ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbasd11a10 |
|---|---|
| Clone Library Name | barley_pub |
>EXT2_BOVIN (O77783) Exostosin-2 (EC 2.4.1.224) (EC 2.4.1.225)| (Glucuronosyl-N-acetylglucosaminyl-proteoglycan/N- acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase) (HS-polymerase) (HS-POL) (Multiple exostoses protein 2 homolog) Length = 718 Score = 50.4 bits (119), Expect = 5e-06 Identities = 24/53 (45%), Positives = 32/53 (60%) Frame = -1 Query: 681 GCIPVIIADDIVLPFADAIPWDEIGVFVAEDDVPKLDTILTSIPMEVILRKQR 523 GC+PVIIAD VLPF++ + W V V E+ + + +IL SIP I QR Sbjct: 338 GCVPVIIADSYVLPFSEVLDWKRASVVVPEEKMSDVYSILQSIPRRQIEEMQR 390
>EXT2_HUMAN (Q93063) Exostosin-2 (EC 2.4.1.224) (EC 2.4.1.225)| (Glucuronosyl-N-acetylglucosaminyl-proteoglycan/N- acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase) (Putative tumor suppressor protein EXT2) (Multiple exostoses protein Length = 718 Score = 50.1 bits (118), Expect = 6e-06 Identities = 22/53 (41%), Positives = 32/53 (60%) Frame = -1 Query: 681 GCIPVIIADDIVLPFADAIPWDEIGVFVAEDDVPKLDTILTSIPMEVILRKQR 523 GC+PV+IAD +LPF++ + W V V E+ + + +IL SIP I QR Sbjct: 338 GCVPVVIADSYILPFSEVLDWKRASVVVPEEKMSDVYSILQSIPQRQIEEMQR 390
>EXT2_MOUSE (P70428) Exostosin-2 (EC 2.4.1.224) (EC 2.4.1.225)| (Glucuronosyl-N-acetylglucosaminyl-proteoglycan/N- acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase) (Multiple exostoses protein 2 homolog) Length = 718 Score = 49.3 bits (116), Expect = 1e-05 Identities = 21/53 (39%), Positives = 33/53 (62%) Frame = -1 Query: 681 GCIPVIIADDIVLPFADAIPWDEIGVFVAEDDVPKLDTILTSIPMEVILRKQR 523 GC+PV+IAD +LPF++ + W + V V E+ + + +IL +IP I QR Sbjct: 338 GCVPVVIADSYILPFSEVLDWKKASVVVPEEKMSDVYSILQNIPQRQIEEMQR 390
>EXT1_CAEEL (O01704) Multiple exostoses homolog 1 (Related to mammalian RIB| protein 1) Length = 378 Score = 43.9 bits (102), Expect = 5e-04 Identities = 17/42 (40%), Positives = 27/42 (64%) Frame = -1 Query: 681 GCIPVIIADDIVLPFADAIPWDEIGVFVAEDDVPKLDTILTS 556 GC+PV+I+D +LPF++ I W+ + VAE D + +L S Sbjct: 288 GCVPVVISDSWILPFSETIDWNSAAIVVAERDALSIPELLMS 329
>EXT1_DROME (Q9V730) Exostosin-1 (EC 2.4.1.224) (EC 2.4.1.225) (Protein| tout-velu) Length = 760 Score = 38.9 bits (89), Expect = 0.015 Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 2/54 (3%) Frame = -1 Query: 681 GCIPVIIADDIVLPFADAIPWDEIGVFVAEDDVPKLDTILTSIPMEVI--LRKQ 526 GCIPV++++ VLPF I W + ++ E + ++ I+ SIP E I LR+Q Sbjct: 351 GCIPVLLSNAWVLPFESKIDWKQAAIWADERLLLQVPDIVRSIPAERIFALRQQ 404
>EXT2_DROME (Q9Y169) Exostosin-2 (EC 2.4.1.224) (EC 2.4.1.225) (Protein sister| of tout-velu) Length = 717 Score = 37.7 bits (86), Expect = 0.033 Identities = 19/52 (36%), Positives = 28/52 (53%) Frame = -1 Query: 678 CIPVIIADDIVLPFADAIPWDEIGVFVAEDDVPKLDTILTSIPMEVILRKQR 523 CIPVI D+ VLPF D I W V + E+++ + L +I I+ Q+ Sbjct: 339 CIPVIAVDNYVLPFEDVIDWSLASVRIRENELHSVMQKLKAISSVKIVEMQK 390
>EXTL3_HUMAN (O43909) Exostosin-like 3 (EC 2.4.1.223)| (Glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase) (Putative tumor suppressor protein EXTL3) (Multiple exostosis-like protein 3) (Hereditary multiple exostoses gene isolog) (E Length = 919 Score = 35.4 bits (80), Expect = 0.16 Identities = 14/53 (26%), Positives = 30/53 (56%) Frame = -1 Query: 681 GCIPVIIADDIVLPFADAIPWDEIGVFVAEDDVPKLDTILTSIPMEVILRKQR 523 G +PV++ + + LP+ D + W+E + V + V ++ +L S+ +L +R Sbjct: 458 GAVPVVLGEQVQLPYQDMLQWNEAALVVPKPRVTEVHFLLRSLSDSDLLAMRR 510
