ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags8l22 |
|---|---|
| Clone Library Name | barley_pub |
>S36A1_MOUSE (Q8K4D3) Proton-coupled amino acid transporter 1 (Proton/amino acid| transporter 1) (Solute carrier family 36 member 1) Length = 475 Score = 59.7 bits (143), Expect = 5e-09 Identities = 43/140 (30%), Positives = 62/140 (44%), Gaps = 3/140 (2%) Frame = +3 Query: 117 WSGMPFAIGIYGFCYSGHSVFPNIYQSMSXRTKFPKALFICFVICTAIYGSXAIIGYLMF 296 W P G F + G V + M KFP L++ I T +Y S +GYL F Sbjct: 254 WKTYPLFFGTAIFAFEGIGVVLPLENKMKDSQKFPLILYLGMAIITVLYISLGSLGYLQF 313 Query: 297 GDKTMSQITLNLPKESFASKVALWTTVINPFT---KFALLLNPLARSLEELRPEGFLNET 467 G ITLNLP V L ++ FT +F + + ++ PE F E Sbjct: 314 GANIKGSITLNLPNCWLYQSVKLLYSIGIFFTYALQFYVAAEIIIPAIVSRVPEHF--EL 371 Query: 468 IVSIILRTSLVASTVVIAFL 527 +V + +RT++V T V+A L Sbjct: 372 MVDLCVRTAMVCVTCVLAIL 391
>S36A1_RAT (Q924A5) Proton-coupled amino acid transporter 1 (Proton/amino acid| transporter 1) (Solute carrier family 36 member 1) (Lysosomal amino acid transporter 1) (LYAAT-1) (Neutral amino acid/proton symporter) Length = 475 Score = 58.5 bits (140), Expect = 1e-08 Identities = 43/140 (30%), Positives = 61/140 (43%), Gaps = 3/140 (2%) Frame = +3 Query: 117 WSGMPFAIGIYGFCYSGHSVFPNIYQSMSXRTKFPKALFICFVICTAIYGSXAIIGYLMF 296 W P G F + G V + M KFP L++ I T +Y S +GYL F Sbjct: 254 WKTYPLFFGTAIFAFEGIGVVLPLENKMKDSQKFPLILYLGMAIITVLYISLGSLGYLQF 313 Query: 297 GDKTMSQITLNLPKESFASKVALWTTVINPFT---KFALLLNPLARSLEELRPEGFLNET 467 G ITLNLP V L ++ FT +F + + ++ PE F E Sbjct: 314 GADIKGSITLNLPNCWLYQSVKLLYSIGIFFTYALQFYVAAEIIIPAIVSRVPERF--EL 371 Query: 468 IVSIILRTSLVASTVVIAFL 527 +V + RT++V T V+A L Sbjct: 372 VVDLSARTAMVCVTCVLAVL 391
>AVT1_YEAST (P47082) Vacuolar amino acid transporter 1| Length = 602 Score = 56.2 bits (134), Expect = 5e-08 Identities = 47/165 (28%), Positives = 73/165 (44%), Gaps = 11/165 (6%) Frame = +3 Query: 33 TLVVFICCAL*SALLKV*GS-IRPGKQ*EW----SGMPFAIGIYGFCYSGHSVFPNIYQS 197 T++V CC L + GS + P + W + +IG+ C+ GH+VFPN+ Sbjct: 356 TVLVICCCGLYKSSSP--GSLVNPMETSMWPIDLKHLCLSIGLLSACWGGHAVFPNLKTD 413 Query: 198 MSXRTKFPKALFICFVICTAIYGSXAIIGYLMFGDKTMSQITLNL------PKESFASKV 359 M KF L + I + A+IG+LMFG+ +IT N+ PK + Sbjct: 414 MRHPDKFKDCLKTTYKITSVTDIGTAVIGFLMFGNLVKDEITKNVLLTEGYPKFVYGLIS 473 Query: 360 ALWTTVINPFTKFALLLNPLARSLEELRPEGFLNETIVSIILRTS 494 AL T + P K L P+ L+ L ++E +I R + Sbjct: 474 ALMTII--PIAKTPLNARPIVSVLDVLMNVQHIDEAASAIKRRAA 516
