ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags8n05 |
|---|---|
| Clone Library Name | barley_pub |
>EVI1_HUMAN (Q03112) Ecotropic virus integration 1 site protein| Length = 1051 Score = 31.6 bits (70), Expect = 1.1 Identities = 18/48 (37%), Positives = 24/48 (50%) Frame = +3 Query: 306 PASSVPAERKKKTGSAADSQGTQKTPSAANPGHGGKTRSHVRSKPPSD 449 PA+S GS + + GT+ T N GGK S+V S+P SD Sbjct: 577 PATSQDQPLDLSMGSRSRASGTKLTEPRKNHVFGGKKGSNVESRPASD 624
>SF3B1_MOUSE (Q99NB9) Splicing factor 3B subunit 1 (Spliceosome-associated| protein 155) (SAP 155) (SF3b155) (Pre-mRNA-splicing factor SF3b 155 kDa subunit) Length = 1304 Score = 30.8 bits (68), Expect = 1.9 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 9/61 (14%) Frame = +3 Query: 306 PASSVPAERKKKTGSAADSQGTQKTPSAANPGHGGKTRSHVRSK----PPSD-----HGS 458 P S + T + A + G TP A PGHGG T S +++ P ++ HGS Sbjct: 249 PGSKIWDPTPSHTPAGAATPGRGDTPGHATPGHGGATSSARKNRWDETPKTERDTPGHGS 308 Query: 459 G 461 G Sbjct: 309 G 309
>SF3B1_HUMAN (O75533) Splicing factor 3B subunit 1 (Spliceosome-associated| protein 155) (SAP 155) (SF3b155) (Pre-mRNA-splicing factor SF3b 155 kDa subunit) Length = 1304 Score = 30.8 bits (68), Expect = 1.9 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 9/61 (14%) Frame = +3 Query: 306 PASSVPAERKKKTGSAADSQGTQKTPSAANPGHGGKTRSHVRSK----PPSD-----HGS 458 P S + T + A + G TP A PGHGG T S +++ P ++ HGS Sbjct: 249 PGSKIWDPTPSHTPAGAATPGRGDTPGHATPGHGGATSSARKNRWDETPKTERDTPGHGS 308 Query: 459 G 461 G Sbjct: 309 G 309
>PHLPP_RAT (Q9WTR8) PH domain leucine-rich repeat protein phosphatase (EC| 3.1.3.16) (Pleckstrin homology domain-containing family E protein 1) (Suprachiasmatic nucleus circadian oscillatory protein) Length = 1696 Score = 30.8 bits (68), Expect = 1.9 Identities = 18/58 (31%), Positives = 27/58 (46%) Frame = +3 Query: 306 PASSVPAERKKKTGSAADSQGTQKTPSAANPGHGGKTRSHVRSKPPSDHGSGRDVQSE 479 PA++ PA+R AD G + P+AA GG++ V S G+G + E Sbjct: 3 PAAAAPAQR------LADPTGEDRAPAAAAAAEGGRSPDSVLSAAAPSGGNGGAAREE 54
>NDR1A_XENLA (Q641F2) Protein NDRG1-A (xNDRG1-A)| Length = 396 Score = 30.8 bits (68), Expect = 1.9 Identities = 14/41 (34%), Positives = 23/41 (56%) Frame = +3 Query: 303 IPASSVPAERKKKTGSAADSQGTQKTPSAANPGHGGKTRSH 425 +PA+S+ + +TGSAA S S ++ G ++RSH Sbjct: 316 MPAASMTRLMRSRTGSAASSSSQDGNRSRSHTNEGSRSRSH 356
>NDRG1_XENTR (Q66IG4) Protein NDRG1| Length = 395 Score = 30.8 bits (68), Expect = 1.9 Identities = 14/41 (34%), Positives = 23/41 (56%) Frame = +3 Query: 303 IPASSVPAERKKKTGSAADSQGTQKTPSAANPGHGGKTRSH 425 +PA+S+ + +TGSAA S S ++ G ++RSH Sbjct: 315 MPAASMTRLMRSRTGSAASSSSQDGNRSRSHTNEGSRSRSH 355