>EXTL3_MOUSE (Q9WVL6) Exostosin-like 3 (EC 2.4.1.-) (Multiple exostosis-like| protein 3) Length = 918 Score = 35.0 bits (79), Expect = 0.21 Identities = 14/53 (26%), Positives = 30/53 (56%) Frame = -1 Query: 681 GCIPVIIADDIVLPFADAIPWDEIGVFVAEDDVPKLDTILTSIPMEVILRKQR 523 G +PV++ + + LP+ D + W+E + V + V ++ +L S+ +L +R Sbjct: 457 GAVPVVLGEQVQLPYHDMLQWNEAALVVPKPRVTEVHFLLRSLSDSDLLAMRR 509
>ICP4_HHV11 (P08392) Trans-acting transcriptional protein ICP4 (Transcriptional| activator IE175) (Alpha-4 protein) Length = 1298 Score = 34.7 bits (78), Expect = 0.28 Identities = 15/41 (36%), Positives = 20/41 (48%) Frame = -3 Query: 469 GWGRLPPDPERAGAEAPAQQERVPDPGAEGAELDPGPQGRP 347 G G PP +++GA+AP R P P PGP+ P Sbjct: 740 GGGPRPPKTKKSGADAPGSDARAPLPAPAPPSTPPGPEPAP 780
>IER5_MOUSE (O89113) Immediate early response gene 5 protein| Length = 308 Score = 34.3 bits (77), Expect = 0.36 Identities = 21/63 (33%), Positives = 25/63 (39%) Frame = -3 Query: 484 PAARAGWGRLPPDPERAGAEAPAQQERVPDPGAEGAELDPGPQGRPEAMVGSSGTGIGAM 305 P ARA W P+PE P + PGA +E G EA+ G A Sbjct: 89 PVARAAW----PEPEPQPQPQPQRPSVCHTPGAGSSEPVAAVAGSGEALRGGEEDSAAAA 144 Query: 304 WGR 296 WGR Sbjct: 145 WGR 147
>EXT2_CAEEL (O01705) Exostosin-2 (EC 2.4.1.223) (EC 2.4.1.224)| (Glucuronyl-galactosyl-proteoglycan/Glucuronosyl-N- acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase) (Multiple exostoses homolog 2) Length = 814 Score = 33.9 bits (76), Expect = 0.47 Identities = 16/54 (29%), Positives = 29/54 (53%) Frame = -1 Query: 681 GCIPVIIADDIVLPFADAIPWDEIGVFVAEDDVPKLDTILTSIPMEVILRKQRL 520 GCIP+I+++ +LPF D I W + +P+ I+ S + I+ +R+ Sbjct: 357 GCIPIILSNSQLLPFQDLIDWRRATYRLPLARLPEAHFIVQSFEISDIIEMRRV 410
>UL61_HCMVA (P16818) Hypothetical protein UL61| Length = 431 Score = 33.5 bits (75), Expect = 0.62 Identities = 28/74 (37%), Positives = 32/74 (43%), Gaps = 11/74 (14%) Frame = -3 Query: 484 PAARAGWGRL-PPDPERAGAEAPAQQERVP----DPGAEGAELDPG----PQGRPEAMVG 332 PA R G GR P P + A P + R P DPG E E G P G P A G Sbjct: 225 PAPRGGRGRARTPGPVHSAAGGPGSRRRSPGAARDPGPEPGEERGGGGKPPLGSPRATDG 284 Query: 331 S--SGTGIGAMWGR 296 + G G+ A GR Sbjct: 285 NRDPGAGVPARPGR 298
>ADDA_RAT (Q63028) Alpha-adducin (Erythrocyte adducin alpha subunit)| Length = 735 Score = 33.5 bits (75), Expect = 0.62 Identities = 15/34 (44%), Positives = 18/34 (52%) Frame = -3 Query: 448 DPERAGAEAPAQQERVPDPGAEGAELDPGPQGRP 347 DPE A A AP +E EG+ +DPG G P Sbjct: 676 DPEPASASAPGAEEVASPATEEGSPMDPGSDGSP 709
>IF2_GLUOX (Q5FQM3) Translation initiation factor IF-2| Length = 917 Score = 33.5 bits (75), Expect = 0.62 Identities = 22/60 (36%), Positives = 24/60 (40%) Frame = -3 Query: 439 RAGAEAPAQQERVPDPGAEGAELDPGPQGRPEAMVGSSGTGIGAMWGRCSVRTRCERTDE 260 R+GA A ER P P G P P RP A G G GR VR E D+ Sbjct: 244 RSGAAAGGDDERRPAPRRSGPGAPPAPPRRPSA-PSRKGGGSDRRSGRIDVRAAIEGDDD 302
>WNK2_HUMAN (Q9Y3S1) Serine/threonine-protein kinase WNK2 (EC 2.7.11.1)| (Protein kinase with no lysine 2) (Protein kinase, lysine-deficient 2) Length = 2297 Score = 33.1 bits (74), Expect = 0.81 Identities = 19/46 (41%), Positives = 19/46 (41%) Frame = -3 Query: 484 PAARAGWGRLPPDPERAGAEAPAQQERVPDPGAEGAELDPGPQGRP 347 PAA P P AG E QE PDP A E P P G P Sbjct: 98 PAALVAQPGAPGAPADAGPEPVGTQEPGPDPIAAAVETAPAPDGGP 143