>S36A1_HUMAN (Q7Z2H8) Proton-coupled amino acid transporter 1 (Proton/amino acid| transporter 1) (Solute carrier family 36 member 1) Length = 476 Score = 55.1 bits (131), Expect = 1e-07 Identities = 42/140 (30%), Positives = 59/140 (42%), Gaps = 3/140 (2%) Frame = +3 Query: 117 WSGMPFAIGIYGFCYSGHSVFPNIYQSMSXRTKFPKALFICFVICTAIYGSXAIIGYLMF 296 W P G F + G + + M KFP L++ VI T +Y S +GYL F Sbjct: 255 WKTYPLFFGTAIFSFEGIGMVLPLENKMKDPRKFPLILYLGMVIVTILYISLGCLGYLQF 314 Query: 297 GDKTMSQITLNLPKESFASKVALWTTVINPFT---KFALLLNPLARSLEELRPEGFLNET 467 G ITLNLP V L ++ FT +F + + PE E Sbjct: 315 GANIQGSITLNLPNCWLYQSVKLLYSIGIFFTYALQFYVPAEIIIPFFVSRAPEHC--EL 372 Query: 468 IVSIILRTSLVASTVVIAFL 527 +V + +RT LV T ++A L Sbjct: 373 VVDLFVRTVLVCLTCILAIL 392
>AVT4_YEAST (P50944) Vacuolar amino acid transporter 4| Length = 713 Score = 44.7 bits (104), Expect = 2e-04 Identities = 26/92 (28%), Positives = 44/92 (47%) Frame = +3 Query: 138 IGIYGFCYSGHSVFPNIYQSMSXRTKFPKALFICFVICTAIYGSXAIIGYLMFGDKTMSQ 317 IG F + G + + SM KFP L + + T ++ S A +GYL +G + Sbjct: 488 IGTAIFAFEGIGLIIPVQDSMRNPEKFPLVLALVILTATILFISIATLGYLAYGSNVQTV 547 Query: 318 ITLNLPKESFASKVALWTTVINPFTKFALLLN 413 I LNLP+ + ++ +I F A++L+ Sbjct: 548 ILLNLPQSN------IFVNLIQLFYSIAIMLS 573
>UNC47_CAEEL (P34579) Vesicular GABA transporter (Uncoordinated protein 47)| (Protein unc-47) Length = 486 Score = 41.2 bits (95), Expect = 0.002 Identities = 22/80 (27%), Positives = 38/80 (47%) Frame = +3 Query: 126 MPFAIGIYGFCYSGHSVFPNIYQSMSXRTKFPKALFICFVICTAIYGSXAIIGYLMFGDK 305 +P +G+ F Y+ H PN+ +M +F L + ++G+L FG+ Sbjct: 267 LPTIVGMVVFGYTSHIFLPNLEGNMKNPAQFNVMLKWSHIAAAVFKVVFGMLGFLTFGEL 326 Query: 306 TMSQITLNLPKESFASKVAL 365 T +I+ +LP +SF V L Sbjct: 327 TQEEISNSLPNQSFKILVNL 346
>YAN9_SCHPO (Q10074) Hypothetical protein C3H1.09c in chromosome I| Length = 656 Score = 38.9 bits (89), Expect = 0.009 Identities = 24/92 (26%), Positives = 41/92 (44%) Frame = +3 Query: 138 IGIYGFCYSGHSVFPNIYQSMSXRTKFPKALFICFVICTAIYGSXAIIGYLMFGDKTMSQ 317 IG+ F Y G + I + M+ PK L + ++ S ++ Y FG K + Sbjct: 461 IGVAIFTYEGICLILPIQEQMAKPKNLPKLLTGVMAAISLLFISIGLLSYAAFGSKVKTV 520 Query: 318 ITLNLPKESFASKVALWTTVINPFTKFALLLN 413 + LN+P+ +F T +I A+LL+ Sbjct: 521 VILNMPESTF-------TVIIQFLYAIAILLS 545
>VIAAT_RAT (O35458) Vesicular inhibitory amino acid transporter (GABA and| glycine transporter) (Vesicular GABA transporter) (rGVAT) (Solute carrier family 32 member 1) Length = 525 Score = 38.5 bits (88), Expect = 0.011 Identities = 20/69 (28%), Positives = 34/69 (49%) Frame = +3 Query: 129 PFAIGIYGFCYSGHSVFPNIYQSMSXRTKFPKALFICFVICTAIYGSXAIIGYLMFGDKT 308 P +IGI F Y+ P++ +M ++F + + + G A++ YL + D+T Sbjct: 307 PISIGIIVFSYTSQIFLPSLEGNMQQPSEFHCMMNWTHIAACVLKGLFALVAYLTWADET 366 Query: 309 MSQITLNLP 335 IT NLP Sbjct: 367 KEVITDNLP 375