>SLAP1_CLOTM (Q06852) Cell surface glycoprotein 1 precursor (Outer layer protein| B) (S-layer protein 1) Length = 1664 Score = 30.8 bits (68), Expect = 1.9 Identities = 15/56 (26%), Positives = 26/56 (46%) Frame = +3 Query: 303 IPASSVPAERKKKTGSAADSQGTQKTPSAANPGHGGKTRSHVRSKPPSDHGSGRDV 470 +P S P K T + A ++ + TPS GG+ R+++R P R++ Sbjct: 1414 VPTSPTPTPTSKPTSTPAPTEIEEPTPSDVPGAIGGEHRAYLRGYPDGSFRPERNI 1469
>NFIX_MESAU (P13623) Nuclear factor 1 X-type (Nuclear factor 1/X) (NF1-X)| (NFI-X) (NF-I/X) (CCAAT-box-binding transcription factor) (CTF) (TGGCA-binding protein) Length = 441 Score = 30.4 bits (67), Expect = 2.5 Identities = 19/67 (28%), Positives = 31/67 (46%) Frame = +3 Query: 201 PNHVLSKPCSQGVVRRILIVSPESELERGQIYFLIPASSVPAERKKKTGSAADSQGTQKT 380 P VLS P +G +RRI + ++ R + +I +P E + D + K+ Sbjct: 101 PCCVLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLE-------STDGERLYKS 153 Query: 381 PSAANPG 401 P +NPG Sbjct: 154 PQCSNPG 160
>NFIX_MOUSE (P70257) Nuclear factor 1 X-type (Nuclear factor 1/X) (NF1-X)| (NFI-X) (NF-I/X) (CCAAT-box-binding transcription factor) (CTF) (TGGCA-binding protein) Length = 488 Score = 30.4 bits (67), Expect = 2.5 Identities = 19/67 (28%), Positives = 31/67 (46%) Frame = +3 Query: 201 PNHVLSKPCSQGVVRRILIVSPESELERGQIYFLIPASSVPAERKKKTGSAADSQGTQKT 380 P VLS P +G +RRI + ++ R + +I +P E + D + K+ Sbjct: 101 PCCVLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLE-------STDGERLYKS 153 Query: 381 PSAANPG 401 P +NPG Sbjct: 154 PQCSNPG 160
>NFIX_HUMAN (Q14938) Nuclear factor 1 X-type (Nuclear factor 1/X) (NF1-X)| (NFI-X) (NF-I/X) (CCAAT-box-binding transcription factor) (CTF) (TGGCA-binding protein) Length = 502 Score = 30.4 bits (67), Expect = 2.5 Identities = 19/67 (28%), Positives = 31/67 (46%) Frame = +3 Query: 201 PNHVLSKPCSQGVVRRILIVSPESELERGQIYFLIPASSVPAERKKKTGSAADSQGTQKT 380 P VLS P +G +RRI + ++ R + +I +P E + D + K+ Sbjct: 101 PCCVLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLE-------STDGERLYKS 153 Query: 381 PSAANPG 401 P +NPG Sbjct: 154 PQCSNPG 160
>CALX_ASPFU (Q6Q487) Calnexin homolog precursor| Length = 563 Score = 30.0 bits (66), Expect = 3.3 Identities = 14/43 (32%), Positives = 24/43 (55%) Frame = +3 Query: 306 PASSVPAERKKKTGSAADSQGTQKTPSAANPGHGGKTRSHVRS 434 PA + A++ K+ SAA + ++ SAA+ G T+ + RS Sbjct: 518 PAPAAAAKKGKEAASAAKEKASEAVSSAADTAKGAATKRNTRS 560
>TIF1G_MOUSE (Q99PP7) Transcription intermediary factor 1-gamma (TIF1-gamma)| (Tripartite motif protein 33) Length = 1142 Score = 29.6 bits (65), Expect = 4.3 Identities = 12/27 (44%), Positives = 16/27 (59%) Frame = +3 Query: 381 PSAANPGHGGKTRSHVRSKPPSDHGSG 461 PSA +PG G + SH +PPS +G Sbjct: 738 PSALSPGSSGLSNSHTPVRPPSTSSTG 764