>CO3A1_MOUSE (P08121) Collagen alpha-1(III) chain precursor| Length = 1464 Score = 32.7 bits (73), Expect = 1.1 Identities = 23/57 (40%), Positives = 25/57 (43%) Frame = -3 Query: 487 VPAARAGWGRLPPDPERAGAEAPAQQERVPDPGAEGAELDPGPQGRPEAMVGSSGTG 317 +P AR G G PP PE G + PA PG GA PG QG P G G Sbjct: 690 IPGARGGAG--PPGPE--GGKGPA-----GPPGPPGASGSPGLQGMPGERGGPGSPG 737
>ATG4D_MOUSE (Q8BGV9) Cysteine protease ATG4D (EC 3.4.22.-) (Autophagy-related| protein 4 homolog D) (Autophagin-4) (Autophagy-related cysteine endopeptidase 4) (AUT-like 4 cysteine endopeptidase) Length = 474 Score = 32.7 bits (73), Expect = 1.1 Identities = 21/55 (38%), Positives = 24/55 (43%) Frame = -3 Query: 484 PAARAGWGRLPPDPERAGAEAPAQQERVPDPGAEGAELDPGPQGRPEAMVGSSGT 320 PAA D RA P Q R+PDP + GP G A +GSSGT Sbjct: 6 PAAAQYRSGSSEDARRADCRRPRGQTRIPDPS------NLGPSGSGVAALGSSGT 54
>ADDA_MOUSE (Q9QYC0) Alpha-adducin (Erythrocyte adducin alpha subunit)| Length = 735 Score = 32.7 bits (73), Expect = 1.1 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 9/44 (20%) Frame = -3 Query: 451 PDPERAGAEAPAQQERVPDPGAE---------GAELDPGPQGRP 347 PDP + AEA + P PGAE G+ +DPG G P Sbjct: 666 PDPTQPPAEADPEPASAPTPGAEEVASPATEEGSPMDPGSDGSP 709
>COL8_CAEEL (P18833) Cuticle collagen 8 precursor| Length = 282 Score = 32.3 bits (72), Expect = 1.4 Identities = 19/47 (40%), Positives = 21/47 (44%), Gaps = 1/47 (2%) Frame = -3 Query: 484 PAARAG-WGRLPPDPERAGAEAPAQQERVPDPGAEGAELDPGPQGRP 347 PA AG GR P G P +Q PGA G PGP+G P Sbjct: 154 PAGPAGDQGRHGPPGPTGGQGGPGEQGDAGRPGAAGCPGPPGPRGEP 200
>EXTL1_MOUSE (Q9JKV7) Exostosin-like 1 (EC 2.4.1.224)| (Glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase) (Exostosin-L) (Multiple exostosis-like protein) Length = 669 Score = 32.3 bits (72), Expect = 1.4 Identities = 16/55 (29%), Positives = 32/55 (58%), Gaps = 2/55 (3%) Frame = -1 Query: 681 GCIPVIIADDIVLPFADAIPWDEIGVFVAEDDVP--KLDTILTSIPMEVILRKQR 523 GCIPV+++ LPF++ I W + + +A++ +P L + +P V+ +Q+ Sbjct: 286 GCIPVLLSPRWELPFSEVIDWTKAAI-IADERLPLQVLAALREMLPSRVLALRQQ 339
>GP153_HUMAN (Q6NV75) Probable G-protein coupled receptor 153 (G-protein coupled| receptor PGR1) Length = 609 Score = 32.3 bits (72), Expect = 1.4 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 2/56 (3%) Frame = -3 Query: 460 RLPPDPERAGAEAP--AQQERVPDPGAEGAELDPGPQGRPEAMVGSSGTGIGAMWG 299 R PP P A AP A P P + A+ PGP+ + GS G+ A WG Sbjct: 516 RRPPGPFPAAPAAPDGADPGEAPTPPSS-AQRSPGPRPSAHSHAGSLRPGLSASWG 570
>RFIP3_HUMAN (O75154) Rab11 family-interacting protein 3 (Rab11-FIP3) (EF| hands-containing Rab-interacting protein) (Eferin) Length = 756 Score = 32.3 bits (72), Expect = 1.4 Identities = 23/68 (33%), Positives = 28/68 (41%), Gaps = 5/68 (7%) Frame = -3 Query: 490 AVPAARAGWGRLPPDPERAGAEAPAQQERVPDP-----GAEGAELDPGPQGRPEAMVGSS 326 A PA+ G PDPE G + P + P P GA DP G E G++ Sbjct: 4 APPASPPGSEPPGPDPEPGGPDGPGAAQLAPGPAELRLGAPVGGPDPQSPGLDEPAPGAA 63 Query: 325 GTGIGAMW 302 G GA W Sbjct: 64 ADG-GARW 70 Score = 30.8 bits (68), Expect = 4.0 Identities = 16/44 (36%), Positives = 18/44 (40%), Gaps = 9/44 (20%) Frame = -3 Query: 451 PDPERAGAEAPAQQERV---------PDPGAEGAELDPGPQGRP 347 PDP+ G + PA P PG EG DPGP P Sbjct: 48 PDPQSPGLDEPAPGAAADGGARWSAGPAPGLEGGPRDPGPSAPP 91