>VIAAT_MOUSE (O35633) Vesicular inhibitory amino acid transporter (GABA and| glycine transporter) (Vesicular GABA transporter) (mVIAAT) (mVGAT) (Solute carrier family 32 member 1) Length = 525 Score = 38.5 bits (88), Expect = 0.011 Identities = 20/69 (28%), Positives = 34/69 (49%) Frame = +3 Query: 129 PFAIGIYGFCYSGHSVFPNIYQSMSXRTKFPKALFICFVICTAIYGSXAIIGYLMFGDKT 308 P +IGI F Y+ P++ +M ++F + + + G A++ YL + D+T Sbjct: 307 PISIGIIVFSYTSQIFLPSLEGNMQQPSEFHCMMNWTHIAACVLKGLFALVAYLTWADET 366 Query: 309 MSQITLNLP 335 IT NLP Sbjct: 367 KEVITDNLP 375
>VIAAT_MACFA (Q95KE2) Vesicular inhibitory amino acid transporter (GABA and| glycine transporter) (Vesicular GABA transporter) (Solute carrier family 32 member 1) Length = 525 Score = 38.5 bits (88), Expect = 0.011 Identities = 20/69 (28%), Positives = 34/69 (49%) Frame = +3 Query: 129 PFAIGIYGFCYSGHSVFPNIYQSMSXRTKFPKALFICFVICTAIYGSXAIIGYLMFGDKT 308 P +IGI F Y+ P++ +M ++F + + + G A++ YL + D+T Sbjct: 307 PISIGIIVFSYTSQIFLPSLEGNMQQPSEFHCMMNWTHIAACVLKGLFALVAYLTWADET 366 Query: 309 MSQITLNLP 335 IT NLP Sbjct: 367 KEVITDNLP 375
>VIAAT_HUMAN (Q9H598) Vesicular inhibitory amino acid transporter (GABA and| glycine transporter) (Vesicular GABA transporter) (hVIAAT) (Solute carrier family 32 member 1) Length = 525 Score = 38.5 bits (88), Expect = 0.011 Identities = 20/69 (28%), Positives = 34/69 (49%) Frame = +3 Query: 129 PFAIGIYGFCYSGHSVFPNIYQSMSXRTKFPKALFICFVICTAIYGSXAIIGYLMFGDKT 308 P +IGI F Y+ P++ +M ++F + + + G A++ YL + D+T Sbjct: 307 PISIGIIVFSYTSQIFLPSLEGNMQQPSEFHCMMNWTHIAACVLKGLFALVAYLTWADET 366 Query: 309 MSQITLNLP 335 IT NLP Sbjct: 367 KEVITDNLP 375
>YMJ2_CAEEL (P34479) Hypothetical protein F59B2.2 in chromosome III| Length = 460 Score = 38.1 bits (87), Expect = 0.015 Identities = 26/94 (27%), Positives = 37/94 (39%), Gaps = 12/94 (12%) Frame = +3 Query: 114 EWSGMPFA---------IGIYGFCYSGHSVFPNIYQSMSXRTKFPK---ALFICFVICTA 257 +W +P A IG+ + + G ++ I + F L +ICTA Sbjct: 223 QWDKLPAATNFTGTITMIGMSMYAFEGQTMILPIENKLDNPAAFLAPFGVLSTTMIICTA 282 Query: 258 IYGSXAIIGYLMFGDKTMSQITLNLPKESFASKV 359 + GY FGD IT N+PKE S V Sbjct: 283 FMTALGFFGYTGFGDSIAPTITTNVPKEGLYSTV 316
>CEF1_NEUCR (Q7SAF6) Pre-mRNA-splicing factor cef-1| Length = 779 Score = 33.9 bits (76), Expect = 0.28 Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 2/57 (3%) Frame = -1 Query: 481 IIETIVSFKNPSGRNSSKLRAN--GFNNKANLVKGLITVVHRATFEANDSFGRFKVI 317 +I+ IV+ + KL + G+ N+A +++ I+ H A +AN++ G FKV+ Sbjct: 669 VIDQIVASAEKGNKLEKKLNLHLGGYKNRAEMLRKKISEAHEALEKANNALGAFKVL 725
