ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags8m22
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK061852.1| Oryza sativa (japonica cultivar-group) cDNA clon... 188 7e-45
2gb|AY104267.1| Zea mays PCO085704 mRNA sequence 161 2e-36
3gb|AC108761.2| Oryza sativa (japonica cultivar-group) chromosome... 96 7e-17
4emb|X98487.1|LMPGKCG L.mexicana PGKC gene for glycosomal phospho... 44 0.25
5emb|X98486.1|LMPGKBC L.mexicana PGKB gene for cytosolic phosphog... 44 0.25
6gb|AF339905.1|AF339905S1 Leishmania major phosphoglycerate kinas... 44 0.25
7gb|AC105336.14| Mus musculus chromosome 3, clone RP24-277J22, co... 40 3.8
8gb|AC127701.2| Homo sapiens BAC clone RP11-79F18 from UL, comple... 40 3.8
9gb|AC019340.6| Homo sapiens BAC clone RP11-715L17 from 7, comple... 40 3.8
10ref|XM_317666.2| Anopheles gambiae str. PEST ENSANGP00000018515 ... 40 3.8

>dbj|AK061852.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-F09, full
           insert sequence
          Length = 1415

 Score =  188 bits (95), Expect = 7e-45
 Identities = 212/251 (84%)
 Strand = Plus / Plus

                                                                       
Query: 41  cgccttgagaatttggatggcaaaatggacgagcaagtggaagtctccaaacaaatccgg 100
           ||||| || ||||| ||||| |||||||| ||||||||||| |||||||||   ||  | 
Sbjct: 616 cgcctggaaaatttagatgggaaaatggatgagcaagtggaggtctccaaaattattaga 675

                                                                       
Query: 101 aatgaggtcgttgatgttaaaactgatctgtctcaaattggctttgacgttgaagcaatt 160
           || |||||   |||||| |||  |||||||||||||||||| |||||  ||| |||||| 
Sbjct: 676 aacgaggtgaatgatgtcaaagatgatctgtctcaaattggatttgatattgcagcaatc 735

                                                                       
Query: 161 caacagatggtagccggattggaagagaagatcgagctgcttgacaacaagcaggatgcg 220
           ||||||||||| || |||||||||| |||||||||| ||||||| || || |||||||| 
Sbjct: 736 caacagatggttgctggattggaagggaagatcgagttgcttgataataaacaggatgca 795

                                                                       
Query: 221 gctaatgctggtatatggtacctctgccgaatggcaggaggtataaaagagggaataaat 280
            ||||||||||| ||||||||||||||| ||| || |||||| ||||||| |||||||||
Sbjct: 796 actaatgctggtgtatggtacctctgccaaatagctggaggtctaaaagatggaataaat 855

                      
Query: 281 gccaagttttt 291
           |||||||||||
Sbjct: 856 gccaagttttt 866



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>gb|AY104267.1| Zea mays PCO085704 mRNA sequence
          Length = 1009

 Score =  161 bits (81), Expect = 2e-36
 Identities = 237/289 (82%)
 Strand = Plus / Plus

                                                                       
Query: 5   tcagcgctagcagcaacgaaaagacatttaacaaaacgccttgagaatttggatggcaaa 64
           ||||| ||||| ||||| ||||||||| ||||  |||| |||||||||||||||||||||
Sbjct: 567 tcagcactagctgcaacaaaaagacatctaactcaacggcttgagaatttggatggcaaa 626

                                                                       
Query: 65  atggacgagcaagtggaagtctccaaacaaatccggaatgaggtcgttgatgttaaaact 124
           ||||| || ||||| || |||||||||   ||  | |||||||||  ||||||||||  |
Sbjct: 627 atggatgaacaagtagaggtctccaaagctattagaaatgaggtcaatgatgttaaagat 686

                                                                       
Query: 125 gatctgtctcaaattggctttgacgttgaagcaattcaacagatggtagccggattggaa 184
           || |||||||||||||| ||||| || ||| |||||||  | ||||| || |||||||| 
Sbjct: 687 gacctgtctcaaattggatttgatgtcgaatcaattcagaaaatggttgctggattggag 746

                                                                       
Query: 185 gagaagatcgagctgcttgacaacaagcaggatgcggctaatgctggtatatggtacctc 244
           |  ||||||||| | ||||| ||||| ||||| | ||||||| ||||||| ||||| |||
Sbjct: 747 ggaaagatcgagttacttgagaacaaacaggacgtggctaatactggtatctggtatctc 806