>CO4A4_BOVIN (Q29442) Collagen alpha-4(IV) chain (Fragment)| Length = 453 Score = 32.0 bits (71), Expect = 1.8 Identities = 18/44 (40%), Positives = 22/44 (50%) Frame = -3 Query: 454 PPDPERAGAEAPAQQERVPDPGAEGAELDPGPQGRPEAMVGSSG 323 PP P GA A + +PDPG G + PGP G P + G G Sbjct: 2 PPGPP--GAPGKALKGDIPDPGLPGDQGPPGPDG-PRGVPGPPG 42
>CO4A4_HUMAN (P53420) Collagen alpha-4(IV) chain precursor| Length = 1690 Score = 32.0 bits (71), Expect = 1.8 Identities = 18/44 (40%), Positives = 20/44 (45%) Frame = -3 Query: 454 PPDPERAGAEAPAQQERVPDPGAEGAELDPGPQGRPEAMVGSSG 323 PP P A AP +PDPG G + PGP G P G G Sbjct: 1240 PPGPAGATGRAPKD---IPDPGPPGDQGPPGPDG-PRGAPGPPG 1279
>VM01_VACCC (P20640) Ankyrin repeat protein M1| Length = 472 Score = 31.6 bits (70), Expect = 2.4 Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 1/70 (1%) Frame = +2 Query: 476 GCGNSMACFIDGFASSLCFRRITSIGMDVRMVSSFGTSSSATNTPISSHGMA-SAKGRTM 652 GCG +AC S F++I SIG + R+V FG + I H M+ + K T+ Sbjct: 167 GCGPLLACTDP---SERVFKKIMSIGFEARIVDKFGKNH------IHRHLMSDNPKASTI 217 Query: 653 SSAMITGMHP 682 S M G+ P Sbjct: 218 SWMMKLGISP 227
>VM01_VACCV (P14356) Ankyrin repeat protein M1| Length = 421 Score = 31.6 bits (70), Expect = 2.4 Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 1/70 (1%) Frame = +2 Query: 476 GCGNSMACFIDGFASSLCFRRITSIGMDVRMVSSFGTSSSATNTPISSHGMA-SAKGRTM 652 GCG +AC S F++I SIG + R+V FG + I H M+ + K T+ Sbjct: 116 GCGPLLACTDP---SERVFKKIMSIGFEARIVDKFGKNH------IHRHLMSDNPKASTI 166 Query: 653 SSAMITGMHP 682 S M G+ P Sbjct: 167 SWMMKLGISP 176
>ADDA_HUMAN (P35611) Alpha-adducin (Erythrocyte adducin alpha subunit)| Length = 737 Score = 31.6 bits (70), Expect = 2.4 Identities = 15/33 (45%), Positives = 16/33 (48%) Frame = -3 Query: 445 PERAGAEAPAQQERVPDPGAEGAELDPGPQGRP 347 PE A AP +E P EGA DPG G P Sbjct: 679 PEPAPDPAPVAEEAAPSAVEEGAAADPGSDGSP 711
>EXT1_MOUSE (P97464) Exostosin-1 (EC 2.4.1.224) (EC 2.4.1.225)| (Glucuronosyl-N-acetylglucosaminyl-proteoglycan/N- acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase) (Multiple exostoses protein 1 homolog) Length = 746 Score = 31.6 bits (70), Expect = 2.4 Identities = 14/48 (29%), Positives = 29/48 (60%) Frame = -1 Query: 678 CIPVIIADDIVLPFADAIPWDEIGVFVAEDDVPKLDTILTSIPMEVIL 535 C+PV++++ LPF++ I W++ V E + ++ + + SI + IL Sbjct: 355 CVPVMLSNGWELPFSEVINWNQAAVIGDERLLLQIPSTIRSIHQDKIL 402
>EXT1_HUMAN (Q16394) Exostosin-1 (EC 2.4.1.224) (EC 2.4.1.225)| (Glucuronosyl-N-acetylglucosaminyl-proteoglycan/N- acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase) (Putative tumor suppressor protein EXT1) (Multiple exostoses protein Length = 746 Score = 31.6 bits (70), Expect = 2.4 Identities = 14/48 (29%), Positives = 29/48 (60%) Frame = -1 Query: 678 CIPVIIADDIVLPFADAIPWDEIGVFVAEDDVPKLDTILTSIPMEVIL 535 C+PV++++ LPF++ I W++ V E + ++ + + SI + IL Sbjct: 355 CVPVMLSNGWELPFSEVINWNQAAVIGDERLLLQIPSTIRSIHQDKIL 402