>AVT6_YEAST (P40074) Vacuolar amino acid transporter 6| Length = 448 Score = 32.0 bits (71), Expect = 1.1 Identities = 25/101 (24%), Positives = 45/101 (44%), Gaps = 2/101 (1%) Frame = +3 Query: 144 IYGFCYS-GHSVFPNIYQSMSXRTKFP-KALFICFVICTAIYGSXAIIGYLMFGDKTMSQ 317 I+ F Y+ H++F I + S R + K I + +Y + GYL FGD + Sbjct: 201 IFVFAYTCHHNMFSIINEQRSSRFEHVMKIPLIAISLALILYIAIGCAGYLTFGDNIIGN 260 Query: 318 ITLNLPKESFASKVALWTTVINPFTKFALLLNPLARSLEEL 440 I + P ++ +S + V+ F L +P S+ ++ Sbjct: 261 IIMLYP-QAVSSTIGRIAIVLLVMLAFPLQCHPARASIHQI 300
>AVT3_YEAST (P36062) Vacuolar amino acid transporter 3| Length = 692 Score = 31.6 bits (70), Expect = 1.4 Identities = 26/107 (24%), Positives = 41/107 (38%) Frame = +3 Query: 114 EWSGMPFAIGIYGFCYSGHSVFPNIYQSMSXRTKFPKALFICFVICTAIYGSXAIIGYLM 293 +WS IG F + G + I +SM F +L I I+ S ++ Y Sbjct: 482 DWS---LFIGTAIFTFEGIGLLIPIQESMKHPKHFRPSLSAVMCIVAVIFISCGLLCYAA 538 Query: 294 FGDKTMSQITLNLPKESFASKVALWTTVINPFTKFALLLNPLARSLE 434 FG + + LN P+++ + + L L P R LE Sbjct: 539 FGSDVKTVVLLNFPQDTSYTLTVQLLYALAILLSTPLQLFPAIRILE 585
>PYRD2_KLULA (Q6CTX8) Dihydroorotate dehydrogenase, mitochondrial precursor (EC| 1.3.3.1) (Dihydroorotate oxidase) (DHOdehase) (DHODase) (DHOD) Length = 445 Score = 31.2 bits (69), Expect = 1.8 Identities = 32/129 (24%), Positives = 52/129 (40%), Gaps = 6/129 (4%) Frame = +3 Query: 138 IGIYGFCYSGHSVFPNIYQSMSXRTKFPKALFICFVICTAIYGSXAIIGYLMFGDKTMSQ 317 I YGF SGH N QS I I + ++ ++ ++ DK + Sbjct: 172 INRYGFNSSGHDTVVNTLQSR-----------ITSFINSYMFKDNSVENLSLYKDKLLG- 219 Query: 318 ITLNLPKESFASKVALWTTVINPFTKFALLL-----NPLARSLEELRPEGFLNETIVSII 482 +NL K +V + + F K+A +L +P L L+ E L + + ++ Sbjct: 220 --VNLGKNKTGDEVQDYLKGVESFQKYADVLVINVSSPNTPGLRSLQKESILTDLLTQVV 277 Query: 483 L-RTSLVAS 506 R SLV S Sbjct: 278 AKRDSLVTS 286
>Y609_METJA (Q58026) Hypothetical protein MJ0609| Length = 435 Score = 31.2 bits (69), Expect = 1.8 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 1/54 (1%) Frame = +3 Query: 120 SGMPFAIGIYGFCYSGHSVFPNIYQSMSXRTK-FPKALFICFVICTAIYGSXAI 278 SGM FA I+ Y G V N + + K P+A+FI +I +Y AI Sbjct: 188 SGMIFASAIFFLSYMGFGVITNASEHIENPKKNVPRAIFISILIVMFVYVGVAI 241
>4CL2_SOYBN (P31687) 4-coumarate--CoA ligase 2 (EC 6.2.1.12) (4CL 2)| (4-coumaroyl-CoA synthase 2) (Clone 4CL16) Length = 562 Score = 30.8 bits (68), Expect = 2.4 Identities = 12/21 (57%), Positives = 15/21 (71%) Frame = -1 Query: 151 P*IPIAKGMPLHSYCFPGLME 89 P IPI+ +PLHSYCF L + Sbjct: 32 PDIPISNHLPLHSYCFQNLSQ 52
