ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd11a13
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AL606682.3|OSJN00085 Oryza sativa genomic DNA, chromosome 4,... 278 2e-71
2emb|AL606647.3|OSJN00096 Oryza sativa genomic DNA, chromosome 4,... 278 2e-71
3dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 278 2e-71
4dbj|AK067832.1| Oryza sativa (japonica cultivar-group) cDNA clon... 278 2e-71
5ref|XM_473465.1| Oryza sativa (japonica cultivar-group), predic... 274 2e-70
6gb|AF296824.1|AF296824 Zea mays genetic modifier (isr) mRNA, com... 256 6e-65
7gb|AF466202.2| Zea mays putative pol protein gene, partial cds; ... 256 6e-65
8gb|AY542311.1| Sorghum bicolor clone SB20O07 b1-1, b1-2, putativ... 248 1e-62
9gb|AC004694.1| Homo sapiens BAC clone CTB-152H24 from 7, complet... 42 1.6
10gb|AC010007.4| Drosophila melanogaster 3L BAC RP98-17K17 (Roswel... 42 1.6
11gb|AC091128.2| Drosophila melanogaster 3L BAC RP98-17O7 (Roswell... 42 1.6
12gb|AE003471.3| Drosophila melanogaster chromosome 3L, section 5 ... 42 1.6
13gb|AC005847.1|AC005847 Drosophila melanogaster DNA sequence (P1s... 42 1.6
14gb|AC145365.3| Oryza sativa (japonica cultivar-group) chromosome... 40 6.5
15gb|AC116500.13| Mus musculus chromosome 5, clone RP24-297N9, com... 40 6.5
16gb|AY658640.1| Synthetic construct Peudomonas aeruginosa clone F... 40 6.5
17gb|AE006695.1| Sulfolobus solfataricus P2 section 54 of 272 of t... 40 6.5
18emb|AL096861.9|HSDJ824H1 Human DNA sequence from clone RP5-824H1... 40 6.5
19emb|Y18930.1|SSU18930 Sulfolobus solfataricus 281 kb genomic DNA... 40 6.5
20emb|AL731643.4|OSJN00284 Oryza sativa genomic DNA, chromosome 4,... 40 6.5
21emb|AL731668.6| Mouse DNA sequence from clone RP23-430C13 on chr... 40 6.5
22gb|AC157774.5| Mus musculus chromosome 8, clone RP23-423E20, com... 40 6.5
23gb|AC006435.7|AC006435 Homo sapiens chromosome 17, clone RP5-59D... 40 6.5
24dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.5
25dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.5
26gb|AE004472.1| Pseudomonas aeruginosa PAO1, section 33 of 529 of... 40 6.5
27dbj|AP005658.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.5
28dbj|AP005461.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.5
29dbj|AK112587.1| Ciona intestinalis cDNA, clone:cieg004b10, full ... 40 6.5
30gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.5
31emb|AL662960.3|OSJN00162 Oryza sativa genomic DNA, chromosome 4,... 40 6.5
32emb|AL604043.11| Mouse DNA sequence from clone RP23-391H8 on chr... 40 6.5 
>emb|AL606682.3|OSJN00085 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0065O17,
            complete sequence
          Length = 167269

 Score =  278 bits (140), Expect = 2e-71
 Identities = 270/314 (85%), Gaps = 6/314 (1%)
 Strand = Plus / Minus

                                                                        
Query: 167  agaaacatcactcctngatcacaatctccatgtccatgtc------agattgtctgcccc 220
            ||||| ||||||||| ||||||||||||||||||||||||      ||||  ||||||||
Sbjct: 6231 agaaaaatcactcctcgatcacaatctccatgtccatgtccatgtcagatcttctgcccc 6172

                                                                        
Query: 221  tgcgcccaagaacctcgccattggcgagcctctgcaggtcaacaacagagagttgatcga 280
            || ||||||||| |||||||||||| | ||| ||||||||| | ||||| || ||||| |
Sbjct: 6171 tgagcccaagaatctcgccattggcaatcctttgcaggtcagcgacagatagctgatcaa 6112