>EXT1_CRIGR (Q9JK82) Exostosin-1 (EC 2.4.1.224) (EC 2.4.1.225) (Heparan sulfate| copolymerase) (Multiple exostoses protein 1 homolog) Length = 746 Score = 31.6 bits (70), Expect = 2.4 Identities = 14/48 (29%), Positives = 29/48 (60%) Frame = -1 Query: 678 CIPVIIADDIVLPFADAIPWDEIGVFVAEDDVPKLDTILTSIPMEVIL 535 C+PV++++ LPF++ I W++ V E + ++ + + SI + IL Sbjct: 355 CVPVMLSNGWELPFSEVINWNQAAVIGDERLLLQIPSTIRSIHQDKIL 402
>CO3A1_BOVIN (P04258) Collagen alpha-1(III) chain| Length = 1049 Score = 31.6 bits (70), Expect = 2.4 Identities = 21/47 (44%), Positives = 25/47 (53%), Gaps = 1/47 (2%) Frame = -3 Query: 460 RLPPDPERAGAEAPAQQERVPDPGAEGAELDPGPQG-RPEAMVGSSG 323 R PP P P Q+ +PG GA+ DPGP+G R EA GS G Sbjct: 257 RGPPGPPGTNG-VPGQRGAAGEPGKNGAKGDPGPRGERGEA--GSPG 300
>EXTL1_HUMAN (Q92935) Exostosin-like 1 (EC 2.4.1.224)| (Glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase) (Exostosin-L) (Multiple exostosis-like protein) Length = 676 Score = 31.2 bits (69), Expect = 3.1 Identities = 13/34 (38%), Positives = 23/34 (67%) Frame = -1 Query: 681 GCIPVIIADDIVLPFADAIPWDEIGVFVAEDDVP 580 GCIPV+++ LPF++ I W + + VA++ +P Sbjct: 293 GCIPVLLSPRWELPFSEVIDWTKAAI-VADERLP 325
>SIAH2_RAT (Q8R4T2) Ubiquitin ligase SIAH2 (EC 6.3.2.-) (Seven in absentia| homolog 2) (Siah-2) Length = 325 Score = 28.1 bits (61), Expect(2) = 3.3 Identities = 20/65 (30%), Positives = 25/65 (38%) Frame = -3 Query: 484 PAARAGWGRLPPDPERAGAEAPAQQERVPDPGAEGAELDPGPQGRPEAMVGSSGTGIGAM 305 P+A + PP P+ A +PA P A + PG P A SG G G Sbjct: 9 PSANKPCSKQPPPPQTPHAPSPA----APPAAATISAAGPGSSAVPAAAAVISGPGAGGG 64 Query: 304 WGRCS 290 G S Sbjct: 65 AGPVS 69 Score = 21.6 bits (44), Expect(2) = 3.3 Identities = 9/21 (42%), Positives = 11/21 (52%) Frame = -1 Query: 171 GHLPCITWFRFCFCCPSARTA 109 GHL C + CCP+ R A Sbjct: 98 GHLVCNQCRQKLSCCPTCRGA 118
>CLC14_HUMAN (Q86T13) C-type lectin domain family 14 member A precursor| (Epidermal growth factor receptor 5) (EGFR-5) Length = 490 Score = 30.8 bits (68), Expect = 4.0 Identities = 21/55 (38%), Positives = 25/55 (45%), Gaps = 3/55 (5%) Frame = -3 Query: 427 EAPAQQERVPDPGAEGAELDPGPQGRPEAMVGSSG---TGIGAMWGRCSVRTRCE 272 E+P+ Q R G G E DP P A +GSS T G G C +R R E Sbjct: 427 ESPSSQPRKESMGPPGLESDPEP-----AALGSSSAHCTNNGVKVGDCDLRDRAE 476
>G3OX1_ARATH (Q39103) Gibberellin 3-beta-dioxygenase 1 (EC 1.14.11.15)| (Gibberellin 3 beta-hydroxylase 1) (GA 3-oxidase 1) (AtGA3ox1) Length = 358 Score = 30.8 bits (68), Expect = 4.0 Identities = 14/41 (34%), Positives = 23/41 (56%) Frame = -1 Query: 465 GDAFHQILNGLARKLPHSKSVYLTPGQKALNWTQGPKGDLK 343 GD FH + NGL + + H V T + ++ + GP+ D+K Sbjct: 273 GDLFHILSNGLFKSVLHRARVNQTRARLSVAFLWGPQSDIK 313
>COL39_CAEEL (Q09455) Cuticle collagen 39 precursor| Length = 323 Score = 30.4 bits (67), Expect = 5.2 Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 4/50 (8%) Frame = -3 Query: 454 PPDPERAGAEAPAQQERVP----DPGAEGAELDPGPQGRPEAMVGSSGTG 317 P P AG ++ QQE + PG GA PGPQG P G G G Sbjct: 116 PGQPGVAGPKSHEQQECIKCPAGSPGPAGAPGAPGPQG-PNGQPGHPGQG 164
>EXT3_DROME (Q9XZ08) Exostosin-3 (EC 2.4.1.223) (Protein brother of tout-velu)| Length = 972 Score = 30.4 bits (67), Expect = 5.2 Identities = 15/55 (27%), Positives = 33/55 (60%), Gaps = 3/55 (5%) Frame = -1 Query: 681 GCIPVII-ADDIVLPFADAIPWDEIGVFVAEDDVPKLDTILTSIPME--VILRKQ 526 G +PVI+ AD++ LP+A+ + W + + + + +L +L ++ ++LR+Q Sbjct: 508 GAVPVILGADELRLPYAETVDWRRTALLLPKARITELHFLLRAVQDADLLLLRRQ 562
