ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd11d08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT017217.1| Zea mays clone EL01N0372E04.c mRNA sequence 212 9e-52
2gb|AY105451.1| Zea mays PCO122767 mRNA sequence 212 9e-52
3dbj|AK104375.1| Oryza sativa (japonica cultivar-group) cDNA clon... 147 4e-32
4dbj|AK099815.1| Oryza sativa (japonica cultivar-group) cDNA clon... 147 4e-32
5dbj|AK061385.1| Oryza sativa (japonica cultivar-group) cDNA clon... 147 4e-32
6dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 98 4e-17
7dbj|AP003526.3| Oryza sativa (japonica cultivar-group) genomic D... 98 4e-17
8gb|AC139211.13| Mus musculus chromosome 6, clone RP23-302O24, co... 46 0.12
9gb|AC158683.2| Mus musculus 6 BAC RP23-328P16 (Roswell Park Canc... 46 0.12
10emb|AL354738.13| Human DNA sequence from clone RP11-628O6 on chr... 42 1.9
11gb|AY279311.1| Malus x domestica ATP-dependent Clp protease prot... 42 1.9
12emb|CR376850.6| Zebrafish DNA sequence from clone DKEY-246K9 in ... 42 1.9
13ref|XM_479327.1| Oryza sativa (japonica cultivar-group), mRNA 40 7.5
14gb|AC161286.2| Pan troglodytes BAC clone CH251-332L6 from chromo... 40 7.5
15gb|AC161005.4| Pan troglodytes BAC clone CH251-668M6 from chromo... 40 7.5
16gb|AC125160.3| Mus musculus BAC clone RP24-409P4 from chromosome... 40 7.5
17gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome 40 7.5
18gb|AC161386.4| Pan troglodytes BAC clone CH251-497P4 from chromo... 40 7.5
19dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.5
20dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 7.5
21dbj|AP005455.5| Oryza sativa (japonica cultivar-group) genomic D... 40 7.5
22emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 40 7.5 
>gb|BT017217.1| Zea mays clone EL01N0372E04.c mRNA sequence
          Length = 1252

 Score =  212 bits (107), Expect = 9e-52
 Identities = 188/215 (87%)
 Strand = Plus / Minus

                                                                       
Query: 337 gccctctttcttgatccgagaaggcctgacgatacggtcgatgatcccgtactccagggc 396
           ||||||||||||||||| ||| |||||||| ||||||||||||||||||||||| || ||
Sbjct: 880 gccctctttcttgatcctagacggcctgacaatacggtcgatgatcccgtactcgagagc 821

                                                                       
Query: 397 tccttcggcgtcgaagcgcttcgacctggacaagtcctcgtgaaccttctcaacagaatg 456
            |||||||||||||||||||||  ||| |||| |||||| || | |||||| ||||||||
Sbjct: 820 cccttcggcgtcgaagcgcttcaccctagacaggtcctcatggatcttctcgacagaatg 761

                                                                       
Query: 457 acccgtgtgctctgctagcttgccataaagatagttcttgatccgattaagttcgtttga 516
            || |||||| | || ||||||||||| |||||||||||||| ||  |||| ||||||| 
Sbjct: 760 gcctgtgtgccccgcgagcttgccatagagatagttcttgatgcggataagctcgtttgc 701

                                              
Query: 517 ttcgttttctatatcatcagcctggcctcgagctg 551
           ||||||||||||||| |||||||| ||||||||||
Sbjct: 700 ttcgttttctatatcgtcagcctgtcctcgagctg 666
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>gb|AY105451.1| Zea mays PCO122767 mRNA sequence
          Length = 709

 Score =  212 bits (107), Expect = 9e-52
 Identities = 188/215 (87%)
 Strand = Plus / Minus

                                                                       
Query: 337 gccctctttcttgatccgagaaggcctgacgatacggtcgatgatcccgtactccagggc 396
           ||||||||||||||||| ||| |||||||| ||||||||||||||||||||||| || ||
Sbjct: 493 gccctctttcttgatcctagacggcctgacaatacggtcgatgatcccgtactcgagagc 434

                                                                       
Query: 397 tccttcggcgtcgaagcgcttcgacctggacaagtcctcgtgaaccttctcaacagaatg 456
            |||||||||||||||||||||  ||| |||| |||||| || | |||||| ||||||||
Sbjct: 433 cccttcggcgtcgaagcgcttcaccctagacaggtcctcatggatcttctcgacagaatg 374