                                                                        
Query: 281  gccatctcacaacatggtttgctgcatgaagttcataggcagggtgccggcttgcaaccg 340
            ||||||| ||||||||||||||||| || || |||||||||||||  |||||||||||||
Sbjct: 6111 gccatcttacaacatggtttgctgcttggagctcataggcagggtatcggcttgcaaccg 6052

                                                                        
Query: 341  ccacacacctcatcccagcagtatgtgcagactgcgtcgtcaagtttgagctacccatca 400
            | ||||||||||||||||||||||| ||||| |   | ||| | |||||| |||||| ||
Sbjct: 6051 caacacacctcatcccagcagtatgcgcagattctattgtcgaatttgagttacccagca 5992

                                                                        
Query: 401  caagacagacatcaggctcaagaccaagctggtctgctgcaacctcaaacatctcaccct 460
            ||||||| |||||||||||||||||||| ||  ||||||  |||||||||||||| ||||
Sbjct: 5991 caagacaaacatcaggctcaagaccaagttgccctgctgtgacctcaaacatctccccct 5932

                          
Query: 461  cgggtttccctcgg 474
            ||||||||||||||
Sbjct: 5931 cgggtttccctcgg 5918
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>emb|AL606647.3|OSJN00096 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0012E24,
              complete sequence
          Length = 127506

 Score =  278 bits (140), Expect = 2e-71
 Identities = 270/314 (85%), Gaps = 6/314 (1%)
 Strand = Plus / Minus

                                                                          
Query: 167    agaaacatcactcctngatcacaatctccatgtccatgtc------agattgtctgcccc 220
              ||||| ||||||||| ||||||||||||||||||||||||      ||||  ||||||||
Sbjct: 112050 agaaaaatcactcctcgatcacaatctccatgtccatgtccatgtcagatcttctgcccc 111991

                                                                          
Query: 221    tgcgcccaagaacctcgccattggcgagcctctgcaggtcaacaacagagagttgatcga 280
              || ||||||||| |||||||||||| | ||| ||||||||| | ||||| || ||||| |
Sbjct: 111990 tgagcccaagaatctcgccattggcaatcctttgcaggtcagcgacagatagctgatcaa 111931

                                                                          
Query: 281    gccatctcacaacatggtttgctgcatgaagttcataggcagggtgccggcttgcaaccg 340
              ||||||| ||||||||||||||||| || || |||||||||||||  |||||||||||||
Sbjct: 111930 gccatcttacaacatggtttgctgcttggagctcataggcagggtatcggcttgcaaccg 111871

                                                                          
Query: 341    ccacacacctcatcccagcagtatgtgcagactgcgtcgtcaagtttgagctacccatca 400
              | ||||||||||||||||||||||| ||||| |   | ||| | |||||| |||||| ||
Sbjct: 111870 caacacacctcatcccagcagtatgcgcagattctattgtcgaatttgagttacccagca 111811

                                                                          
Query: 401    caagacagacatcaggctcaagaccaagctggtctgctgcaacctcaaacatctcaccct 460
              ||||||| |||||||||||||||||||| ||  ||||||  |||||||||||||| ||||
Sbjct: 111810 caagacaaacatcaggctcaagaccaagttgccctgctgtgacctcaaacatctccccct 111751

                            
Query: 461    cgggtttccctcgg 474
              ||||||||||||||
Sbjct: 111750 cgggtttccctcgg 111737
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  278 bits (140), Expect = 2e-71
 Identities = 270/314 (85%), Gaps = 6/314 (1%)
 Strand = Plus / Minus

                                                                            
Query: 167      agaaacatcactcctngatcacaatctccatgtccatgtc------agattgtctgcccc 220
                ||||| ||||||||| ||||||||||||||||||||||||      ||||  ||||||||
Sbjct: 27843378 agaaaaatcactcctcgatcacaatctccatgtccatgtccatgtcagatcttctgcccc 27843319

