiens genomic DNA, chromosome 11q clone:R... 44 0.49
19ref|NM_100554.3| Arabidopsis thaliana protein binding / ubiquiti... 42 1.9
20ref|NM_202046.1| Arabidopsis thaliana protein binding / zinc ion... 42 1.9
21emb|AL844518.5| Zebrafish DNA sequence from clone DKEY-83D9 in l... 42 1.9
22emb|BX927321.6| Mouse DNA sequence from clone RP23-144M4 on chro... 42 1.9
23emb|BX814393.1|CNS0ADPH Arabidopsis thaliana Full-length cDNA Co... 42 1.9
24emb|BX815334.1|CNS0ACTQ Arabidopsis thaliana Full-length cDNA Co... 42 1.9
25emb|BX815952.1|CNS0AAPA Arabidopsis thaliana Full-length cDNA Co... 42 1.9
26gb|AC149717.2| Bos taurus BAC CH240-194N8 (Children's Hospital ... 40 7.7
27gb|AC149683.2| Bos taurus BAC CH240-493H15 (Children's Hospital... 40 7.7
28emb|AL713999.28| Human DNA sequence from clone RP11-263K19 on ch... 40 7.7
29emb|AL158193.13| Human DNA sequence from clone RP11-400N12 on ch... 40 7.7
30emb|AL137881.12| Human DNA sequence from clone RP11-40A8 on chro... 40 7.7
31gb|AC117513.4| Homo sapiens 3 BAC RP11-451B8 (Roswell Park Cance... 40 7.7
32gb|AC108749.11| Homo sapiens 3 BAC RP11-288B15 (Roswell Park Can... 40 7.7
33gb|AC092079.2| Homo sapiens chromosome 15 clone RP11-568G20 map ... 40 7.7
34gb|AY123734.1| Listeria seeligeri strain ATCC 35967 Cpn60 (cpn60... 40 7.7
35gb|AC092138.4| Homo sapiens chromosome 16 clone RP11-351A20, com... 40 7.7
36gb|AC009062.8| Homo sapiens chromosome 16 clone RP11-298C15, com... 40 7.7
37gb|AC011001.2|AC011001 Arabidopsis thaliana chromosome I BAC F4H... 40 7.7
38gb|AY922356.1| Listeria seeligeri strain ATCC 35967 60 kDa chape... 40 7.7
39gb|AF023268.1|AF023268 Homo sapiens clk2 kinase (CLK2), propin1,... 40 7.7
40emb|AL645477.8| Mouse DNA sequence from clone RP23-155L18 on chr... 40 7.7 
>dbj|AK111642.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013121E16, full
            insert sequence
          Length = 1526

 Score =  311 bits (157), Expect = 1e-81
 Identities = 277/317 (87%)
 Strand = Plus / Minus

                                                                        
Query: 249  aaactaacttgatccatgtcgctgaatcgcaacgacaacctcattacagcgtgcacatct 308
            ||||||||||||||| ||||  ||||| ||||| |||| ||||||||| | |||||||||
Sbjct: 1319 aaactaacttgatccttgtctttgaattgcaacaacaatctcattacaccttgcacatct 1260

                                                                        
Query: 309  gtaagaacttgtagctgcagaccgcgttcgtaggcaataataacaatacctgtgttggca 368
             || ||  |||| |||||| | || ||| | ||||| ||||| |||||||||||||| ||
Sbjct: 1259 atacgagtttgtggctgcacaacgtgtttgcaggcagtaatagcaatacctgtgttgaca 1200

                                                                        
Query: 369  tgggagagctacaaagggaatgctaggactagagacacatataggacagtttgcttcatc 428
            |||||||||| | ||||||||||||||||| |||  ||||||||| |||| |||||||||
Sbjct: 1199 tgggagagcttcgaagggaatgctaggactggagcgacatatagggcagtctgcttcatc 1140

                                                                        
Query: 429  accagaagaacttgctgatttatccttagagaaaggaaggaggaacttctttactgagga 488
             ||||||||||||||||||||||| || |||||||| || || |||||||||||||||||
Sbjct: 1139 gccagaagaacttgctgatttatctttggagaaaggtagaagaaacttctttactgagga 1080

                                                                        
Query: 489  tgaatttaagaggggtagaagcaaaagcaacatttccgaaaactcattccagaccagctg 548
            ||| ||||||||||| |||||||||||||||||||||||||| |||||||| ||||| ||
Sbjct: 1079 tgagtttaagaggggaagaagcaaaagcaacatttccgaaaattcattccaaaccagttg 1020

