>ATPQ_ARATH (Q9FT52) ATP synthase D chain, mitochondrial (EC 3.6.3.14)|
          Length = 167

 Score =  233 bits (594), Expect = 2e-61
 Identities = 111/150 (74%), Positives = 124/150 (82%)
 Frame = +1

Query: 49  IDWDGMAKMLVSEEARKEFANLRRTFEDVNHQLQTKFSQEPQPIDWEYYRKGIGSKVVDM 228
           IDWDGMAK+LV++EAR+EF+NLRR F++VN QLQTKFSQEP+PIDW+YYRKGIG+ +VD 
Sbjct: 18  IDWDGMAKVLVTDEARREFSNLRRAFDEVNTQLQTKFSQEPEPIDWDYYRKGIGAGIVDK 77

Query: 229 YKEAYDSIEIPKYVDTVTPRYKPKFDALLVELKEAEKTSLKESXXXXXXXXXXXXXXXXX 408
           YKEAYDSIEIPKYVD VTP YKPKFDALLVELKEAE+ SLKES                 
Sbjct: 78  YKEAYDSIEIPKYVDKVTPEYKPKFDALLVELKEAEQKSLKESERLEKEIADVQEISKKL 137

Query: 409 STMTADEYFAKHPELKKKFDDEMRNDYWGY 498
           STMTADEYF KHPELKKKFDDE+RND WGY
Sbjct: 138 STMTADEYFEKHPELKKKFDDEIRNDNWGY 167

>ATP5H_RAT (P31399) ATP synthase D chain, mitochondrial (EC 3.6.3.14)|
          Length = 160

 Score = 43.5 bits (101), Expect = 4e-04
 Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
 Frame = +1

Query: 49  IDWDGMAKMLVSEEARKEFANLRRTFEDVNHQLQTKFSQEPQPIDWEYYRKGIGSK-VVD 225
           IDW    +++   +  K   N  +++ +  H      S++P  IDW YYR  +    +VD
Sbjct: 10  IDWVSFVEIMPQNQ--KAIGNALKSWNETFHTRLASLSEKPPAIDWAYYRANVDKPGLVD 67

Query: 226 MYKEAYDSIEIPKYVDTVT 282
            +K  Y++++IP   D  T
Sbjct: 68  DFKNKYNALKIPVPEDKYT 86

>ATP5H_MOUSE (Q9DCX2) ATP synthase D chain, mitochondrial (EC 3.6.3.14)|
          Length = 160

 Score = 42.7 bits (99), Expect = 6e-04
 Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
 Frame = +1

Query: 49  IDWDGMAKMLVSEEARKEFANLRRTFEDVNHQLQTKFSQEPQPIDWEYYRKGIGSK-VVD 225
           IDW    +++   +  K   N  +++ +  H      S++P  IDW YYR  +    +VD
Sbjct: 10  IDWVSFVEVMPQNQ--KAIGNALKSWNETFHARLASLSEKPPAIDWAYYRANVAKPGLVD 67

Query: 226 MYKEAYDSIEIPKYVDTVT 282
            +++ Y++++IP   D  T
Sbjct: 68  DFEKKYNALKIPVPEDKYT 86

>ATP5H_HUMAN (O75947) ATP synthase D chain, mitochondrial (EC 3.6.3.14)|
          Length = 160

 Score = 34.3 bits (77), Expect = 0.21
 Identities = 17/79 (21%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
 Frame = +1

Query: 49  IDWDGMAKMLVSEEARKEFANLRRTFEDVNHQLQTKFSQEPQPIDWEYYRKGIG-SKVVD 225
           IDW   A+++   +  K  A+  +++ +          + P  IDW YY+  +  + +VD
Sbjct: 10  IDWVAFAEIIPQNQ--KAIASSLKSWNETLTSRLAALPENPPAIDWAYYKANVAKAGLVD 67

Query: 226 MYKEAYDSIEIPKYVDTVT 282
            +++ ++++++P   D  T
Sbjct: 68  DFEKKFNALKVPVPEDKYT 86

>ATP5H_BOVIN (P13620) ATP synthase D chain, mitochondrial (EC 3.6.3.14)|
          Length = 160

 Score = 33.9 bits (76), Expect = 0.28
 Identities = 17/79 (21%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
 Frame = +1

Query: 49  IDWDGMAKMLVSEEARKEFANLRRTFEDVNHQLQTKFSQEPQPIDWEYYRKGIG-SKVVD 225
           IDW    +++   +  K  AN  +++ +          ++P  IDW YY+  +  + +VD
Sbjct: 10  IDWVAFGEIIPRNQ--KAVANSLKSWNETLTSRLATLPEKPPAIDWAYYKANVAKAGLVD 67

Query: 226 MYKEAYDSIEIPKYVDTVT 282
            +++ ++++++P   D  T
Sbjct: 68  DFEKKFNALKVPIPEDKYT 86

>D7_AEDAE (P18153) D7 protein precursor (Allergen Aed a 2)|
          Length = 321

