ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bags8n03 |
|---|---|
| Clone Library Name | barley_pub |
>ZAR1_MOUSE (Q80SU3) Zygote arrest 1 (Oocyte-specific maternal effect factor)| Length = 361 Score = 33.1 bits (74), Expect = 0.50 Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 10/79 (12%) Frame = +2 Query: 86 TSRPSSCATPPRRATFLPSS--------SGCQASPEPRSG-CGSRPPKNGS*SPAAW-SL 235 +SR ++ PRR + S +GC+ASP+ RSG C R SP +W ++ Sbjct: 72 SSRDAAVQVNPRRDASVQCSLGRRTLQPAGCRASPDARSGSCQPRGHAGAGRSPRSWQTV 131 Query: 236 HPTSPFTRASLIGALLFAG 292 P S T L +L AG Sbjct: 132 APFSSVTFCGLSSSLEVAG 150
>THIC1_METMA (Q8PY39) Thiamine biosynthesis protein thiC 1| Length = 428 Score = 32.3 bits (72), Expect = 0.86 Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 10/51 (19%) Frame = -2 Query: 333 LVQITEHHALV----------QIHPAKSRAPIREARVNGEVGWRDHAAGLQ 211 LV+I + H +V H A RA I+E +N E+G R H AGLQ Sbjct: 210 LVEILKEHEVVLSTGNGMRAGATHDATDRAQIQELIINTELGQRAHDAGLQ 260
>LTK_HUMAN (P29376) Leukocyte tyrosine kinase receptor precursor (EC 2.7.10.1)| (Protein tyrosine kinase 1) Length = 864 Score = 32.0 bits (71), Expect = 1.1 Identities = 23/74 (31%), Positives = 33/74 (44%) Frame = +2 Query: 68 MLWPWGTSRPSSCATPPRRATFLPSSSGCQASPEPRSGCGSRPPKNGS*SPAAWSLHPTS 247 ++W +G + C++P + TFL SS ASP P+ S PP L P S Sbjct: 8 LVW-FGAAGAILCSSPGSQETFLRSSPLPLASPSPQDPKVSAPPS---------ILEPAS 57 Query: 248 PFTRASLIGALLFA 289 P G+ LF+ Sbjct: 58 PLNSPGTEGSWLFS 71
>SP96_DICDI (P14328) Spore coat protein SP96| Length = 600 Score = 31.2 bits (69), Expect = 1.9 Identities = 28/92 (30%), Positives = 43/92 (46%) Frame = +2 Query: 83 GTSRPSSCATPPRRATFLPSSSGCQASPEPRSGCGSRPPKNGS*SPAAWSLHPTSPFTRA 262 G+S SS A+ A+ PSSS +SP + S S SP++ + +SP + A Sbjct: 442 GSSAVSSSASGSSAASSSPSSSAASSSPSSSAASSSPSSSAASSSPSSSASSSSSPSSSA 501 Query: 263 SLIGALLFAGWICTKAWCSVICTKTASSASLS 358 S A + + A S + +ASS+S S Sbjct: 502 SSSSAPSSSA-SSSSAPSSSASSSSASSSSAS 532
>CD5R2_MOUSE (O35926) Cyclin-dependent kinase 5 activator 2 precursor (CDK5| activator 2) (Cyclin-dependent kinase 5 regulatory subunit 2) (P39) (P39I) Length = 369 Score = 30.8 bits (68), Expect = 2.5 Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 3/42 (7%) Frame = +2 Query: 83 GTSRPSSC---ATPPRRATFLPSSSGCQASPEPRSGCGSRPP 199 GT++P + P AT P S G A+P P SG G PP Sbjct: 116 GTAKPLAVPVPTVPTTAATCEPPSGGSAAAPPPGSGGGKPPP 157
>CO5A2_HUMAN (P05997) Collagen alpha-2(V) chain precursor| Length = 1496 Score = 30.8 bits (68), Expect = 2.5 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%) Frame = -2 Query: 189 LPQPERGSGEAWHPDELGK-NVALRGGVAHDDGRLVPHGHNIVGGDRGDQGEGVP 28 LP P+ +G+ P E G V + G DG++ P+G G RG++GE P Sbjct: 613 LPGPKGSNGDPGKPGEAGNPGVPGQRGAPGKDGKVGPYGPPGPPGLRGERGEQGP 667
>TCGAP_HUMAN (O14559) TC10/CDC42 GTPase-activating protein (Sorting nexin 26)| Length = 1287 Score = 30.8 bits (68), Expect = 2.5 Identities = 19/58 (32%), Positives = 22/58 (37%) Frame = +2 Query: 110 TPPRRATFLPSSSGCQASPEPRSGCGSRPPKNGS*SPAAWSLHPTSPFTRASLIGALL 283 TPP + S + EP GS PP N P AW P R G+LL Sbjct: 923 TPPASQSPFHRSLSLEVGGEPLGTSGSGPPPNSLAHPGAWVPGPPPYLPRQQSDGSLL 980