                             
Query: 549  ccgattcatgtactcaa 565
            ||| |||||||||||||
Sbjct: 1019 ccggttcatgtactcaa 1003
to top
>gb|AC137610.2| Oryza sativa (japonica cultivar-group) chromosome 5 BAC clone
              OSJNBa0018H09, complete sequence
          Length = 155329

 Score =  210 bits (106), Expect = 4e-51
 Identities = 154/170 (90%)
 Strand = Plus / Plus

                                                                          
Query: 356    acctgtgttggcatgggagagctacaaagggaatgctaggactagagacacatataggac 415
              |||||||||| |||||||||||| | ||||||||||||||||| |||  ||||||||| |
Sbjct: 123060 acctgtgttgacatgggagagcttcgaagggaatgctaggactggagcgacatatagggc 123119

                                                                          
Query: 416    agtttgcttcatcaccagaagaacttgctgatttatccttagagaaaggaaggaggaact 475
              ||| ||||||||| ||||||||||||||||||||||| || |||||||| || || ||||
Sbjct: 123120 agtctgcttcatcgccagaagaacttgctgatttatctttggagaaaggtagaagaaact 123179

                                                                
Query: 476    tctttactgaggatgaatttaagaggggtagaagcaaaagcaacatttcc 525
              |||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct: 123180 tctttactgaggatgagtttaagaggggaagaagcaaaagcaacatttcc 123229



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 42/44 (95%)
 Strand = Plus / Plus

                                                         
Query: 355   tacctgtgttggcatgggagagctacaaagggaatgctaggact 398
             ||||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 59900 tacctgtgttgacatgggagagctactaagggaatgctaggact 59943



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 92/112 (82%)
 Strand = Plus / Plus

                                                                          
Query: 249    aaactaacttgatccatgtcgctgaatcgcaacgacaacctcattacagcgtgcacatct 308
              ||||||||||||||| ||||  ||||| ||||| |||| ||||||||| | |||||||||
Sbjct: 122602 aaactaacttgatccttgtctttgaattgcaacaacaatctcattacaccttgcacatct 122661

                                                                  
Query: 309    gtaagaacttgtagctgcagaccgcgttcgtaggcaataataacaatacctg 360
               || ||  |||| |||||| | || ||| | ||||| ||||| |||||||||
Sbjct: 122662 atacgagtttgtggctgcacaacgtgtttgcaggcagtaatagcaatacctg 122713



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 71/85 (83%)
 Strand = Plus / Plus

                                                                         
Query: 441   tgctgatttatccttagagaaaggaaggaggaacttctttactgaggatgaatttaagag 500
             ||||||| |||| || || ||||| || || |||||||| ||| |||| || ||||||||
Sbjct: 60001 tgctgatctatctttggacaaaggtagaagaaacttcttcactaaggacgagtttaagag 60060

                                      
Query: 501   gggtagaagcaaaagcaacatttcc 525
              || ||||||||| |||||||||||
Sbjct: 60061 cggaagaagcaaaggcaacatttcc 60085



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                        
Query: 524    ccgaaaactcattccagaccagctgccgattcatgtactcaa 565
              ||||||| |||||||| ||||| ||||| |||||||||||||
Sbjct: 125101 ccgaaaattcattccaaaccagttgccggttcatgtactcaa 125142
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  210 bits (106), Expect = 4e-51
 Identities = 154/170 (90%)
 Strand = Plus / Plus

                                                                            
Query: 356      acctgtgttggcatgggagagctacaaagggaatgctaggactagagacacatataggac 415
                |||||||||| |||||||||||| | ||||||||||||||||| |||  ||||||||| |
Sbjct: 11220806 acctgtgttgacatgggagagcttcgaagggaatgctaggactggagcgacatatagggc 11220865

                                                                            
Query: 416      agtttgcttcatcaccagaagaacttgctgatttatccttagagaaaggaaggaggaact 475
                ||| ||||||||| ||||||||||||||||||||||| || |||||||| || || ||||
Sbjct: 11220866 agtctgcttcatcgccagaagaacttgctgatttatctttggagaaaggtagaagaaact 11220925

                                                                  
Query: 476      tctttactgaggatgaatttaagaggggtagaagcaaaagcaacatttcc 525
                |||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct: 11220926 tctttactgaggatgagtttaagaggggaagaagcaaaagcaacatttcc 11220975



