>FLGH_BUCBP (Q89AH6) Flagellar L-ring protein precursor (Basal body L-ring|
           protein)
          Length = 244

 Score = 31.6 bits (70), Expect = 1.5
 Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +1

Query: 55  LLHMYILRNFVSERKNIATNKKQKRSKC-SLPILALSTETN 174
           L+  +IL N  S  KNI  NKKQK+ K  +LPI   S ET+
Sbjct: 15  LILFFILLNGCSIDKNIILNKKQKQHKIFNLPITHTSKETH 55

>SECY_BUCBP (Q89A85) Preprotein translocase secY subunit|
          Length = 441

 Score = 29.6 bits (65), Expect = 5.8
 Identities = 13/33 (39%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
 Frame = -1

Query: 185 VPLTFVS-VDKASIGKLHLLRFCFLLVAIFFLS 90
           +P +F++ V+K   G LH+L FCF+ + IF ++
Sbjct: 200 LPSSFLNTVEKVRQGSLHVLLFCFIGIVIFLVT 232

>KPTA1_ARCFU (O29841) Probable RNA 2'-phosphotransferase 1 (EC 2.7.-.-)|
          Length = 216

 Score = 29.6 bits (65), Expect = 5.8
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +1

Query: 376 HLPHNRGLNTFSKLHFNLRSKRDIVCQRFEWINRWI 483
           H P   GLN       NL S   +V +R++W N W+
Sbjct: 46  HFPDKFGLNMDENGWVNLESLARVVKRRYKWANIWL 81

>CHD9_HUMAN (Q3L8U1) Chromodomain-helicase-DNA-binding protein 9 (EC 3.6.1.-)|
            (ATP-dependent helicase CHD9) (CHD-9) (Chromatin-related
            mesenchymal modulator) (CReMM) (Chromatin remodeling
            factor CHROM1) (Peroxisomal proliferator-activated
            receptor A-inter
          Length = 2897

 Score = 29.3 bits (64), Expect = 7.6
 Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
 Frame = +2

Query: 242  KIDQSCDVAEYS--KRSRLDGVDWKMTRSLLVSWYINDHCIAISESFICLTTEA*TRFPS 415
            KIDQS D    +  +  +L+G++W     LL +WY   +CI   E  +  T ++ T    
Sbjct: 847  KIDQSRDYKNGNQLREYQLEGLNW-----LLFNWYNRRNCILADEMGLGKTIQSITFLYE 901

Query: 416  CTSTSVAKEILFASDLS 466
               T +    L  + LS
Sbjct: 902  ILLTGIRGPFLIIAPLS 918


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,089,687
Number of Sequences: 219361
Number of extensions: 1616731
Number of successful extensions: 3854
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3854
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4373119116
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)