                                                                            
Query: 221      tgcgcccaagaacctcgccattggcgagcctctgcaggtcaacaacagagagttgatcga 280
                || ||||||||| |||||||||||| | ||| ||||||||| | ||||| || ||||| |
Sbjct: 27843318 tgagcccaagaatctcgccattggcaatcctttgcaggtcagcgacagatagctgatcaa 27843259

                                                                            
Query: 281      gccatctcacaacatggtttgctgcatgaagttcataggcagggtgccggcttgcaaccg 340
                ||||||| ||||||||||||||||| || || |||||||||||||  |||||||||||||
Sbjct: 27843258 gccatcttacaacatggtttgctgcttggagctcataggcagggtatcggcttgcaaccg 27843199

                                                                            
Query: 341      ccacacacctcatcccagcagtatgtgcagactgcgtcgtcaagtttgagctacccatca 400
                | ||||||||||||||||||||||| ||||| |   | ||| | |||||| |||||| ||
Sbjct: 27843198 caacacacctcatcccagcagtatgcgcagattctattgtcgaatttgagttacccagca 27843139

                                                                            
Query: 401      caagacagacatcaggctcaagaccaagctggtctgctgcaacctcaaacatctcaccct 460
                ||||||| |||||||||||||||||||| ||  ||||||  |||||||||||||| ||||
Sbjct: 27843138 caagacaaacatcaggctcaagaccaagttgccctgctgtgacctcaaacatctccccct 27843079

                              
Query: 461      cgggtttccctcgg 474
                ||||||||||||||
Sbjct: 27843078 cgggtttccctcgg 27843065



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 263     caacagagagttgatcgagc 282
               ||||||||||||||||||||
Sbjct: 7635351 caacagagagttgatcgagc 7635332
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>dbj|AK067832.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013121O07, full
            insert sequence
          Length = 1499

 Score =  278 bits (140), Expect = 2e-71
 Identities = 270/314 (85%), Gaps = 6/314 (1%)
 Strand = Plus / Minus

                                                                        
Query: 167  agaaacatcactcctngatcacaatctccatgtccatgtc------agattgtctgcccc 220
            ||||| ||||||||| ||||||||||||||||||||||||      ||||  ||||||||
Sbjct: 1228 agaaaaatcactcctcgatcacaatctccatgtccatgtccatgtcagatcttctgcccc 1169

                                                                        
Query: 221  tgcgcccaagaacctcgccattggcgagcctctgcaggtcaacaacagagagttgatcga 280
            || ||||||||| |||||||||||| | ||| ||||||||| | ||||| || ||||| |
Sbjct: 1168 tgagcccaagaatctcgccattggcaatcctttgcaggtcagcgacagatagctgatcaa 1109

                                                                        
Query: 281  gccatctcacaacatggtttgctgcatgaagttcataggcagggtgccggcttgcaaccg 340
            ||||||| ||||||||||||||||| || || |||||||||||||  |||||||||||||
Sbjct: 1108 gccatcttacaacatggtttgctgcttggagctcataggcagggtatcggcttgcaaccg 1049

                                                                        
Query: 341  ccacacacctcatcccagcagtatgtgcagactgcgtcgtcaagtttgagctacccatca 400
            | ||||||||||||||||||||||| ||||| |   | ||| | |||||| |||||| ||
Sbjct: 1048 caacacacctcatcccagcagtatgcgcagattctattgtcgaatttgagttacccagca 989

                                                                        
Query: 401  caagacagacatcaggctcaagaccaagctggtctgctgcaacctcaaacatctcaccct 460
            ||||||| |||||||||||||||||||| ||  ||||||  |||||||||||||| ||||
Sbjct: 988  caagacaaacatcaggctcaagaccaagttgccctgctgtgacctcaaacatctccccct 929

                          
Query: 461  cgggtttccctcgg 474
            ||||||||||||||
Sbjct: 928  cgggtttccctcgg 915
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>ref|XM_473465.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1053