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 42/44 (95%)
 Strand = Plus / Plus

                                                            
Query: 355      tacctgtgttggcatgggagagctacaaagggaatgctaggact 398
                ||||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 11157646 tacctgtgttgacatgggagagctactaagggaatgctaggact 11157689



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 92/112 (82%)
 Strand = Plus / Plus

                                                                            
Query: 249      aaactaacttgatccatgtcgctgaatcgcaacgacaacctcattacagcgtgcacatct 308
                ||||||||||||||| ||||  ||||| ||||| |||| ||||||||| | |||||||||
Sbjct: 11220348 aaactaacttgatccttgtctttgaattgcaacaacaatctcattacaccttgcacatct 11220407

                                                                    
Query: 309      gtaagaacttgtagctgcagaccgcgttcgtaggcaataataacaatacctg 360
                 || ||  |||| |||||| | || ||| | ||||| ||||| |||||||||
Sbjct: 11220408 atacgagtttgtggctgcacaacgtgtttgcaggcagtaatagcaatacctg 11220459



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 71/85 (83%)
 Strand = Plus / Plus

                                                                            
Query: 441      tgctgatttatccttagagaaaggaaggaggaacttctttactgaggatgaatttaagag 500
                ||||||| |||| || || ||||| || || |||||||| ||| |||| || ||||||||
Sbjct: 11157747 tgctgatctatctttggacaaaggtagaagaaacttcttcactaaggacgagtttaagag 11157806

                                         
Query: 501      gggtagaagcaaaagcaacatttcc 525
                 || ||||||||| |||||||||||
Sbjct: 11157807 cggaagaagcaaaggcaacatttcc 11157831



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                          
Query: 524      ccgaaaactcattccagaccagctgccgattcatgtactcaa 565
                ||||||| |||||||| ||||| ||||| |||||||||||||
Sbjct: 11222847 ccgaaaattcattccaaaccagttgccggttcatgtactcaa 11222888
to top
>ref|NM_106630.2| Arabidopsis thaliana TED3 (REVERSAL OF THE DET PHENOTYPE); protein
           binding / ubiquitin-protein ligase/ zinc ion binding
           AT1G79810 (TED3) transcript variant AT1G79810.1 mRNA,
           complete cds
          Length = 1808

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 41/45 (91%)
 Strand = Plus / Minus

                                                        
Query: 519 catttccgaaaactcattccagaccagctgccgattcatgtactc 563
           |||||||||||| |||||||| || || |||||||||||||||||
Sbjct: 926 catttccgaaaattcattccacacaagttgccgattcatgtactc 882
to top
>ref|NM_202454.1| Arabidopsis thaliana TED3 (REVERSAL OF THE DET PHENOTYPE); protein
           binding / ubiquitin-protein ligase/ zinc ion binding
           AT1G79810 (TED3) transcript variant AT1G79810.2 mRNA,
           complete cds
          Length = 1812

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 41/45 (91%)
 Strand = Plus / Minus

                                                        
Query: 519 catttccgaaaactcattccagaccagctgccgattcatgtactc 563
           |||||||||||| |||||||| || || |||||||||||||||||
Sbjct: 930 catttccgaaaattcattccacacaagttgccgattcatgtactc 886
to top
>gb|AY096373.1| Arabidopsis thaliana unknown protein (At1g79810) mRNA, complete cds
          Length = 1033

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 41/45 (91%)
 Strand = Plus / Minus

                                                        
Query: 519 catttccgaaaactcattccagaccagctgccgattcatgtactc 563
           |||||||||||| |||||||| || || |||||||||||||||||
Sbjct: 726 catttccgaaaattcattccacacaagttgccgattcatgtactc 682
to top
>gb|AY064063.1| Arabidopsis thaliana unknown protein (At1g79810) mRNA, complete cds
          Length = 1451

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 41/45 (91%)
 Strand = Plus / Minus

                                                        
Query: 519 catttccgaaaactcattccagaccagctgccgattcatgtactc 563
           |||||||||||| |||||||| || || |||||||||||||||||
Sbjct: 927 catttccgaaaattcattccacacaagttgccgattcatgtactc 883
to top
>emb|BX815670.1|CNS0ACDK Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS82ZA03 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1366

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 41/45 (91%)
 Strand = Plus / Minus