>ALGE3_AZOVI (Q44496) Poly(beta-D-mannuronate) C5 epimerase 3 (EC 5.1.3.-)| (Mannuronan epimerase 3) Length = 1839 Score = 30.4 bits (67), Expect = 3.3 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 14/63 (22%) Frame = -2 Query: 240 GWRDHAAGLQDPFFGGRLPQPERG--------------SGEAWHPDELGKNVALRGGVAH 103 G RD+ +G D +F G +P + SG + P E N+ +R VAH Sbjct: 951 GNRDNTSGKVDGWFNGYIPGQDGADRNVTLERVEIREMSGYGFDPHEQTINLTIRDSVAH 1010 Query: 102 DDG 94 D+G Sbjct: 1011 DNG 1013
>ALGE1_AZOVI (Q44494) Poly(beta-D-mannuronate) C5 epimerase 1 (EC 5.1.3.-)| (Mannuronan epimerase 1) Length = 1403 Score = 30.4 bits (67), Expect = 3.3 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 14/63 (22%) Frame = -2 Query: 240 GWRDHAAGLQDPFFGGRLPQPERG--------------SGEAWHPDELGKNVALRGGVAH 103 G RD+ +G D +F G +P + SG + P E N+ +R VAH Sbjct: 953 GNRDNTSGKVDGWFNGYIPGQDGADRNVTIERVEIREMSGYGFDPHEQTINLTIRDSVAH 1012 Query: 102 DDG 94 D+G Sbjct: 1013 DNG 1015
>ALGE5_AZOVI (Q44492) Poly(beta-D-mannuronate) C5 epimerase 5 (EC 5.1.3.-)| (Mannuronan epimerase 5) Length = 997 Score = 30.4 bits (67), Expect = 3.3 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 14/63 (22%) Frame = -2 Query: 240 GWRDHAAGLQDPFFGGRLPQPERG--------------SGEAWHPDELGKNVALRGGVAH 103 G RD+ +G D +F G +P + SG + P E N+ +R VAH Sbjct: 109 GNRDNTSGKVDGWFNGYIPGEDGADRDVTLERVEIREMSGYGFDPHEQTINLTIRDSVAH 168 Query: 102 DDG 94 D+G Sbjct: 169 DNG 171
>ALGE2_AZOVI (Q44495) Poly(beta-D-mannuronate) C5 epimerase 2 (EC 5.1.3.-)| (Mannuronan epimerase 2) Length = 997 Score = 30.4 bits (67), Expect = 3.3 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 14/63 (22%) Frame = -2 Query: 240 GWRDHAAGLQDPFFGGRLPQPERG--------------SGEAWHPDELGKNVALRGGVAH 103 G RD+ +G D +F G +P + SG + P E N+ +R VAH Sbjct: 109 GNRDNTSGKVDGWFNGYIPGEDGADRDVTLERVEIREMSGYGFDPHEQTINLTIRDSVAH 168 Query: 102 DDG 94 D+G Sbjct: 169 DNG 171
>ALGE4_AZOVI (Q44493) Poly(beta-D-mannuronate) C5 epimerase 4 (EC 5.1.3.-)| (Mannuronan epimerase 4) Length = 553 Score = 30.4 bits (67), Expect = 3.3 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 14/63 (22%) Frame = -2 Query: 240 GWRDHAAGLQDPFFGGRLP--------------QPERGSGEAWHPDELGKNVALRGGVAH 103 G RD+ +G D +F G +P + SG + P E N+ +R VAH Sbjct: 109 GNRDNTSGKVDGWFNGYIPGGDGADRDVTIERVEVREMSGYGFDPHEQTINLTIRDSVAH 168 Query: 102 DDG 94 D+G Sbjct: 169 DNG 171
>POLG_BVDVS (Q01499) Genome polyprotein [Contains: N-terminal protease (EC| 3.4.22.-) (N-pro) (Autoprotease p20); Capsid protein C; E(rns) glycoprotein (gp44/48); Envelope glycoprotein E1 (gp33); Envelope glycoprotein E2 (gp55); p7; Nonstructural protein 2 Length = 3898 Score = 30.4 bits (67), Expect = 3.3 Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 3/42 (7%) Frame = -3 Query: 287 QKVEPR*EKHE*TEKLG---GGTMQPGFKTHSLVDDSHSQSA 171 +KVEP + ++ + K+G G PG +TH+LV++ H++ A Sbjct: 2979 EKVEPDTDNNQSSVKIGLDEGNYPGPGVQTHTLVEEIHNKDA 3020