 Score =  274 bits (138), Expect = 2e-70
 Identities = 246/282 (87%)
 Strand = Plus / Minus

                                                                        
Query: 193  tccatgtccatgtcagattgtctgcccctgcgcccaagaacctcgccattggcgagcctc 252
            ||||||||||||||||||  |||||||||| ||||||||| |||||||||||| | ||| 
Sbjct: 1028 tccatgtccatgtcagatcttctgcccctgagcccaagaatctcgccattggcaatcctt 969

                                                                        
Query: 253  tgcaggtcaacaacagagagttgatcgagccatctcacaacatggtttgctgcatgaagt 312
            ||||||||| | ||||| || ||||| |||||||| ||||||||||||||||| || || 
Sbjct: 968  tgcaggtcagcgacagatagctgatcaagccatcttacaacatggtttgctgcttggagc 909

                                                                        
Query: 313  tcataggcagggtgccggcttgcaaccgccacacacctcatcccagcagtatgtgcagac 372
            |||||||||||||  |||||||||||||| ||||||||||||||||||||||| ||||| 
Sbjct: 908  tcataggcagggtatcggcttgcaaccgcaacacacctcatcccagcagtatgcgcagat 849

                                                                        
Query: 373  tgcgtcgtcaagtttgagctacccatcacaagacagacatcaggctcaagaccaagctgg 432
            |   | ||| | |||||| |||||| ||||||||| |||||||||||||||||||| || 
Sbjct: 848  tctattgtcgaatttgagttacccagcacaagacaaacatcaggctcaagaccaagttgc 789

                                                      
Query: 433  tctgctgcaacctcaaacatctcaccctcgggtttccctcgg 474
             ||||||  |||||||||||||| ||||||||||||||||||
Sbjct: 788  cctgctgtgacctcaaacatctccccctcgggtttccctcgg 747
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>gb|AF296824.1|AF296824 Zea mays genetic modifier (isr) mRNA, complete cds
          Length = 1480

 Score =  256 bits (129), Expect = 6e-65
 Identities = 257/300 (85%)
 Strand = Plus / Minus

                                                                        
Query: 172  catcactcctngatcacaatctccatgtccatgtcagattgtctgcccctgcgcccaaga 231
            ||||| ||||  |||||||| ||||| ||||||||||||| ||| |||||||| |||| |
Sbjct: 1218 catcattcctcaatcacaatttccatatccatgtcagattctctacccctgcgaccaata 1159

                                                                        
Query: 232  acctcgccattggcgagcctctgcaggtcaacaacagagagttgatcgagccatctcaca 291
            || || ||||| || |||||||||| |||||||| |||||| ||||| ||||||||||||
Sbjct: 1158 acttcaccattagcaagcctctgcaagtcaacaatagagagctgatcaagccatctcaca 1099

                                                                        
Query: 292  acatggtttgctgcatgaagttcataggcagggtgccggcttgcaaccgccacacacctc 351
            |||||||||||||  || || |||||||||||||| |||| |||||| ||||||||||||
Sbjct: 1098 acatggtttgctgattggagctcataggcagggtgtcggcctgcaactgccacacacctc 1039

                                                                        
Query: 352  atcccagcagtatgtgcagactgcgtcgtcaagtttgagctacccatcacaagacagaca 411
            ||||||||  |||||||||| | |||||||||||||||| |||| | ||||| |||| ||
Sbjct: 1038 atcccagcgttatgtgcagattccgtcgtcaagtttgagttaccaaacacaacacaggca 979