>TIF1G_HUMAN (Q9UPN9) Transcription intermediary factor 1-gamma (TIF1-gamma)| (RET-fused gene 7 protein) (Rfg7 protein) (Tripartite motif protein 33) Length = 1127 Score = 29.6 bits (65), Expect = 4.3 Identities = 12/27 (44%), Positives = 16/27 (59%) Frame = +3 Query: 381 PSAANPGHGGKTRSHVRSKPPSDHGSG 461 PSA +PG G + SH +PPS +G Sbjct: 723 PSALSPGSSGLSNSHTPVRPPSTSSTG 749
>NFIX_CHICK (Q90932) Nuclear factor 1 X-type (Nuclear factor 1/X) (NF1-X)| (NFI-X) (NF-I/X) (CCAAT-box-binding transcription factor) (CTF) (TGGCA-binding protein) Length = 431 Score = 29.6 bits (65), Expect = 4.3 Identities = 20/67 (29%), Positives = 30/67 (44%) Frame = +3 Query: 201 PNHVLSKPCSQGVVRRILIVSPESELERGQIYFLIPASSVPAERKKKTGSAADSQGTQKT 380 P VLS P +G +RRI + ++ R + +I VP E + D + K Sbjct: 101 PCCVLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGVPLE-------STDGERLAKA 153 Query: 381 PSAANPG 401 P A+PG Sbjct: 154 PQCASPG 160
>NFIA_CHICK (P17923) Nuclear factor 1 A-type (Nuclear factor 1/A) (NF1-A)| (NFI-A) (NF-I/A) (CCAAT-box-binding transcription factor) (CTF) (TGGCA-binding protein) Length = 522 Score = 29.3 bits (64), Expect = 5.6 Identities = 19/67 (28%), Positives = 31/67 (46%) Frame = +3 Query: 201 PNHVLSKPCSQGVVRRILIVSPESELERGQIYFLIPASSVPAERKKKTGSAADSQGTQKT 380 P VLS P +G +RRI + ++ R + +I +P E + D + K+ Sbjct: 101 PCCVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLE-------STDGERLVKS 153 Query: 381 PSAANPG 401 P +NPG Sbjct: 154 PQCSNPG 160
>DHN1_MAIZE (P12950) Dehydrin DHN1 (M3) (RAB-17 protein)| Length = 168 Score = 29.3 bits (64), Expect = 5.6 Identities = 22/99 (22%), Positives = 38/99 (38%) Frame = +3 Query: 141 SGRVEEYGRPVAAGEILSANPNHVLSKPCSQGVVRRILIVSPESELERGQIYFLIPASSV 320 +G V++YG PV E + H G + + + GQ Sbjct: 14 TGHVDQYGNPVGGVEHGTGGMRHGTGTTGGMGQLGE----HGGAGMGGGQFQ-------- 61 Query: 321 PAERKKKTGSAADSQGTQKTPSAANPGHGGKTRSHVRSK 437 PA + KTG G+ + S+ + G GG+ + ++ K Sbjct: 62 PAREEHKTGGILHRSGSSSSSSSEDDGMGGRRKKGIKEK 100
>NFIA_RAT (P09414) Nuclear factor 1 A-type (Nuclear factor 1/A) (NF1-A)| (NFI-A) (NF-I/A) (CCAAT-box-binding transcription factor) (CTF) (TGGCA-binding protein) Length = 509 Score = 29.3 bits (64), Expect = 5.6 Identities = 19/67 (28%), Positives = 31/67 (46%) Frame = +3 Query: 201 PNHVLSKPCSQGVVRRILIVSPESELERGQIYFLIPASSVPAERKKKTGSAADSQGTQKT 380 P VLS P +G +RRI + ++ R + +I +P E + D + K+ Sbjct: 101 PCCVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLE-------STDGERLVKS 153 Query: 381 PSAANPG 401 P +NPG Sbjct: 154 PQCSNPG 160