>FPG_BORPA (Q7W185) Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23)| (Fapy-DNA glycosylase) (DNA-(apurinic or apyrimidinic site) lyase mutM) (EC 4.2.99.18) (AP lyase mutM) Length = 274 Score = 30.0 bits (66), Expect = 4.3 Identities = 21/50 (42%), Positives = 23/50 (46%), Gaps = 2/50 (4%) Frame = -2 Query: 279 RAPIREA-RVNGEVGWR-DHAAGLQDPFFGGRLPQPERGSGEAWHPDELG 136 R P +EA R +G V W DHA RL P R WHPDE G Sbjct: 80 RVPEQEAPRKHGHVDWVFDHAVL--------RLHDPRRFGAVLWHPDEAG 121
>UBQL4_HUMAN (Q9NRR5) Ubiquilin-4 (Ataxin-1 ubiquitin-like-interacting protein| A1U) Length = 601 Score = 29.6 bits (65), Expect = 5.6 Identities = 23/69 (33%), Positives = 34/69 (49%) Frame = +2 Query: 86 TSRPSSCATPPRRATFLPSSSGCQASPEPRSGCGSRPPKNGS*SPAAWSLHPTSPFTRAS 265 ++ P+S ATP + PS+SG +S +G GSR G SP A P++ + S Sbjct: 109 STTPASPATPAQ-----PSTSGSASSD---AGSGSRRSSGGGPSPGAGEGSPSATASILS 160 Query: 266 LIGALLFAG 292 G +L G Sbjct: 161 GFGGILGLG 169
>WNK4_RAT (Q7TPK6) Serine/threonine-protein kinase WNK4 (EC 2.7.11.1) (Protein| kinase with no lysine 4) (Protein kinase, lysine-deficient 4) Length = 1222 Score = 29.6 bits (65), Expect = 5.6 Identities = 20/57 (35%), Positives = 25/57 (43%) Frame = +2 Query: 77 PWGTSRPSSCATPPRRATFLPSSSGCQASPEPRSGCGSRPPKNGS*SPAAWSLHPTS 247 P+ S+ SS P ++ LPSSSG P P + P S S LHP S Sbjct: 831 PYPFSQVSSNPCPQAPSSLLPSSSGASQVPFPSPSLPTSSPLPFSPSYPQVPLHPAS 887
>RNPA_DEIRA (Q9RSH3) Ribonuclease P protein component (EC 3.1.26.5) (RNaseP| protein) (RNase P protein) (Protein C5) Length = 166 Score = 29.6 bits (65), Expect = 5.6 Identities = 13/29 (44%), Positives = 15/29 (51%) Frame = -2 Query: 234 RDHAAGLQDPFFGGRLPQPERGSGEAWHP 148 R H A ++DP F RL GE WHP Sbjct: 11 RAHGAAVRDPLFTLRLTDYRPRYGERWHP 39
>YSCN_YERPS (P40291) Probable ATP synthase yscN (EC 3.6.3.14) (YOPS secretion| ATPase) Length = 439 Score = 29.3 bits (64), Expect = 7.3 Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 9/73 (12%) Frame = -2 Query: 339 AVLVQITEHHALV----QIHPAKSRAPIREARVNGEVGWRDHAAG-----LQDPFFGGRL 187 A ++ +H AL+ +++ S + +VG +H G L PF GG L Sbjct: 61 AEVIGFAQHQALLIPLGEMYGISSNTEVSPTGTMHQVGVGEHLLGQVLDGLGQPFDGGHL 120 Query: 186 PQPERGSGEAWHP 148 P+P AW+P Sbjct: 121 PEP-----AAWYP 128
>YSCN_YEREN (P40290) Probable ATP synthase yscN (EC 3.6.3.14) (YOPS secretion| ATPase) Length = 439 Score = 29.3 bits (64), Expect = 7.3 Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 9/73 (12%) Frame = -2 Query: 339 AVLVQITEHHALV----QIHPAKSRAPIREARVNGEVGWRDHAAG-----LQDPFFGGRL 187 A ++ +H AL+ +++ S + +VG +H G L PF GG L Sbjct: 61 AEVIGFAQHQALLIPLGEMYGISSNTEVSPTGTMHQVGVGEHLLGQVLDGLGQPFDGGHL 120 Query: 186 PQPERGSGEAWHP 148 P+P AW+P Sbjct: 121 PEP-----AAWYP 128
>PRB4M_HUMAN (P10161) Basic salivary proline-rich protein 4 allele M (Salivary| proline-rich protein Po) (Parotid o protein) [Contains: Peptide P-D] (Fragment) Length = 238 Score = 29.3 bits (64), Expect = 7.3 Identities = 18/59 (30%), Positives = 22/59 (37%), Gaps = 1/59 (1%) Frame = +2 Query: 77 PWGTSRPSSCATPPRRATFLPSSSGCQAS-PEPRSGCGSRPPKNGS*SPAAWSLHPTSP 250 P G ++P PP + P G Q+ P P G RPP G HP P Sbjct: 11 PQGGNQPQRPPPPPGKPQGPPPQGGNQSQGPPPHPGKPERPPPQGGNQSQGPPPHPGKP 69