>EXT1C_BRARE (Q5IGR6) Exostosin-1c (EC 2.4.1.224) (EC 2.4.1.225)| (Glucuronosyl-N-acetylglucosaminyl-proteoglycan/N- acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase 1c) (Multiple exostoses protein 1 homolog c) Length = 737 Score = 30.4 bits (67), Expect = 5.2 Identities = 16/46 (34%), Positives = 26/46 (56%) Frame = -1 Query: 678 CIPVIIADDIVLPFADAIPWDEIGVFVAEDDVPKLDTILTSIPMEV 541 CIPV++++ LPF+D I W++ V E D + +L +P V Sbjct: 347 CIPVLLSNGWELPFSDVIQWNQA---VVEGD----ERLLLQVPSTV 385
>EXT1B_BRARE (Q5IGR7) Exostosin-1b (EC 2.4.1.224) (EC 2.4.1.225)| (Glucuronosyl-N-acetylglucosaminyl-proteoglycan/N- acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase 1b) (Multiple exostoses protein 1 homolog b) Length = 741 Score = 30.4 bits (67), Expect = 5.2 Identities = 14/48 (29%), Positives = 28/48 (58%) Frame = -1 Query: 678 CIPVIIADDIVLPFADAIPWDEIGVFVAEDDVPKLDTILTSIPMEVIL 535 C+PV++++ LPF++ I W+ V E + ++ + + SI + IL Sbjct: 350 CVPVMLSNGWELPFSEVIDWNTAAVIGDERLLLQIPSTVRSIHQDKIL 397
>CSKI2_HUMAN (Q8WXE0) Caskin-2| Length = 1202 Score = 30.4 bits (67), Expect = 5.2 Identities = 16/43 (37%), Positives = 22/43 (51%) Frame = -3 Query: 442 ERAGAEAPAQQERVPDPGAEGAELDPGPQGRPEAMVGSSGTGI 314 E AG P P ++ E +PGP+G P + GSSG G+ Sbjct: 909 EPAGPSEPPGPPAPAGPASDTEEEEPGPEGTPPSR-GSSGEGL 950
>CO4A1_CAEEL (P17139) Collagen alpha-1(IV) chain precursor| Length = 1759 Score = 30.4 bits (67), Expect = 5.2 Identities = 16/38 (42%), Positives = 20/38 (52%) Frame = -3 Query: 394 PGAEGAELDPGPQGRPEAMVGSSGTGIGAMWGRCSVRT 281 PG +GA+ DPGP G P G+ + GR VRT Sbjct: 191 PGLKGAKGDPGPYGLP------GFPGVSGLKGRMGVRT 222
>BAB1_DROME (Q9W0K7) Protein bric-a-brac 1| Length = 977 Score = 30.4 bits (67), Expect = 5.2 Identities = 22/62 (35%), Positives = 23/62 (37%) Frame = -3 Query: 484 PAARAGWGRLPPDPERAGAEAPAQQERVPDPGAEGAELDPGPQGRPEAMVGSSGTGIGAM 305 PA+ AG R P P A A A P P AE P P VG G G G Sbjct: 423 PASPAGDSRFPLGPAAAMAAARELSGLGPGPSAEPRLPPPPPHHHGGGGVGGGGVGGGGA 482 Query: 304 WG 299 G Sbjct: 483 GG 484
>URE1_SULTO (Q972W0) Urease alpha subunit (EC 3.5.1.5) (Urea amidohydrolase| alpha subunit) Length = 557 Score = 30.4 bits (67), Expect = 5.2 Identities = 22/70 (31%), Positives = 32/70 (45%) Frame = -1 Query: 603 FVAEDDVPKLDTILTSIPMEVILRKQRLLANPSMKQAMLFPQPAQAGDAFHQILNGLARK 424 F A D V L I+ + V + R L MK + P+ D + +NG+ K Sbjct: 484 FSATDGVENLSKIVRRRVLPV--KNTRHLTKKDMKYNDILPKIEVNPDTYEVKINGIVPK 541 Query: 423 LPHSKSVYLT 394 +P SKS+ LT Sbjct: 542 VPPSKSLPLT 551
>CO3A1_CHICK (P12105) Collagen alpha-1(III) chain precursor (Fragments)| Length = 1262 Score = 30.4 bits (67), Expect = 5.2 Identities = 24/64 (37%), Positives = 27/64 (42%), Gaps = 4/64 (6%) Frame = -3 Query: 484 PAARAGWGRLPPDPERAGAEAPAQQERVP----DPGAEGAELDPGPQGRPEAMVGSSGTG 317 P AG+ P AG PA P +PG +G PGPQG P GS G G Sbjct: 336 PPGTAGFPGSPGFKGEAGPPGPAGASGNPGERGEPGPQGQAGPPGPQG-PPGRAGSPG-G 393 Query: 316 IGAM 305 G M Sbjct: 394 KGEM 397
>FA20C_HUMAN (Q8IXL6) Protein FAM20C precursor| Length = 570 Score = 30.0 bits (66), Expect = 6.9 Identities = 19/46 (41%), Positives = 22/46 (47%) Frame = -3 Query: 490 AVPAARAGWGRLPPDPERAGAEAPAQQERVPDPGAEGAELDPGPQG 353 A PA RA GR DP PA + + DPG +E PGP G Sbjct: 100 AEPAERALRGR---DPGALRPHDPAHRPLLRDPGPRRSESPPGPGG 142