                                                                       
Query: 457 acccgtgtgctctgctagcttgccataaagatagttcttgatccgattaagttcgtttga 516
            || |||||| | || ||||||||||| |||||||||||||| ||  |||| ||||||| 
Sbjct: 373 gcctgtgtgccccgcgagcttgccatagagatagttcttgatgcggataagctcgtttgc 314

                                              
Query: 517 ttcgttttctatatcatcagcctggcctcgagctg 551
           ||||||||||||||| |||||||| ||||||||||
Sbjct: 313 ttcgttttctatatcgtcagcctgtcctcgagctg 279
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>dbj|AK104375.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-G04, full
           insert sequence
          Length = 1133

 Score =  147 bits (74), Expect = 4e-32
 Identities = 179/214 (83%)
 Strand = Plus / Minus

                                                                       
Query: 338 ccctctttcttgatccgagaaggcctgacgatacggtcgatgatcccgtactccagggct 397
           |||||||||||||| ||||||||||| |  |||||||| || ||||| || ||||  |||
Sbjct: 876 ccctctttcttgatgcgagaaggcctaataatacggtcaataatcccatattccaaagct 817

                                                                       
Query: 398 ccttcggcgtcgaagcgcttcgacctggacaagtcctcgtgaaccttctcaacagaatga 457
           ||||| || ||||||||||||  ||| || |  || || |||| ||| ||||||| ||||
Sbjct: 816 ccttcagcatcgaagcgcttcaccctagatagatcttcatgaatcttatcaacaggatga 757

                                                                       
Query: 458 cccgtgtgctctgctagcttgccataaagatagttcttgatccgattaagttcgtttgat 517
           || ||||||||||  | |||||  ||||||||||||||||||| | ||||||| |||| |
Sbjct: 756 cctgtgtgctctgacaacttgctgtaaagatagttcttgatcctaataagttcatttgct 697

                                             
Query: 518 tcgttttctatatcatcagcctggcctcgagctg 551
           || |||||||||||||||||||| ||||||||||
Sbjct: 696 tcattttctatatcatcagcctgccctcgagctg 663



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                  
Query: 280 catctactagccgagtcccagattccgcagttccttctt 318
           |||||||||||| ||||||||||| || || ||||||||
Sbjct: 928 catctactagccaagtcccagattacgtagatccttctt 890
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>dbj|AK099815.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013099L17, full
           insert sequence
          Length = 1243

 Score =  147 bits (74), Expect = 4e-32
 Identities = 179/214 (83%)
 Strand = Plus / Minus

                                                                       
Query: 338 ccctctttcttgatccgagaaggcctgacgatacggtcgatgatcccgtactccagggct 397
           |||||||||||||| ||||||||||| |  |||||||| || ||||| || ||||  |||
Sbjct: 894 ccctctttcttgatgcgagaaggcctaataatacggtcaataatcccatattccaaagct 835

                                                                       
Query: 398 ccttcggcgtcgaagcgcttcgacctggacaagtcctcgtgaaccttctcaacagaatga 457
           ||||| || ||||||||||||  ||| || |  || || |||| ||| ||||||| ||||
Sbjct: 834 ccttcagcatcgaagcgcttcaccctagatagatcttcatgaatcttatcaacaggatga 775

                                                                       
Query: 458 cccgtgtgctctgctagcttgccataaagatagttcttgatccgattaagttcgtttgat 517
           || ||||||||||  | |||||  ||||||||||||||||||| | ||||||| |||| |
Sbjct: 774 cctgtgtgctctgacaacttgctgtaaagatagttcttgatcctaataagttcatttgct 715

                                             
Query: 518 tcgttttctatatcatcagcctggcctcgagctg 551
           || |||||||||||||||||||| ||||||||||
Sbjct: 714 tcattttctatatcatcagcctgccctcgagctg 681



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                  
Query: 280 catctactagccgagtcccagattccgcagttccttctt 318
           |||||||||||| ||||||||||| || || ||||||||
Sbjct: 946 catctactagccaagtcccagattacgtagatccttctt 908
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>dbj|AK061385.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-305-A01, full
           insert sequence
          Length = 1133

 Score =  147 bits (74), Expect = 4e-32
 Identities = 179/214 (83%)
 Strand = Plus / Minus