                                                                        
Query: 412  tcaggctcaagaccaagctggtctgctgcaacctcaaacatctcaccctcgggtttccct 471
            || || || |||||||| || || ||||| || |||||||||||||| || |||||||||
Sbjct: 978  tctggttccagaccaagttgctccgctgcgacttcaaacatctcaccatcaggtttccct 919
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>gb|AF466202.2| Zea mays putative pol protein gene, partial cds; and putative gag-pol
             precursor -orf2, putative Fourf gag/pol protein, putative
             NADP-dependent malic enzyme, putative argonaute protein,
             putative pinhead protein, putative pol protein, putative
             gag protein, putative TNP2, r1-B73 proteins, putative
             genetic modifier, putative S-receptor kinase, putative
             aldose reductase-related protein, putative glutathione
             peroxidase, putative glycerol 3-phosphate permease,
             putative response regulator, and putative 4-coumarate-CoA
             ligase-like protein genes, complete cds
          Length = 290350

 Score =  256 bits (129), Expect = 6e-65
 Identities = 257/300 (85%)
 Strand = Plus / Plus

                                                                         
Query: 172   catcactcctngatcacaatctccatgtccatgtcagattgtctgcccctgcgcccaaga 231
             ||||| ||||  |||||||| ||||| ||||||||||||| ||| |||||||| |||| |
Sbjct: 91369 catcattcctcaatcacaatttccatatccatgtcagattctctacccctgcgaccaata 91428

                                                                         
Query: 232   acctcgccattggcgagcctctgcaggtcaacaacagagagttgatcgagccatctcaca 291
             || || ||||| || |||||||||| |||||||| |||||| ||||| ||||||||||||
Sbjct: 91429 acttcaccattagcaagcctctgcaagtcaacaatagagagctgatcaagccatctcaca 91488

                                                                         
Query: 292   acatggtttgctgcatgaagttcataggcagggtgccggcttgcaaccgccacacacctc 351
             |||||||||||||  || || |||||||||||||| |||| |||||| ||||||||||||
Sbjct: 91489 acatggtttgctgattggagctcataggcagggtgtcggcctgcaactgccacacacctc 91548

                                                                         
Query: 352   atcccagcagtatgtgcagactgcgtcgtcaagtttgagctacccatcacaagacagaca 411
             ||||||||  |||||||||| | |||||||||||||||| |||| | ||||| |||| ||
Sbjct: 91549 atcccagcgttatgtgcagattccgtcgtcaagtttgagttaccaaacacaacacaggca 91608

                                                                         
Query: 412   tcaggctcaagaccaagctggtctgctgcaacctcaaacatctcaccctcgggtttccct 471
             || || || |||||||| || || ||||| || |||||||||||||| || |||||||||
Sbjct: 91609 tctggttccagaccaagttgctccgctgcgacttcaaacatctcaccatcaggtttccct 91668
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>gb|AY542311.1| Sorghum bicolor clone SB20O07 b1-1, b1-2, putative genetic modifier,
             hypothetical protein, putative NAM protein, putative
             cis-zeatin O-glucosyltransferases, putative small nuclear
             ribonucleoprotein, putative cis-zeatin
             O-glucosyltransferase, putative glutathione peroxidase,
             putative copper-exporting ATPases, putative
             serine/threonine dehydratase, and putative actin
             depolymerizing factor genes, complete cds; and
             hypothetical protein gene, partial cds
          Length = 157237

 Score =  248 bits (125), Expect = 1e-62
 Identities = 263/308 (85%), Gaps = 1/308 (0%)
 Strand = Plus / Plus

                                                                         
Query: 164   tgcagaaacatcactcctngatcacaatctccatgtccatgtcagattgtctgcccctgc 223
             ||||||| ||||| |||| ||||||||| ||||| ||||||||||||| ||| |||||||
Sbjct: 48028 tgcagaagcatcattcctcgatcacaatttccatatccatgtcagattctctacccctgc 48087

                                                                         
Query: 224   gcccaagaacctcgccattggcgagcctctgcaggtcaacaacagagagttgatcgagcc 283
             | |||| ||| || ||||| || |||||||||| |||||||| ||||| ||| || ||||
Sbjct: 48088 gaccaataacttcaccattagcaagcctctgcaagtcaacaatagagaattggtcaagcc 48147