>SYNJ1_MOUSE (Q8CHC4) Synaptojanin-1 (EC 3.1.3.36) (Synaptic| inositol-1,4,5-trisphosphate 5-phosphatase 1) Length = 1574 Score = 30.0 bits (66), Expect = 6.9 Identities = 16/38 (42%), Positives = 20/38 (52%) Frame = +3 Query: 222 TFDDSNGLHGWAYSSVLSHLVLTEHRPHMAPMPVPLLP 335 +FDD W+ + +S VL RP P PVPLLP Sbjct: 1516 SFDDD-----WSKGASVSFCVLPARRPPPPPPPVPLLP 1548
>COCA1_RAT (P70560) Collagen alpha-1(XII) chain (Fragment)| Length = 317 Score = 30.0 bits (66), Expect = 6.9 Identities = 15/37 (40%), Positives = 19/37 (51%) Frame = -3 Query: 433 GAEAPAQQERVPDPGAEGAELDPGPQGRPEAMVGSSG 323 G P + R PG+ G+ PGP GRP G+SG Sbjct: 200 GPPGPQGESRTGPPGSTGSRGPPGPPGRP----GNSG 232
>COCA1_MOUSE (Q60847) Collagen alpha-1(XII) chain precursor| Length = 3119 Score = 30.0 bits (66), Expect = 6.9 Identities = 15/37 (40%), Positives = 19/37 (51%) Frame = -3 Query: 433 GAEAPAQQERVPDPGAEGAELDPGPQGRPEAMVGSSG 323 G P + R PG+ G+ PGP GRP G+SG Sbjct: 3002 GPPGPQGESRTGPPGSTGSRGPPGPPGRP----GNSG 3034
>IF2_STRAW (Q82K53) Translation initiation factor IF-2| Length = 1046 Score = 30.0 bits (66), Expect = 6.9 Identities = 17/37 (45%), Positives = 18/37 (48%), Gaps = 1/37 (2%) Frame = -3 Query: 454 PPDPERAGAEAPAQQER-VPDPGAEGAELDPGPQGRP 347 PP P+ A AE PA ER P A G P P RP Sbjct: 84 PPAPKPAAAERPAAAERPAAAPAAPGPRPGPKPAPRP 120
>VID21_CRYNE (Q5KL22) Chromatin modification-related protein VID21| Length = 985 Score = 30.0 bits (66), Expect = 6.9 Identities = 23/63 (36%), Positives = 26/63 (41%), Gaps = 6/63 (9%) Frame = -3 Query: 478 ARAGWGRLPP-----DPERAGAEAPAQQERVPDPGAEGAELDPGPQG-RPEAMVGSSGTG 317 A+A GR P P + G +P Q R PD AEGA GP G P Sbjct: 773 AQAQQGRAPSMGGNLQPPQLGVSSPFAQSRTPDLPAEGA----GPSGINPTPSPAMQAAA 828 Query: 316 IGA 308 IGA Sbjct: 829 IGA 831
>IER5_HUMAN (Q5VY09) Immediate early response gene 5 protein| Length = 327 Score = 30.0 bits (66), Expect = 6.9 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%) Frame = -3 Query: 484 PAARAGWGRLPPDPERAG-AEAPAQQERVP 398 PAARA W P PER+ ++AP + VP Sbjct: 89 PAARASWPETEPQPERSSVSDAPRVGDEVP 118
>COCA1_HUMAN (Q99715) Collagen alpha-1(XII) chain precursor| Length = 3063 Score = 30.0 bits (66), Expect = 6.9 Identities = 15/37 (40%), Positives = 19/37 (51%) Frame = -3 Query: 433 GAEAPAQQERVPDPGAEGAELDPGPQGRPEAMVGSSG 323 G P + R PG+ G+ PGP GRP G+SG Sbjct: 3001 GPPGPQGESRTGPPGSTGSRGPPGPPGRP----GNSG 3033
>SYNJ1_RAT (Q62910) Synaptojanin-1 (EC 3.1.3.36) (Synaptic| inositol-1,4,5-trisphosphate 5-phosphatase 1) Length = 1574 Score = 29.6 bits (65), Expect = 9.0 Identities = 16/38 (42%), Positives = 20/38 (52%) Frame = +3 Query: 222 TFDDSNGLHGWAYSSVLSHLVLTEHRPHMAPMPVPLLP 335 +FDD W+ + +S VL RP P PVPLLP Sbjct: 1516 SFDDD-----WSKGTNVSFCVLPARRPPPPPPPVPLLP 1548
>RELA_STRAT (O85709) GTP pyrophosphokinase (EC 2.7.6.5) (ATP:GTP| 3'-pyrophosphotransferase) (ppGpp synthetase I) ((P)ppGpp synthetase) Length = 841 Score = 29.6 bits (65), Expect = 9.0 Identities = 29/94 (30%), Positives = 42/94 (44%), Gaps = 5/94 (5%) Frame = -3 Query: 490 AVPAARAGWGRLPPDPER-AGAEAPAQQERVPDPGAEGAELDPGPQ----GRPEAMVGSS 326 A PAA A G P + +R A A+ PA++ R P P P P+ G+P A G S Sbjct: 21 AEPAAHAQDGGGPVEHDRSAPADKPAERTR-PKPAPPERPRPPPPRARAAGQPAARSGGS 79 Query: 325 GTGIGAMWGRCSVRTRCERTDE*AQPCKPLLSSN 224 + A R V+ R T +P ++ +N Sbjct: 80 SNRVRARLARLGVQ-RANLTHPVLEPLLRIVRAN 112