                                                                       
Query: 338 ccctctttcttgatccgagaaggcctgacgatacggtcgatgatcccgtactccagggct 397
           |||||||||||||| ||||||||||| |  |||||||| || ||||| || ||||  |||
Sbjct: 876 ccctctttcttgatgcgagaaggcctaataatacggtcaataatcccatattccaaagct 817

                                                                       
Query: 398 ccttcggcgtcgaagcgcttcgacctggacaagtcctcgtgaaccttctcaacagaatga 457
           ||||| || ||||||||||||  ||| || |  || || |||| ||| ||||||| ||||
Sbjct: 816 ccttcagcatcgaagcgcttcaccctagatagatcttcatgaatcttatcaacaggatga 757

                                                                       
Query: 458 cccgtgtgctctgctagcttgccataaagatagttcttgatccgattaagttcgtttgat 517
           || ||||||||||  | |||||  ||||||||||||||||||| | ||||||| |||| |
Sbjct: 756 cctgtgtgctctgacaacttgctgtaaagatagttcttgatcctaataagttcatttgct 697

                                             
Query: 518 tcgttttctatatcatcagcctggcctcgagctg 551
           || |||||||||||||||||||| ||||||||||
Sbjct: 696 tcattttctatatcatcagcctgccctcgagctg 663



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                  
Query: 280 catctactagccgagtcccagattccgcagttccttctt 318
           |||||||||||| ||||||||||| || || ||||||||
Sbjct: 928 catctactagccaagtcccagattacgtagatccttctt 890
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 88/101 (87%)
 Strand = Plus / Minus

                                                                           
Query: 440     accttctcaacagaatgacccgtgtgctctgctagcttgccataaagatagttcttgatc 499
               ||||| ||||||| |||||| ||||||||||  | |||||  ||||||||||||||||||
Sbjct: 1951551 accttatcaacaggatgacctgtgtgctctgacaacttgctgtaaagatagttcttgatc 1951492

                                                        
Query: 500     cgattaagttcgtttgattcgttttctatatcatcagcctg 540
               | | ||||||| |||| ||| ||||||||||||||||||||
Sbjct: 1951491 ctaataagttcatttgcttcattttctatatcatcagcctg 1951451



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 69/81 (85%)
 Strand = Plus / Minus

                                                                           
Query: 338     ccctctttcttgatccgagaaggcctgacgatacggtcgatgatcccgtactccagggct 397
               |||||||||||||| ||||||||||| |  |||||||| || ||||| || ||||  |||
Sbjct: 1951928 ccctctttcttgatgcgagaaggcctaataatacggtcaataatcccatattccaaagct 1951869

                                    
Query: 398     ccttcggcgtcgaagcgcttc 418
               ||||| || ||||||||||||
Sbjct: 1951868 ccttcagcatcgaagcgcttc 1951848



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                      
Query: 280     catctactagccgagtcccagattccgcagttccttctt 318
               |||||||||||| ||||||||||| || || ||||||||
Sbjct: 1951980 catctactagccaagtcccagattacgtagatccttctt 1951942
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>dbj|AP003526.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0548D03
          Length = 156709

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 88/101 (87%)
 Strand = Plus / Minus

                                                                         
Query: 440   accttctcaacagaatgacccgtgtgctctgctagcttgccataaagatagttcttgatc 499
             ||||| ||||||| |||||| ||||||||||  | |||||  ||||||||||||||||||
Sbjct: 80331 accttatcaacaggatgacctgtgtgctctgacaacttgctgtaaagatagttcttgatc 80272

                                                      
Query: 500   cgattaagttcgtttgattcgttttctatatcatcagcctg 540
             | | ||||||| |||| ||| ||||||||||||||||||||
Sbjct: 80271 ctaataagttcatttgcttcattttctatatcatcagcctg 80231



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 69/81 (85%)
 Strand = Plus / Minus

                                                                         
Query: 338   ccctctttcttgatccgagaaggcctgacgatacggtcgatgatcccgtactccagggct 397
             |||||||||||||| ||||||||||| |  |||||||| || ||||| || ||||  |||
Sbjct: 80708 ccctctttcttgatgcgagaaggcctaataatacggtcaataatcccatattccaaagct 80649

                                  
Query: 398   ccttcggcgtcgaagcgcttc 418
             ||||| || ||||||||||||
Sbjct: 80648 ccttcagcatcgaagcgcttc 80628