                                                                         
Query: 284   atctcacaacatggtttgctgcatgaagttcataggcagggtgccggcttgcaaccgcca 343
             |||||||||||||| ||||||| || || |||||||||||||| |||| |||||| ||||
Sbjct: 48148 atctcacaacatggcttgctgcttggagctcataggcagggtgtcggcctgcaactgcca 48207

                                                                         
Query: 344   cacacctcatcccagcagtatgtgcagactgcgtcgtcaagtttgagctacccatcacaa 403
             |||||||||||| |||  |||||||||| | |||||||||||||||| |||| | |||||
Sbjct: 48208 cacacctcatcctagcgttatgtgcagattccgtcgtcaagtttgagttaccaaacacaa 48267

                                                                         
Query: 404   gacagacatcaggctcaagaccaagctggtctgctgcaacctcaaacatctcaccctcgg 463
              ||| ||||| ||||| |||| ||| || |||||  | ||||||||||||||||| || |
Sbjct: 48268 -acaaacatctggctccagactaagttgctctgccacgacctcaaacatctcaccatcag 48326

                     
Query: 464   gtttccct 471
             ||||||||
Sbjct: 48327 gtttccct 48334
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>gb|AC004694.1| Homo sapiens BAC clone CTB-152H24 from 7, complete sequence
          Length = 63749

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 102   cacaaaatgtaatgcagtact 122
             |||||||||||||||||||||
Sbjct: 56083 cacaaaatgtaatgcagtact 56103
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>gb|AC010007.4| Drosophila melanogaster 3L BAC RP98-17K17 (Roswell Park Cancer
             Institute Drosophila BAC Library) complete sequence
          Length = 175481

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 33    tttagttatgcattacaagaa 53
             |||||||||||||||||||||
Sbjct: 66613 tttagttatgcattacaagaa 66633
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>gb|AC091128.2| Drosophila melanogaster 3L BAC RP98-17O7 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 170465

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 33     tttagttatgcattacaagaa 53
              |||||||||||||||||||||
Sbjct: 167140 tttagttatgcattacaagaa 167160
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>gb|AE003471.3| Drosophila melanogaster chromosome 3L, section 5 of 83 of the complete
             sequence
          Length = 302131

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 33    tttagttatgcattacaagaa 53
             |||||||||||||||||||||
Sbjct: 53355 tttagttatgcattacaagaa 53375
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>gb|AC005847.1|AC005847 Drosophila melanogaster DNA sequence (P1s DS03179 (D226), DS06357 (D230),
              DS03404 (D231), DS06962 (D232), and DS07291 (D240)),
              complete sequence
          Length = 268369

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 33     tttagttatgcattacaagaa 53
              |||||||||||||||||||||
Sbjct: 159053 tttagttatgcattacaagaa 159033
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>gb|AC145365.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0069E11, complete sequence
          Length = 136959

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 263   caacagagagttgatcgagc 282
             ||||||||||||||||||||
Sbjct: 82039 caacagagagttgatcgagc 82020
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>gb|AC116500.13| Mus musculus chromosome 5, clone RP24-297N9, complete sequence
          Length = 177689

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 120   actgaagttacaacacagtt 139
             ||||||||||||||||||||
Sbjct: 36167 actgaagttacaacacagtt 36186
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>gb|AY658640.1| Synthetic construct Peudomonas aeruginosa clone FLH034168.01F
           PA0343 gene, partial cds
          Length = 798

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 230 gaacctcgccattggcgagc 249
           ||||||||||||||||||||
Sbjct: 222 gaacctcgccattggcgagc 241
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>gb|AE006695.1| Sulfolobus solfataricus P2 section 54 of 272 of the complete genome
          Length = 13527

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 256   aggtcaacaacagagagttg 275
             ||||||||||||||||||||
Sbjct: 12823 aggtcaacaacagagagttg 12804
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>emb|AL096861.9|HSDJ824H1 Human DNA sequence from clone RP5-824H1 on chromosome Xq27.1-28,
             complete sequence
          Length = 129686