                                                        
Query: 519 catttccgaaaactcattccagaccagctgccgattcatgtactc 563
           |||||||||||| |||||||| || || |||||||||||||||||
Sbjct: 841 catttccgaaaattcattccacacaagttgccgattcatgtactc 797
to top
>emb|BX814176.1|CNS0ACA6 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB5ZE07 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1432

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 41/45 (91%)
 Strand = Plus / Minus

                                                        
Query: 519 catttccgaaaactcattccagaccagctgccgattcatgtactc 563
           |||||||||||| |||||||| || || |||||||||||||||||
Sbjct: 894 catttccgaaaattcattccacacaagttgccgattcatgtactc 850
to top
>emb|BX816086.1|CNS0ABU5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH27ZC02 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1424

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 41/45 (91%)
 Strand = Plus / Minus

                                                        
Query: 519 catttccgaaaactcattccagaccagctgccgattcatgtactc 563
           |||||||||||| |||||||| || || |||||||||||||||||
Sbjct: 887 catttccgaaaattcattccacacaagttgccgattcatgtactc 843
to top
>emb|BX815600.1|CNS0ABD1 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS76ZB03 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1460

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 41/45 (91%)
 Strand = Plus / Minus

                                                        
Query: 519 catttccgaaaactcattccagaccagctgccgattcatgtactc 563
           |||||||||||| |||||||| || || |||||||||||||||||
Sbjct: 906 catttccgaaaattcattccacacaagttgccgattcatgtactc 862
to top
>emb|BX814952.1|CNS0ABDG Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS20ZB06 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1320

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 41/45 (91%)
 Strand = Plus / Minus

                                                        
Query: 519 catttccgaaaactcattccagaccagctgccgattcatgtactc 563
           |||||||||||| |||||||| || || |||||||||||||||||
Sbjct: 891 catttccgaaaattcattccacacaagttgccgattcatgtactc 847
to top
>gb|AY084823.1| Arabidopsis thaliana clone 118765 mRNA, complete sequence
          Length = 1497

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 41/45 (91%)
 Strand = Plus / Minus

                                                        
Query: 519 catttccgaaaactcattccagaccagctgccgattcatgtactc 563
           |||||||||||| |||||||| || || |||||||||||||||||
Sbjct: 922 catttccgaaaattcattccacacaagttgccgattcatgtactc 878
to top
>gb|AC011717.6|AC011717 Arabidopsis thaliana chromosome 1 BAC F19K16 genomic sequence, complete
             sequence
          Length = 111301

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                     
Query: 524   ccgaaaactcattccagaccagctgccgattcatgtactc 563
             ||||||| |||||||| || || |||||||||||||||||
Sbjct: 82980 ccgaaaattcattccacacaagttgccgattcatgtactc 83019
to top
>gb|AC010793.3|AC010793 Genomic sequence for Arabidopsis thaliana BAC F20B17 from chromosome I,
             complete sequence
          Length = 90149

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                     
Query: 524   ccgaaaactcattccagaccagctgccgattcatgtactc 563
             ||||||| |||||||| || || |||||||||||||||||
Sbjct: 83849 ccgaaaattcattccacacaagttgccgattcatgtactc 83810
to top
>gb|AC144721.18| Medicago truncatula clone mth2-11o23, complete sequence
          Length = 135959

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 73/90 (81%)
 Strand = Plus / Plus

                                                                         
Query: 436   gaacttgctgatttatccttagagaaaggaaggaggaacttctttactgaggatgaattt 495
             ||||||| ||||||||||||||| |||||  ||||||  || || || || |||||||||
Sbjct: 60602 gaacttgatgatttatccttagaaaaaggccggaggagatttttcaccgatgatgaattt 60661

                                           
Query: 496   aagaggggtagaagcaaaagcaacatttcc 525
             |  || || |||||||| |  |||||||||
Sbjct: 60662 agaagaggaagaagcaacaataacatttcc 60691
to top
>gb|AC005539.1| Homo sapiens BAC clone RP11-335J18 from 2, complete sequence
          Length = 209613

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                                
Query: 456    agagaaaggaaggaggaacttctttactgaggat 489
              |||||||  |||||| ||||||||||||||||||
Sbjct: 145075 agagaaacaaaggagaaacttctttactgaggat 145108
to top
>dbj|AP003397.2| Homo sapiens genomic DNA, chromosome 11q clone:RP11-1007G5, complete
              sequences
          Length = 184643