>NFIA_MOUSE (Q02780) Nuclear factor 1 A-type (Nuclear factor 1/A) (NF1-A)| (NFI-A) (NF-I/A) (CCAAT-box-binding transcription factor) (CTF) (TGGCA-binding protein) Length = 532 Score = 29.3 bits (64), Expect = 5.6 Identities = 19/67 (28%), Positives = 31/67 (46%) Frame = +3 Query: 201 PNHVLSKPCSQGVVRRILIVSPESELERGQIYFLIPASSVPAERKKKTGSAADSQGTQKT 380 P VLS P +G +RRI + ++ R + +I +P E + D + K+ Sbjct: 124 PCCVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLE-------STDGERLVKS 176 Query: 381 PSAANPG 401 P +NPG Sbjct: 177 PQCSNPG 183
>NFIA_HUMAN (Q12857) Nuclear factor 1 A-type (Nuclear factor 1/A) (NF1-A)| (NFI-A) (NF-I/A) (CCAAT-box-binding transcription factor) (CTF) (TGGCA-binding protein) Length = 509 Score = 29.3 bits (64), Expect = 5.6 Identities = 19/67 (28%), Positives = 31/67 (46%) Frame = +3 Query: 201 PNHVLSKPCSQGVVRRILIVSPESELERGQIYFLIPASSVPAERKKKTGSAADSQGTQKT 380 P VLS P +G +RRI + ++ R + +I +P E + D + K+ Sbjct: 101 PCCVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLE-------STDGERLVKS 153 Query: 381 PSAANPG 401 P +NPG Sbjct: 154 PQCSNPG 160
>NEUM_CHICK (P35001) Neuromodulin (Axonal membrane protein GAP-43)| (Growth-associated protein 43) Length = 246 Score = 29.3 bits (64), Expect = 5.6 Identities = 16/29 (55%), Positives = 17/29 (58%) Frame = +3 Query: 312 SSVPAERKKKTGSAADSQGTQKTPSAANP 398 SSVP E KK G AAD+ Q P AA P Sbjct: 108 SSVPTEEKKGNG-AADTGSEQPAPQAATP 135
>SH2P1_XENTR (Q6DEU9) SH2 domain-binding protein 1| Length = 1172 Score = 29.3 bits (64), Expect = 5.6 Identities = 14/49 (28%), Positives = 22/49 (44%) Frame = +3 Query: 321 PAERKKKTGSAADSQGTQKTPSAANPGHGGKTRSHVRSKPPSDHGSGRD 467 P ++K+K G + G ++ G GG+ + R K P G G D Sbjct: 935 PRKKKRKKGGGSSGSGGEQG-EGGEEGEGGEKKKKKRRKRPQKGGDGSD 982
>SYD1_SYNAS (Q2LPW5) Aspartyl-tRNA synthetase 1 (EC 6.1.1.12) (Aspartate--tRNA| ligase 1) (AspRS 1) Length = 723 Score = 28.9 bits (63), Expect = 7.3 Identities = 24/75 (32%), Positives = 29/75 (38%), Gaps = 2/75 (2%) Frame = -3 Query: 290 LAALQLGLRGDDEYPPHDALRARLAQHVVWVSGEDLAGGDRXXXXXXXXXXXXXXDQVQR 111 LA L L GD + P DA + H+ WVS +A G+R QV Sbjct: 610 LAELGLLNLGDKDVLPGDAEKEDRIDHLSWVSRIGIAEGERPVMESILAQAEELAAQVGD 669 Query: 110 AAG--EHASQAAPQA 72 AG E AP A Sbjct: 670 LAGNEEPVRSVAPVA 684
>Y3289_BORBR (Q7WHB9) UPF0261 protein BB3289| Length = 402 Score = 28.5 bits (62), Expect = 9.6 Identities = 31/124 (25%), Positives = 45/124 (36%) Frame = +3 Query: 60 RMGNSLRCCLACVLPCGALDLIRIVHLSGRVEEYGRPVAAGEILSANPNHVLSKPCSQGV 239 R G R + V CGALD++ G ++ + NP L + +Q Sbjct: 260 RFGAIARSGVPYVGSCGALDMVNF----GALDTVPAACRERLLYPHNPQVTLMRTTAQEN 315 Query: 240 VRRILIVSPESELERGQIYFLIPASSVPAERKKKTGSAADSQGTQKTPSAANPGHGGKTR 419 R+ ++ GQ+ FLIP V SA D+ G AA+ Sbjct: 316 ARQGAWIAERLNRCEGQVRFLIPEGGV---------SALDAPGQAFYDEAADAALFQALY 366 Query: 420 SHVR 431 HVR Sbjct: 367 DHVR 370