>ZAR1_MOUSE (Q80SU3) Zygote arrest 1 (Oocyte-specific maternal effect factor)| Length = 361 Score = 29.6 bits (65), Expect = 9.0 Identities = 21/57 (36%), Positives = 25/57 (43%), Gaps = 3/57 (5%) Frame = -3 Query: 481 AARAGWGRLPPDPERAGAEAPAQQE---RVPDPGAEGAELDPGPQGRPEAMVGSSGT 320 A +AGW + PP PE + A Q E P P AE A+ DPG P T Sbjct: 194 AGQAGWEQQPP-PEDRNSVAAMQSEPGSEEPCPAAEMAQ-DPGDSDAPRDQASPQST 248
>COAA1_BOVIN (P23206) Collagen alpha-1(X) chain precursor| Length = 674 Score = 29.6 bits (65), Expect = 9.0 Identities = 24/75 (32%), Positives = 31/75 (41%), Gaps = 1/75 (1%) Frame = -3 Query: 460 RLPPDPERAGAEAPAQQERVPDPGAEGAELDPGPQGRPEAMVGSSGT-GIGAMWGRCSVR 284 R PP P G PA PG +G +PGP+G P G GT G+ + G+ Sbjct: 138 RGPPGPP--GIPGPAGISVPGKPGPQGPTGEPGPRGFP----GEKGTSGVPGLNGQKGEM 191 Query: 283 TRCERTDE*AQPCKP 239 C PC+P Sbjct: 192 GHC-------TPCRP 199
>CO1A1_MOUSE (P11087) Collagen alpha-1(I) chain precursor| Length = 1453 Score = 29.6 bits (65), Expect = 9.0 Identities = 21/49 (42%), Positives = 25/49 (51%), Gaps = 6/49 (12%) Frame = -3 Query: 451 PDPERAGAEAPA--QQERVP----DPGAEGAELDPGPQGRPEAMVGSSG 323 P+P+R E A +E V D G EG + DPGPQG P VG G Sbjct: 73 PNPQRREGECCAFCPEEYVSPNSEDVGVEGPKGDPGPQG-PRGPVGPPG 120
>RYR1_PIG (P16960) Ryanodine receptor 1 (Skeletal muscle-type ryanodine| receptor) (RyR1) (RYR-1) (Skeletal muscle calcium release channel) Length = 5035 Score = 29.6 bits (65), Expect = 9.0 Identities = 20/56 (35%), Positives = 28/56 (50%) Frame = -3 Query: 451 PDPERAGAEAPAQQERVPDPGAEGAELDPGPQGRPEAMVGSSGTGIGAMWGRCSVR 284 P+PE+A AE ++E VP P E + P P+ G SG G+ WG V+ Sbjct: 4493 PEPEKADAE-NGEKEEVPKPPPEPPKKTAPPPPPPKKEEGGSG-GL-EFWGELEVQ 4545
>CO3A1_HUMAN (P02461) Collagen alpha-1(III) chain precursor| Length = 1466 Score = 29.6 bits (65), Expect = 9.0 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 1/46 (2%) Frame = -3 Query: 487 VPAARAGWG-RLPPDPERAGAEAPAQQERVPDPGAEGAELDPGPQG 353 +P A G R PP P A AP + +PG GA+ +PGP+G Sbjct: 403 IPGAPGLMGARGPPGPAGANG-APGLRGGAGEPGKNGAKGEPGPRG 447
>YXWK_CAEEL (Q21184) Putative cuticle collagen F55C10.3| Length = 266 Score = 29.6 bits (65), Expect = 9.0 Identities = 17/46 (36%), Positives = 23/46 (50%) Frame = -3 Query: 484 PAARAGWGRLPPDPERAGAEAPAQQERVPDPGAEGAELDPGPQGRP 347 P+ G P P + G +AP++ PGA G + PGPQG P Sbjct: 155 PSGPNGNPGAPGAPGQPGQDAPSEP---ITPGAPGPQGTPGPQGPP 197
>COCA1_BOVIN (P25508) Collagen alpha-1(XII) chain (Fragments)| Length = 86 Score = 29.6 bits (65), Expect = 9.0 Identities = 15/37 (40%), Positives = 18/37 (48%) Frame = -3 Query: 433 GAEAPAQQERVPDPGAEGAELDPGPQGRPEAMVGSSG 323 G P + R PG+ G+ PGP GRP G SG Sbjct: 52 GPPGPQGESRTGPPGSTGSRGPPGPPGRP----GDSG 84 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 87,040,004 Number of Sequences: 219361 Number of extensions: 1874116 Number of successful extensions: 8805 Number of sequences better than 10.0: 61 Number of HSP's better than 10.0 without gapping: 6659 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 8540 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6769072002 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