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 453    cttagagaaaggaaggaggaac 474
              ||||||||||||||||||||||
Sbjct: 108334 cttagagaaaggaaggaggaac 108355
to top
>ref|NM_100554.3| Arabidopsis thaliana protein binding / ubiquitin-protein ligase/ zinc
            ion binding AT1G06770 transcript variant AT1G06770.1
            mRNA, complete cds
          Length = 1789

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 462  aggaaggaggaacttctttac 482
            |||||||||||||||||||||
Sbjct: 1174 aggaaggaggaacttctttac 1194
to top
>ref|NM_202046.1| Arabidopsis thaliana protein binding / zinc ion binding AT1G06770
            transcript variant AT1G06770.2 mRNA, complete cds
          Length = 2204

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 462  aggaaggaggaacttctttac 482
            |||||||||||||||||||||
Sbjct: 1589 aggaaggaggaacttctttac 1609
to top
>emb|AL844518.5| Zebrafish DNA sequence from clone DKEY-83D9 in linkage group 21 Contains
              novel genes similar to vertebrate AQP3 (aquaporin 3),human
              and mouse VPS29 (vacuolar protein sorting 29 (yeast)), to
              human MGC14560 (x 0004 protein), human and mouse ARPC3
              (actin related protein 2/3 complex, subunit 3, 21kDa),
              human UBE2G1 (ubiquitin-conjugating enzyme E2G 1 (UBC7
              homolog, C. elegans)), vertebrate ATP2A2 (ATPase, Ca++
              transporting, cardiac muscle, slow twitch 2), human BCR
              (breakpoint cluster region) and three CpG islands, complete
              sequence
          Length = 242235

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 281    cgacaacctcattacagcgtg 301
              |||||||||||||||||||||
Sbjct: 202075 cgacaacctcattacagcgtg 202055
to top
>emb|BX927321.6| Mouse DNA sequence from clone RP23-144M4 on chromosome X, complete
             sequence
          Length = 233474

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 438   acttgctgatttatccttaga 458
             |||||||||||||||||||||
Sbjct: 23857 acttgctgatttatccttaga 23877
to top
>emb|BX814393.1|CNS0ADPH Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB71ZD03 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1682

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 462  aggaaggaggaacttctttac 482
            |||||||||||||||||||||
Sbjct: 1118 aggaaggaggaacttctttac 1138
to top
>emb|BX815334.1|CNS0ACTQ Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS53ZA08 of Adult vegetative tissue of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1783

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 462  aggaaggaggaacttctttac 482
            |||||||||||||||||||||
Sbjct: 1176 aggaaggaggaacttctttac 1196
to top
>emb|BX815952.1|CNS0AAPA Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH19ZG02 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1549

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 462  aggaaggaggaacttctttac 482
            |||||||||||||||||||||
Sbjct: 1056 aggaaggaggaacttctttac 1076
to top
>gb|AC149717.2| Bos taurus  BAC CH240-194N8 (Children's Hospital Oakland Research
              Institute Bovine BAC Library (male)) complete sequence
          Length = 140707

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 456    agagaaaggaaggaggaacttctt 479
              |||||||||||||| |||||||||
Sbjct: 122780 agagaaaggaaggaagaacttctt 122757
to top
>gb|AC149683.2| Bos taurus  BAC CH240-493H15 (Children's Hospital Oakland Research
              Institute Bovine BAC Library (male)) complete sequence
          Length = 176832

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 456    agagaaaggaaggaggaacttctt 479
              |||||||||||||| |||||||||
Sbjct: 158589 agagaaaggaaggaagaacttctt 158612
to top
>emb|AL713999.28| Human DNA sequence from clone RP11-263K19 on chromosome 1 Contains the
             3' end of the TRIM46 gene for tripartite motif-containing
             46, the MUC1 gene for mucin 1 (transmembrane), the THBS3
             gene for thrombospondin 3, two novel genes, the MTX1 gene
             for metaxin 1, the gene for a novel protein similar to
             glucosidase (beta; acid (includes glucosylceramidase))
             (GBA), a metaxin 1 (MTX1) pseudogene, the GBA gene for
             glucosidase (beta; acid (includes glucosylceramidase)),
             the C1orf2 gene for chromosome 1 open reading frame 2, the
             SCAMP3 gene for secretory carrier membrane protein 3, the
             CLK2 gene for CDC-like kinase 2, the HCN3 gene for
             hyperpolarization activated cyclic nucleotide-gated
             potassium channel 3, the PKLR gene for pyruvate kinase
             (liver and RBC) and three CpG islands, complete sequence
          Length = 133525