>Y1817_BORPA (Q7W9E3) UPF0261 protein BPP1817| Length = 402 Score = 28.5 bits (62), Expect = 9.6 Identities = 31/124 (25%), Positives = 45/124 (36%) Frame = +3 Query: 60 RMGNSLRCCLACVLPCGALDLIRIVHLSGRVEEYGRPVAAGEILSANPNHVLSKPCSQGV 239 R G R + V CGALD++ G ++ + NP L + +Q Sbjct: 260 RFGAIARSGVPYVGSCGALDMVNF----GALDTVPAACRERLLYPHNPQVTLMRTTAQEN 315 Query: 240 VRRILIVSPESELERGQIYFLIPASSVPAERKKKTGSAADSQGTQKTPSAANPGHGGKTR 419 R+ ++ GQ+ FLIP V SA D+ G AA+ Sbjct: 316 ARQGAWIAERLNRCEGQVRFLIPEGGV---------SALDAPGQAFYDEAADAALFQALY 366 Query: 420 SHVR 431 HVR Sbjct: 367 DHVR 370
>Y1203_BORPE (Q7VYV4) UPF0261 protein BP1203| Length = 402 Score = 28.5 bits (62), Expect = 9.6 Identities = 31/124 (25%), Positives = 45/124 (36%) Frame = +3 Query: 60 RMGNSLRCCLACVLPCGALDLIRIVHLSGRVEEYGRPVAAGEILSANPNHVLSKPCSQGV 239 R G R + V CGALD++ G ++ + NP L + +Q Sbjct: 260 RFGAIARSGVPYVGSCGALDMVNF----GALDTVPAACRERLLYPHNPQVTLMRTTAQEN 315 Query: 240 VRRILIVSPESELERGQIYFLIPASSVPAERKKKTGSAADSQGTQKTPSAANPGHGGKTR 419 R+ ++ GQ+ FLIP V SA D+ G AA+ Sbjct: 316 ARQGAWIAERLNRCEGQVRFLIPEGGV---------SALDAPGQAFHDEAADAALFQALY 366 Query: 420 SHVR 431 HVR Sbjct: 367 DHVR 370
>REF2P_DROSI (Q24629) Protein ref(2)P (Refractory to sigma P)| Length = 599 Score = 28.5 bits (62), Expect = 9.6 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 1/54 (1%) Frame = +3 Query: 321 PAERKKKTGSAADSQGTQKT-PSAANPGHGGKTRSHVRSKPPSDHGSGRDVQSE 479 P E+ + +G +A S +Q PSAA + S +S PS GS D Q E Sbjct: 372 PEEQSQSSGQSAASSASQSAVPSAAPSANQSNVPSANQSATPSISGSISDAQLE 425
>RGA7_SCHPO (O94466) Probable Rho-GTPase-activating protein 7| Length = 695 Score = 28.5 bits (62), Expect = 9.6 Identities = 15/46 (32%), Positives = 24/46 (52%) Frame = +3 Query: 306 PASSVPAERKKKTGSAADSQGTQKTPSAANPGHGGKTRSHVRSKPP 443 PAS+ P K +A D+ G+ + S++NP S+ +KPP Sbjct: 399 PASASPLASTLKPSTANDTNGSSSS-SSSNPRTSSPLASNAENKPP 443
>SFRS4_MOUSE (Q8VE97) Splicing factor, arginine/serine-rich 4| Length = 489 Score = 28.5 bits (62), Expect = 9.6 Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 2/42 (4%) Frame = +3 Query: 315 SVPAERKKKTGSAADSQGTQKTP--SAANPGHGGKTRSHVRS 434 +VPAE + ++ SA+ ++ K+P SA+ ++RSH RS Sbjct: 448 NVPAESRSRSKSASKTRSRSKSPSRSASRSPSRSRSRSHSRS 489 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 52,872,063 Number of Sequences: 219361 Number of extensions: 1066908 Number of successful extensions: 4182 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 3993 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4177 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3246866728 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