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
 Frame = +1

Query: 85  EEARKEFANLRRTFEDVNHQLQTKFSQEPQPI---DWEYYRKGIGSKVVDMYKEAYDSIE 255
           EE +++F  + +  + +   L    S+EP       W YY+  + S V D +KEA+D  E
Sbjct: 227 EEVKRDFKLVNKDTKALEKVLNDCKSKEPSNAKEKSWHYYKCLVESSVKDDFKEAFDYRE 286

Query: 256 I 258
           +
Sbjct: 287 V 287

>CABL2_HUMAN (Q9BTV7) CDK5 and ABL1 enzyme substrate 2 (Interactor with CDK3 2)|
           (Ik3-2)
          Length = 478

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +3

Query: 90  GPEGVRQPPPHLRGRQPPAPDQVLPGT 170
           GP G + PPP    R+PPAP    P T
Sbjct: 65  GPGGEKPPPPPAEAREPPAPPPPEPPT 91

>YTDC1_RAT (Q9QY02) YTH domain-containing protein 1 (Putative splicing factor|
           YT521) (RA301-binding protein)
          Length = 738

 Score = 30.4 bits (67), Expect = 3.1
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 324 EGGREDISEGIREDREGDC*NEGDEEKDQHND 419
           EGG ED+ E    D +GD   E DE+ ++  D
Sbjct: 202 EGGEEDVEEDEEVDEDGDDDEEVDEDAEEEED 233

>RS24_PYRFU (Q8U442) 30S ribosomal protein S24e|
          Length = 99

 Score = 30.4 bits (67), Expect = 3.1
 Identities = 23/70 (32%), Positives = 32/70 (45%)
 Frame = +1

Query: 127 EDVNHQLQTKFSQEPQPIDWEYYRKGIGSKVVDMYKEAYDSIEIPKYVDTVTPRYKPKFD 306
           +DV  +L       P+    +Y R   GS +   Y +AYDS E   Y++   P Y    D
Sbjct: 34  KDVKGKLVAMLDLNPETTVIQYIRSYFGSYISKGYAKAYDSKERMLYIE---PEYILIRD 90

Query: 307 ALLVELKEAE 336
             L+E KE E
Sbjct: 91  G-LIEKKEGE 99

>AATF_RAT (Q9QYW0) Protein AATF (Apoptosis-antagonizing transcription factor)|
          Length = 523

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 15/37 (40%), Positives = 25/37 (67%)
 Frame = +3

Query: 324 EGGREDISEGIREDREGDC*NEGDEEKDQHNDSRRVL 434
           EG  E+ISE + ED EG+  +E D E+D++++   V+
Sbjct: 139 EGLEEEISEDVEEDLEGE--DEEDREEDRNSEDDGVV 173

>SF3A2_HUMAN (Q15428) Splicing factor 3A subunit 2 (Spliceosome-associated|
           protein 62) (SAP 62) (SF3a66)
          Length = 464

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 81  LRGGPEGVRQPPPHLRGRQPPAP 149
           L  GP GV++PPP L    PP P
Sbjct: 223 LPAGPPGVKRPPPPLMNGLPPRP 245

>WSP1_SCHPO (O36027) Wiskott-Aldrich syndrome homolog protein 1|
          Length = 574

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
 Frame = +3

Query: 84  RGGPEGVRQPPPHLRGR---QPPAPDQVLPGTTA 176
           R  P   RQPPP    R    PPAP   +PG +A
Sbjct: 367 RSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSA 400

>SF3A2_MOUSE (Q62203) Splicing factor 3A subunit 2 (Spliceosome-associated|
           protein 62) (SAP 62) (SF3a66)
          Length = 475

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 81  LRGGPEGVRQPPPHLRGRQPPAP 149
           L  GP GV++PPP L    PP P
Sbjct: 213 LPAGPPGVKRPPPPLMNGLPPRP 235

>FOXM1_MOUSE (O08696) Forkhead box protein M1 (Forkhead homolog 16)|
           (Winged-helix transcription factor Trident)
          Length = 760

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 111 PPPHLRGRQPPAPDQVLPGTTAN 179
           PPPH+ G +P +P+  +P  +AN
Sbjct: 690 PPPHVEGPKPGSPELQIPSLSAN 712

>SMYD5_XENLA (Q6GPQ4) SET and MYND domain-containing protein 5|
          Length = 421

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 6/96 (6%)
 Frame = +1

Query: 76  LVSEEARKEFANLRRTFEDVNHQLQTKFSQEPQPIDWEYYR-----KGIGSKVVDMYKEA 240
           L+ E+ + +   LRR F D  ++ +      P+     +       +GIG+  +  +  A
Sbjct: 207 LLGEKFKGQLDQLRRLFVDALYEERMSRWFTPEGFRSLFALVGTNGQGIGTSSLSQWVHA 266

Query: 241 YDSIEIPKYVDTVTPRYKPKFDALLVEL-KEAEKTS 345
            D++E+P       PR + K DAL+ +L K+ EK +
Sbjct: 267 CDALELP-------PRDREKLDALIDQLYKDIEKVT 295