                                                            
Query: 245 tgccgaatggcaggaggtataaaagagggaataaatgccaagtttttcc 293
           |||| | | ||||| ||| ||||||| ||||||||  ||| ||||||||
Sbjct: 807 tgccaagtagcaggcggtttaaaagatggaataaacaccaggtttttcc 855



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>gb|AC108761.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone
             OSJNBa0087J09, complete sequence
          Length = 153351

 Score = 95.6 bits (48), Expect = 7e-17
 Identities = 72/80 (90%)
 Strand = Plus / Plus

                                                                         
Query: 212   caggatgcggctaatgctggtatatggtacctctgccgaatggcaggaggtataaaagag 271
             ||||||||  ||||||||||| ||||||||||||||| ||| || |||||| ||||||| 
Sbjct: 53776 caggatgcaactaatgctggtgtatggtacctctgccaaatagctggaggtctaaaagat 53835

                                 
Query: 272   ggaataaatgccaagttttt 291
             ||||||||||||||||||||
Sbjct: 53836 ggaataaatgccaagttttt 53855



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 52/59 (88%)
 Strand = Plus / Plus

                                                                        
Query: 124   tgatctgtctcaaattggctttgacgttgaagcaattcaacagatggtagccggattgg 182
             |||||||||||||||||| |||||  ||| |||||| ||||||||||| || |||||||
Sbjct: 53519 tgatctgtctcaaattggatttgatattgcagcaatccaacagatggttgctggattgg 53577



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 45/51 (88%)
 Strand = Plus / Plus

                                                                
Query: 41    cgccttgagaatttggatggcaaaatggacgagcaagtggaagtctccaaa 91
             ||||| || ||||| ||||| |||||||| ||||||||||| |||||||||
Sbjct: 52797 cgcctggaaaatttagatgggaaaatggatgagcaagtggaggtctccaaa 52847



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>emb|X98487.1|LMPGKCG L.mexicana PGKC gene for glycosomal phosphoglycerate kinase
          Length = 1440

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 188 aagatcgagctgcttgacaaca 209
           ||||||||||||||||||||||
Sbjct: 658 aagatcgagctgcttgacaaca 679



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>emb|X98486.1|LMPGKBC L.mexicana PGKB gene for cytosolic phosphoglycerate kinase
          Length = 1254

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 188 aagatcgagctgcttgacaaca 209
           ||||||||||||||||||||||
Sbjct: 658 aagatcgagctgcttgacaaca 679



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>gb|AF339905.1|AF339905S1 Leishmania major phosphoglycerate kinase B and phosphoglycerate
            kinase C genes, complete cds; and unknown genes
          Length = 26435

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 188  aagatcgagctgcttgacaaca 209
            ||||||||||||||||||||||
Sbjct: 3492 aagatcgagctgcttgacaaca 3513



 Score = 44.1 bits (22), Expect = 0.25
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 188 aagatcgagctgcttgacaaca 209
           ||||||||||||||||||||||
Sbjct: 826 aagatcgagctgcttgacaaca 847



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>gb|AC105336.14| Mus musculus chromosome 3, clone RP24-277J22, complete sequence
          Length = 176399

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 12     tagcagcaacgaaaagacat 31
              ||||||||||||||||||||
Sbjct: 104981 tagcagcaacgaaaagacat 105000



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>gb|AC127701.2| Homo sapiens BAC clone RP11-79F18 from UL, complete sequence
          Length = 161405

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 21    cgaaaagacatttaacaaaa 40
             ||||||||||||||||||||
Sbjct: 90636 cgaaaagacatttaacaaaa 90617



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>gb|AC019340.6| Homo sapiens BAC clone RP11-715L17 from 7, complete sequence
          Length = 190137

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 21    cgaaaagacatttaacaaaa 40
             ||||||||||||||||||||
Sbjct: 83375 cgaaaagacatttaacaaaa 83394



 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 21   cgaaaagacatttaacaaaa 40
            ||||||||||||||||||||
Sbjct: 4383 cgaaaagacatttaacaaaa 4364



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>ref|XM_317666.2| Anopheles gambiae str. PEST ENSANGP00000018515
           (ENSANGG00000016026), partial mRNA
          Length = 1221

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 185 gagaagatcgagctgcttga 204
           ||||||||||||||||||||
Sbjct: 907 gagaagatcgagctgcttga 926


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,688,349
Number of Sequences: 3902068
Number of extensions: 2688349
Number of successful extensions: 44113
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 44093
Number of HSP's gapped (non-prelim): 19
length of query: 293
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 271
effective length of database: 17,147,199,772
effective search space: 4646891138212
effective search space used: 4646891138212
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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