| Clone Name | bags8m22 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK061852.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-F09, full insert sequence Length = 1415 Score = 188 bits (95), Expect = 7e-45 Identities = 212/251 (84%) Strand = Plus / Plus Query: 41 cgccttgagaatttggatggcaaaatggacgagcaagtggaagtctccaaacaaatccgg 100 ||||| || ||||| ||||| |||||||| ||||||||||| ||||||||| || | Sbjct: 616 cgcctggaaaatttagatgggaaaatggatgagcaagtggaggtctccaaaattattaga 675 Query: 101 aatgaggtcgttgatgttaaaactgatctgtctcaaattggctttgacgttgaagcaatt 160 || ||||| |||||| ||| |||||||||||||||||| ||||| ||| |||||| Sbjct: 676 aacgaggtgaatgatgtcaaagatgatctgtctcaaattggatttgatattgcagcaatc 735 Query: 161 caacagatggtagccggattggaagagaagatcgagctgcttgacaacaagcaggatgcg 220 ||||||||||| || |||||||||| |||||||||| ||||||| || || |||||||| Sbjct: 736 caacagatggttgctggattggaagggaagatcgagttgcttgataataaacaggatgca 795 Query: 221 gctaatgctggtatatggtacctctgccgaatggcaggaggtataaaagagggaataaat 280 ||||||||||| ||||||||||||||| ||| || |||||| ||||||| ||||||||| Sbjct: 796 actaatgctggtgtatggtacctctgccaaatagctggaggtctaaaagatggaataaat 855 Query: 281 gccaagttttt 291 ||||||||||| Sbjct: 856 gccaagttttt 866
>gb|AY104267.1| Zea mays PCO085704 mRNA sequence Length = 1009 Score = 161 bits (81), Expect = 2e-36 Identities = 237/289 (82%) Strand = Plus / Plus Query: 5 tcagcgctagcagcaacgaaaagacatttaacaaaacgccttgagaatttggatggcaaa 64 ||||| ||||| ||||| ||||||||| |||| |||| ||||||||||||||||||||| Sbjct: 567 tcagcactagctgcaacaaaaagacatctaactcaacggcttgagaatttggatggcaaa 626 Query: 65 atggacgagcaagtggaagtctccaaacaaatccggaatgaggtcgttgatgttaaaact 124 ||||| || ||||| || ||||||||| || | ||||||||| |||||||||| | Sbjct: 627 atggatgaacaagtagaggtctccaaagctattagaaatgaggtcaatgatgttaaagat 686 Query: 125 gatctgtctcaaattggctttgacgttgaagcaattcaacagatggtagccggattggaa 184 || |||||||||||||| ||||| || ||| ||||||| | ||||| || |||||||| Sbjct: 687 gacctgtctcaaattggatttgatgtcgaatcaattcagaaaatggttgctggattggag 746 Query: 185 gagaagatcgagctgcttgacaacaagcaggatgcggctaatgctggtatatggtacctc 244 | ||||||||| | ||||| ||||| ||||| | ||||||| ||||||| ||||| ||| Sbjct: 747 ggaaagatcgagttacttgagaacaaacaggacgtggctaatactggtatctggtatctc 806 Query: 245 tgccgaatggcaggaggtataaaagagggaataaatgccaagtttttcc 293 |||| | | ||||| ||| ||||||| |||||||| ||| |||||||| Sbjct: 807 tgccaagtagcaggcggtttaaaagatggaataaacaccaggtttttcc 855
>gb|AC108761.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone OSJNBa0087J09, complete sequence Length = 153351 Score = 95.6 bits (48), Expect = 7e-17 Identities = 72/80 (90%) Strand = Plus / Plus Query: 212 caggatgcggctaatgctggtatatggtacctctgccgaatggcaggaggtataaaagag 271 |||||||| ||||||||||| ||||||||||||||| ||| || |||||| ||||||| Sbjct: 53776 caggatgcaactaatgctggtgtatggtacctctgccaaatagctggaggtctaaaagat 53835 Query: 272 ggaataaatgccaagttttt 291 |||||||||||||||||||| Sbjct: 53836 ggaataaatgccaagttttt 53855 Score = 61.9 bits (31), Expect = 1e-06 Identities = 52/59 (88%) Strand = Plus / Plus Query: 124 tgatctgtctcaaattggctttgacgttgaagcaattcaacagatggtagccggattgg 182 |||||||||||||||||| ||||| ||| |||||| ||||||||||| || ||||||| Sbjct: 53519 tgatctgtctcaaattggatttgatattgcagcaatccaacagatggttgctggattgg 53577 Score = 54.0 bits (27), Expect = 3e-04 Identities = 45/51 (88%) Strand = Plus / Plus Query: 41 cgccttgagaatttggatggcaaaatggacgagcaagtggaagtctccaaa 91 ||||| || ||||| ||||| |||||||| ||||||||||| ||||||||| Sbjct: 52797 cgcctggaaaatttagatgggaaaatggatgagcaagtggaggtctccaaa 52847