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 294   acagcgtgcacatctgtaag 313
             ||||||||||||||||||||
Sbjct: 93265 acagcgtgcacatctgtaag 93284
to top
>emb|AL158193.13| Human DNA sequence from clone RP11-400N12 on chromosome 13 Contains the
              3' end of the UBL3 gene for ubiquitin-like 3 and a CpG
              island, complete sequence
          Length = 172896

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 58     cagacttctctatagcttct 77
              ||||||||||||||||||||
Sbjct: 107827 cagacttctctatagcttct 107846
to top
>emb|AL137881.12| Human DNA sequence from clone RP11-40A8 on chromosome 13 Contains a
             novel gene, the 3' end of the GUCY1B2 gene for guanylate
             cyclase 1 soluble beta 2 and  a CpG island, complete
             sequence
          Length = 143324

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 509   gcaaaagcaacatttccgaaaact 532
             |||||||||||||||| |||||||
Sbjct: 46640 gcaaaagcaacatttctgaaaact 46617
to top
>gb|AC117513.4| Homo sapiens 3 BAC RP11-451B8 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 166960

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 12    ctcaaagaacatatttttgt 31
             ||||||||||||||||||||
Sbjct: 57303 ctcaaagaacatatttttgt 57322
to top
>gb|AC108749.11| Homo sapiens 3 BAC RP11-288B15 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 170796

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 12    ctcaaagaacatatttttgt 31
             ||||||||||||||||||||
Sbjct: 42437 ctcaaagaacatatttttgt 42418
to top
>gb|AC092079.2| Homo sapiens chromosome 15 clone RP11-568G20 map 15q22, complete
             sequence
          Length = 195554

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 108   atatccatacaccaatttgt 127
             ||||||||||||||||||||
Sbjct: 65867 atatccatacaccaatttgt 65886
to top
>gb|AY123734.1| Listeria seeligeri strain ATCC 35967 Cpn60 (cpn60) gene, partial
           cds
          Length = 552

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 422 cttcatcaccagaagaacttgctg 445
           ||||||||||||||||| ||||||
Sbjct: 193 cttcatcaccagaagaaattgctg 170
to top
>gb|AC092138.4| Homo sapiens chromosome 16 clone RP11-351A20, complete sequence
          Length = 189505

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 340   aggcaataataacaatacct 359
             ||||||||||||||||||||
Sbjct: 20101 aggcaataataacaatacct 20082
to top
>gb|AC009062.8| Homo sapiens chromosome 16 clone RP11-298C15, complete sequence
          Length = 207345

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 340    aggcaataataacaatacct 359
              ||||||||||||||||||||
Sbjct: 188029 aggcaataataacaatacct 188010
to top
>gb|AC011001.2|AC011001 Arabidopsis thaliana chromosome I BAC F4H5 genomic sequence, complete
             sequence
          Length = 91608

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 463   ggaaggaggaacttctttac 482
             ||||||||||||||||||||
Sbjct: 55329 ggaaggaggaacttctttac 55348
to top
>gb|AY922356.1| Listeria seeligeri strain ATCC 35967 60 kDa chaperonin (cpn60)
           gene, partial cds
          Length = 552

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 422 cttcatcaccagaagaacttgctg 445
           ||||||||||||||||| ||||||
Sbjct: 193 cttcatcaccagaagaaattgctg 170
to top
>gb|AF023268.1|AF023268 Homo sapiens clk2 kinase (CLK2), propin1, cote1, glucocerebrosidase
            (GBA), and metaxin genes, complete cds; metaxin
            pseudogene and glucocerebrosidase pseudogene; and
            thrombospondin3 (THBS3) gene, partial cds
          Length = 75270

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 294  acagcgtgcacatctgtaag 313
            ||||||||||||||||||||
Sbjct: 8370 acagcgtgcacatctgtaag 8351
to top
>emb|AL645477.8| Mouse DNA sequence from clone RP23-155L18 on chromosome X, complete
             sequence
          Length = 189131

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 53    tctcacagacttctctatag 72
             ||||||||||||||||||||
Sbjct: 69328 tctcacagacttctctatag 69309


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,936,700
Number of Sequences: 3902068
Number of extensions: 5936700
Number of successful extensions: 128677
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 128581
Number of HSP's gapped (non-prelim): 96
length of query: 565
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 542
effective length of database: 17,143,297,704
effective search space: 9291667355568
effective search space used: 9291667355568
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top