>OSA_DROME (Q8IN94) Trithorax group protein osa (Protein eyelid)|
          Length = 2716

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = +3

Query: 90   GPEGVRQPPPHLRGRQPPAPDQVLPG 167
            G +G +QPPP + G  PPAP Q  PG
Sbjct: 1300 GQQG-QQPPPSVGGGPPPAPQQHGPG 1324

>IFA1_CAEEL (P90901) Intermediate filament protein ifa-1 (Intermediate filament|
           protein A1) (IF-A1) (Cel IF A1)
          Length = 575

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 18/68 (26%), Positives = 36/68 (52%)
 Frame = +1

Query: 49  IDWDGMAKMLVSEEARKEFANLRRTFEDVNHQLQTKFSQEPQPIDWEYYRKGIGSKVVDM 228
           ID+    + L+     +E   LRR  ++   +LQT  S++  P + E+++  + S + D+
Sbjct: 229 IDYQNQVQTLL-----EEIDFLRRVHDNEIKELQTLASRDTTPENREFFKNELSSAIRDI 283

Query: 229 YKEAYDSI 252
            +E YD +
Sbjct: 284 -REEYDQV 290

>MUTS2_CLOAB (Q97GM6) MutS2 protein|
          Length = 788

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 9/96 (9%)
 Frame = +1

Query: 79  VSEEARKEFANLRRTFEDVNHQLQTKFSQEPQPIDWEYYRKGIGSKVVDMYKEAYDSI-- 252
           + EEARK  +     FED+   LQT+  +  + +    + K    K  + Y+E   SI  
Sbjct: 501 IIEEARKGISKDTLEFEDLIQNLQTRSVKAEENLRKAEFLKEQAEKFKEKYEEKVSSITE 560

Query: 253 -------EIPKYVDTVTPRYKPKFDALLVELKEAEK 339
                  E  +    +    K + D +L +++E E+
Sbjct: 561 TREKALHEGRREAKKIIEEAKSEADKILKDMREMER 596

>GPS2_HUMAN (Q13227) G protein pathway suppressor 2 (GPS2 protein)|
          Length = 327

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = +3

Query: 63  HGEDARLRGGPEGVRQPPPHLRGRQPP-APDQVLPGTTA 176
           HG+     GG  G  QPPPH    QP  +P Q L   +A
Sbjct: 177 HGQFQGSPGGAYGTAQPPPHYGPTQPAYSPSQQLRAPSA 215

>FHOD1_MOUSE (Q6P9Q4) FH1/FH2 domain-containing protein (Formin homolog|
           overexpressed in spleen) (FHOS) (Formin homology 2
           domain-containing protein 1)
          Length = 1196

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = +3

Query: 81  LRGGPEGVRQPPPHLRGRQPPAPDQVLP 164
           L GGP     PPP + G  PP P   LP
Sbjct: 582 LSGGPPPPPPPPPPITGSCPPPPPPPLP 609

>MUTS2_CLOPE (Q8XJ80) MutS2 protein|
          Length = 786

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 24/99 (24%), Positives = 41/99 (41%), Gaps = 9/99 (9%)
 Frame = +1

Query: 79  VSEEARKEFANLRRTFEDVNHQLQTKFSQEPQPIDWEYYRKGIGSKVVDMYKEAYDSIEI 258
           V EEA+K  +     FED+   LQ K  +           +    K  + YKE ++ IE 
Sbjct: 501 VIEEAKKVISTESLQFEDLIQSLQEKSIKAENDAREAAILRNDAEKYKNRYKEKFERIES 560

Query: 259 PK---YVDT------VTPRYKPKFDALLVELKEAEKTSL 348
            +   Y D       +    K + DA+L  +++ E+  +
Sbjct: 561 VRDNVYADARREAKQILDSAKEEADAILKNMRDLERMGI 599

>PUAC_STRMI (P13249) Puromycin N-acetyltransferase (EC 2.3.-.-)|
          Length = 199

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +1

Query: 187 EYYRKGIGSKVVDMYKEAYDSIEIPKYVDTVTPRYKPKFDAL 312
           ++  KG+GS VV    EA +   +P +++T  PR  P ++ L
Sbjct: 133 DHQGKGLGSAVVLPGVEAAERAGVPAFLETSAPRNLPFYERL 174

>BFR2_ASPFU (Q4WMI1) Protein bfr2|
          Length = 565

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 11/47 (23%)
 Frame = +3

Query: 324 EGGREDISEGIRED-----------REGDC*NEGDEEKDQHNDSRRV 431
           EG  +D  +G  ED           +EGD   + DE++D+  D+R+V
Sbjct: 165 EGSEDDSEDGFDEDDMSGEFSSDDDQEGDEDGDDDEDEDEETDNRKV 211


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,948,710
Number of Sequences: 219361
Number of extensions: 990916
Number of successful extensions: 4329
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 3988
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4312
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 3970331829
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)