>emb|X98487.1|LMPGKCG L.mexicana PGKC gene for glycosomal phosphoglycerate kinase Length = 1440 Score = 44.1 bits (22), Expect = 0.25 Identities = 22/22 (100%) Strand = Plus / Plus Query: 188 aagatcgagctgcttgacaaca 209 |||||||||||||||||||||| Sbjct: 658 aagatcgagctgcttgacaaca 679
>emb|X98486.1|LMPGKBC L.mexicana PGKB gene for cytosolic phosphoglycerate kinase Length = 1254 Score = 44.1 bits (22), Expect = 0.25 Identities = 22/22 (100%) Strand = Plus / Plus Query: 188 aagatcgagctgcttgacaaca 209 |||||||||||||||||||||| Sbjct: 658 aagatcgagctgcttgacaaca 679
>gb|AF339905.1|AF339905S1 Leishmania major phosphoglycerate kinase B and phosphoglycerate kinase C genes, complete cds; and unknown genes Length = 26435 Score = 44.1 bits (22), Expect = 0.25 Identities = 22/22 (100%) Strand = Plus / Plus Query: 188 aagatcgagctgcttgacaaca 209 |||||||||||||||||||||| Sbjct: 3492 aagatcgagctgcttgacaaca 3513 Score = 44.1 bits (22), Expect = 0.25 Identities = 22/22 (100%) Strand = Plus / Plus Query: 188 aagatcgagctgcttgacaaca 209 |||||||||||||||||||||| Sbjct: 826 aagatcgagctgcttgacaaca 847
>gb|AC105336.14| Mus musculus chromosome 3, clone RP24-277J22, complete sequence Length = 176399 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 tagcagcaacgaaaagacat 31 |||||||||||||||||||| Sbjct: 104981 tagcagcaacgaaaagacat 105000
>gb|AC127701.2| Homo sapiens BAC clone RP11-79F18 from UL, complete sequence Length = 161405 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 cgaaaagacatttaacaaaa 40 |||||||||||||||||||| Sbjct: 90636 cgaaaagacatttaacaaaa 90617
>gb|AC019340.6| Homo sapiens BAC clone RP11-715L17 from 7, complete sequence Length = 190137 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 21 cgaaaagacatttaacaaaa 40 |||||||||||||||||||| Sbjct: 83375 cgaaaagacatttaacaaaa 83394 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 cgaaaagacatttaacaaaa 40 |||||||||||||||||||| Sbjct: 4383 cgaaaagacatttaacaaaa 4364
>ref|XM_317666.2| Anopheles gambiae str. PEST ENSANGP00000018515 (ENSANGG00000016026), partial mRNA Length = 1221 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 185 gagaagatcgagctgcttga 204 |||||||||||||||||||| Sbjct: 907 gagaagatcgagctgcttga 926 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,688,349 Number of Sequences: 3902068 Number of extensions: 2688349 Number of successful extensions: 44113 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 10 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 44093 Number of HSP's gapped (non-prelim): 19 length of query: 293 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 271 effective length of database: 17,147,199,772 effective search space: 4646891138212 effective search space used: 4646891138212 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)