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 32    gtttagttatgcattacaagaaaa 55
             ||||||||| ||||||||||||||
Sbjct: 78085 gtttagttaggcattacaagaaaa 78062
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>emb|Y18930.1|SSU18930 Sulfolobus solfataricus 281 kb genomic DNA fragment, strain P2
          Length = 281244

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 256    aggtcaacaacagagagttg 275
              ||||||||||||||||||||
Sbjct: 131778 aggtcaacaacagagagttg 131797
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>emb|AL731643.4|OSJN00284 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0085C10,
             complete sequence
          Length = 202924

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 263   caacagagagttgatcgagc 282
             ||||||||||||||||||||
Sbjct: 20624 caacagagagttgatcgagc 20605
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>emb|AL731668.6| Mouse DNA sequence from clone RP23-430C13 on chromosome 11 no genes,
            complete sequence
          Length = 55004

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 141  tatattagtagtagataagt 160
            ||||||||||||||||||||
Sbjct: 9105 tatattagtagtagataagt 9124
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>gb|AC157774.5| Mus musculus chromosome 8, clone RP23-423E20, complete sequence
          Length = 198967

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 415   ggctcaagaccaagctggtc 434
             ||||||||||||||||||||
Sbjct: 86721 ggctcaagaccaagctggtc 86702
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>gb|AC006435.7|AC006435 Homo sapiens chromosome 17, clone RP5-59D14, complete sequence
          Length = 139267

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 435    tgctgcaacctcaaacatct 454
              ||||||||||||||||||||
Sbjct: 113321 tgctgcaacctcaaacatct 113302
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 263     caacagagagttgatcgagc 282
               ||||||||||||||||||||
Sbjct: 8403113 caacagagagttgatcgagc 8403094
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 427      agctggtctgctgcaacctc 446
                ||||||||||||||||||||
Sbjct: 22121323 agctggtctgctgcaacctc 22121342
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>gb|AE004472.1| Pseudomonas aeruginosa PAO1, section 33 of 529 of the complete genome
          Length = 10474

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 230  gaacctcgccattggcgagc 249
            ||||||||||||||||||||
Sbjct: 3308 gaacctcgccattggcgagc 3289
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>dbj|AP005658.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0620D11
          Length = 140245

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 427   agctggtctgctgcaacctc 446
             ||||||||||||||||||||
Sbjct: 38622 agctggtctgctgcaacctc 38641
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>dbj|AP005461.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0612G07
          Length = 182548

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 427    agctggtctgctgcaacctc 446
              ||||||||||||||||||||
Sbjct: 159196 agctggtctgctgcaacctc 159215
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>dbj|AK112587.1| Ciona intestinalis cDNA, clone:cieg004b10, full insert sequence
          Length = 2585

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 48   caagaaaacaagaagtgaac 67
            ||||||||||||||||||||
Sbjct: 2489 caagaaaacaagaagtgaac 2470
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 263     caacagagagttgatcgagc 282
               ||||||||||||||||||||
Sbjct: 8473876 caacagagagttgatcgagc 8473857
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>emb|AL662960.3|OSJN00162 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0021F22,
              complete sequence
          Length = 181498

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 263    caacagagagttgatcgagc 282
              ||||||||||||||||||||
Sbjct: 157824 caacagagagttgatcgagc 157805
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>emb|AL604043.11| Mouse DNA sequence from clone RP23-391H8 on chromosome 11, complete
              sequence
          Length = 221374

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 340    gccacacacctcatcccagc 359
              ||||||||||||||||||||
Sbjct: 181672 gccacacacctcatcccagc 181653


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,869,252
Number of Sequences: 3902068
Number of extensions: 3869252
Number of successful extensions: 77160
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 76983
Number of HSP's gapped (non-prelim): 171
length of query: 482
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 460
effective length of database: 17,147,199,772
effective search space: 7887711895120
effective search space used: 7887711895120
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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