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                    
Query: 280   catctactagccgagtcccagattccgcagttccttctt 318
             |||||||||||| ||||||||||| || || ||||||||
Sbjct: 80760 catctactagccaagtcccagattacgtagatccttctt 80722
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>gb|AC139211.13| Mus musculus chromosome 6, clone RP23-302O24, complete sequence
          Length = 154129

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 520    gttttctatatcatcagcctggc 542
              |||||||||||||||||||||||
Sbjct: 148686 gttttctatatcatcagcctggc 148708
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>gb|AC158683.2| Mus musculus 6 BAC RP23-328P16 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 203488

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 520    gttttctatatcatcagcctggc 542
              |||||||||||||||||||||||
Sbjct: 143790 gttttctatatcatcagcctggc 143768
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>emb|AL354738.13| Human DNA sequence from clone RP11-628O6 on chromosome 9 Contains part
             of a novel gene (FLJ20276), complete sequence
          Length = 64981

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 164   caacagattaaatgacatacatcca 188
             |||||||||||||||||| ||||||
Sbjct: 28635 caacagattaaatgacatccatcca 28659
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>gb|AY279311.1| Malus x domestica ATP-dependent Clp protease proteolytic subunit
           mRNA, partial cds
          Length = 364

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                        
Query: 505 aagttcgtttgattcgttttctatatcatcagcctggcctcgagc 549
           |||||| |||| ||| |||| ||||||||||||||| || |||||
Sbjct: 162 aagttcatttgcttcattttgtatatcatcagcctgaccacgagc 118
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>emb|CR376850.6| Zebrafish DNA sequence from clone DKEY-246K9 in linkage group 20,
              complete sequence
          Length = 243887

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 7      ctggatncaaactggcccaacaagaaca 34
              |||||| ||||||| |||||||||||||
Sbjct: 127215 ctggatgcaaactgtcccaacaagaaca 127188
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>ref|XM_479327.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 765

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 28  aagaacaataatccgtccatggag 51
           ||||||||||||| ||||||||||
Sbjct: 151 aagaacaataatcagtccatggag 174
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>gb|AC161286.2| Pan troglodytes BAC clone CH251-332L6 from chromosome 7, complete
              sequence
          Length = 172473

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 78     gtacatatgaaagaacagag 97
              ||||||||||||||||||||
Sbjct: 153229 gtacatatgaaagaacagag 153248
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>gb|AC161005.4| Pan troglodytes BAC clone CH251-668M6 from chromosome 7, complete
             sequence
          Length = 217746

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 78    gtacatatgaaagaacagag 97
             ||||||||||||||||||||
Sbjct: 16612 gtacatatgaaagaacagag 16631
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>gb|AC125160.3| Mus musculus BAC clone RP24-409P4 from chromosome 7, complete sequence
          Length = 178643

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 78    gtacatatgaaagaacagagaaga 101
             ||||| ||||||||||||||||||
Sbjct: 66718 gtacaaatgaaagaacagagaaga 66695
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>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome
          Length = 2932766

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 374     tcgatgatcccgtactccagggct 397
               |||| |||||||||||||||||||
Sbjct: 2015193 tcgaggatcccgtactccagggct 2015170
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>gb|AC161386.4| Pan troglodytes BAC clone CH251-497P4 from chromosome 7, complete
             sequence
          Length = 193048

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 78    gtacatatgaaagaacagag 97
             ||||||||||||||||||||
Sbjct: 83471 gtacatatgaaagaacagag 83490
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 28       aagaacaataatccgtccatggag 51
                ||||||||||||| ||||||||||
Sbjct: 26896641 aagaacaataatcagtccatggag 26896618
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 321     ggccggtggtcgagccgccc 340
               ||||||||||||||||||||
Sbjct: 5922373 ggccggtggtcgagccgccc 5922392
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>dbj|AP005455.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0503D09
          Length = 144443

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 28    aagaacaataatccgtccatggag 51
             ||||||||||||| ||||||||||
Sbjct: 45232 aagaacaataatcagtccatggag 45209
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>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 410     aagcgcttcgacctggacaa 429
               ||||||||||||||||||||
Sbjct: 3943555 aagcgcttcgacctggacaa 3943574


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,674,034
Number of Sequences: 3902068
Number of extensions: 3674034
Number of successful extensions: 66869
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 66676
Number of HSP's gapped (non-prelim): 190
length of query: 551
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 528
effective length of database: 17,143,297,704
effective search space: 9051661187712
effective search space used: 9051661187712
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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