>TAU_CAPHI (O02828) Microtubule-associated protein tau (Neurofibrillary tangle| protein) (Paired helical filament-tau) (PHF-tau) Length = 402 Score = 29.3 bits (64), Expect = 7.3 Identities = 18/50 (36%), Positives = 25/50 (50%) Frame = -3 Query: 233 GTMQPGFKTHSLVDDSHSQSAAREKPGIQTSSART*PSAVASHMTTADWS 84 G M+PG K L + S E+PG +TS A++ P+A A D S Sbjct: 25 GDMEPGLKESPLQTPADDGS---EEPGSETSDAKSTPTAEAEEAGIGDTS 71
>PSD_HALSA (Q9HN46) Phosphatidylserine decarboxylase proenzyme (EC 4.1.1.65)| [Contains: Phosphatidylserine decarboxylase alpha chain; Phosphatidylserine decarboxylase beta chain] Length = 225 Score = 29.3 bits (64), Expect = 7.3 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 2/52 (3%) Frame = +2 Query: 296 ICTKAWCSVIC--TKTASSASLSCP*DFQLIMPPIIQTASALRSSVPWPVFG 445 I T AW + ASS P ++ +PP + +AL +S PW V G Sbjct: 11 ISTPAWTDTLTRLAPDASSVLARGPWTWKYALPPAVVGVAALAASSPWGVVG 62
>KIFC3_HUMAN (Q9BVG8) Kinesin-like protein KIFC3| Length = 694 Score = 29.3 bits (64), Expect = 7.3 Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%) Frame = +1 Query: 154 PGFSRAALWLWESSTK-EWVLKPGCMVPPPNFSVHS 258 PG RA L W S EW +P C P P+ HS Sbjct: 633 PGLRRAELGSWSSQEHLEW--EPACQTPQPSARAHS 666
>RPB1_SCHPO (P36594) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)| (RNA polymerase II subunit 1) Length = 1752 Score = 29.3 bits (64), Expect = 7.3 Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 4/60 (6%) Frame = +2 Query: 83 GTSRPSSCATPP----RRATFLPSSSGCQASPEPRSGCGSRPPKNGS*SPAAWSLHPTSP 250 G + P S A P ++ PSS G SP S P + S SP + S PTSP Sbjct: 1538 GYTSPFSSAMSPGYGLTSPSYSPSSPGYSTSPAYMPSSPSYSPTSPSYSPTSPSYSPTSP 1597
>DPO2_ECOLI (P21189) DNA polymerase II (EC 2.7.7.7) (Pol II)| Length = 782 Score = 29.3 bits (64), Expect = 7.3 Identities = 11/27 (40%), Positives = 17/27 (62%) Frame = -2 Query: 306 LVQIHPAKSRAPIREARVNGEVGWRDH 226 ++Q H + R P+R R N E+ WR+H Sbjct: 231 MLQKHAERYRLPLRLGRDNSELEWREH 257
>INAR1_MOUSE (P33896) Interferon-alpha/beta receptor alpha chain precursor| (IFN-alpha-REC) Length = 590 Score = 29.3 bits (64), Expect = 7.3 Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 4/90 (4%) Frame = +1 Query: 52 PIPSDDVMAMGDQSAVVMCDATAEGYVLAELVWMPGFSRAALWLWESSTKEWVLKPGCMV 231 P+P + + +S V+ D A VL W+PG+S+++ S + +W P C Sbjct: 230 PVPGNLQVDAQGKSYVLKWDYIASADVLFRAQWLPGYSKSSS---GSHSDKWKPIPTCAN 286 Query: 232 PPPNFSVHSCFS----YRGSTFCWVDLHQG 309 + H FS Y G+ F V +G Sbjct: 287 VQ---TTHCVFSQDTVYTGTFFLHVQASEG 313 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 78,312,526 Number of Sequences: 219361 Number of extensions: 1807379 Number of successful extensions: 6243 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 5743 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6225 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4200495993 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