>NORM_CAUCR (P58163) Probable multidrug resistance protein norM| (Multidrug-efflux transporter) Length = 471 Score = 29.6 bits (65), Expect = 5.3 Identities = 30/129 (23%), Positives = 55/129 (42%) Frame = +3 Query: 138 IGIYGFCYSGHSVFPNIYQSMSXRTKFPKALFICFVICTAIYGSXAIIGYLMFGDKTMSQ 317 IG+ G + G ++P + T P AL A+ ++ L F + Sbjct: 342 IGVIGVLF-GLLLYPTKHWVALAYTTDPAAL--------ALILPALVLACLFFAPDAVQV 392 Query: 318 ITLNLPKESFASKVALWTTVINPFTKFALLLNPLARSLEELRPEGFLNETIVSIILRTSL 497 + ++ ++ +W I +AL++ PLA L + G LN +VSII+ + L Sbjct: 393 VAA----QALRARGEVWVPTITHLISYALVMGPLAWWLAIPKGMG-LNGVLVSIIVTSFL 447 Query: 498 VASTVVIAF 524 A +++ F Sbjct: 448 AAGFLLMRF 456
>PSD_ERWCT (Q6D035) Phosphatidylserine decarboxylase proenzyme (EC 4.1.1.65)| [Contains: Phosphatidylserine decarboxylase alpha chain; Phosphatidylserine decarboxylase beta chain] Length = 341 Score = 29.6 bits (65), Expect = 5.3 Identities = 17/40 (42%), Positives = 22/40 (55%) Frame = +2 Query: 305 DNVPNNFESSKRVICLKSCSVDHGYQPFHQICLVVKPIGS 424 DNVPN F ++RVICL D + P QI + +GS Sbjct: 173 DNVPNLFARNERVICL----FDTEFGPLAQILVGATIVGS 208
>PIT1_CHICK (Q9YGL7) Pituitary-specific positive transcription factor 1 (Pit-1)| (Growth hormone factor 1) (GHF-1) Length = 363 Score = 29.3 bits (64), Expect = 7.0 Identities = 11/41 (26%), Positives = 21/41 (51%) Frame = +2 Query: 314 PNNFESSKRVICLKSCSVDHGYQPFHQICLVVKPIGSEFRR 436 P ++ + + SC++ H + P HQ L P S+F++ Sbjct: 140 PCLYKFPEHALSASSCALGHSFTPMHQTLLSDDPTASDFKQ 180
>AVT7_YEAST (P40501) Vacuolar amino acid transporter 7| Length = 490 Score = 29.3 bits (64), Expect = 7.0 Identities = 16/58 (27%), Positives = 27/58 (46%) Frame = +3 Query: 246 ICTAIYGSXAIIGYLMFGDKTMSQITLNLPKESFASKVALWTTVINPFTKFALLLNPL 419 + TA++ + GYL FG++T+ + LN S + + F LL +PL Sbjct: 232 LSTALFLIVGLSGYLTFGNETLGNLMLNYDPNSIWIVIGKFCLGSMLILSFPLLFHPL 289
>4CL2_SOLTU (P31685) 4-coumarate--CoA ligase 2 (EC 6.2.1.12) (4CL 2)| (4-coumaroyl-CoA synthase 2) Length = 545 Score = 29.3 bits (64), Expect = 7.0 Identities = 13/21 (61%), Positives = 14/21 (66%) Frame = -1 Query: 151 P*IPIAKGMPLHSYCFPGLME 89 P I I K +PLHSYCF L E Sbjct: 20 PDIYIPKHLPLHSYCFENLSE 40
>4CL1_SOLTU (P31684) 4-coumarate--CoA ligase 1 (EC 6.2.1.12) (4CL 1)| (4-coumaroyl-CoA synthase 1) Length = 545 Score = 29.3 bits (64), Expect = 7.0 Identities = 13/21 (61%), Positives = 14/21 (66%) Frame = -1 Query: 151 P*IPIAKGMPLHSYCFPGLME 89 P I I K +PLHSYCF L E Sbjct: 20 PDIYIPKHLPLHSYCFENLSE 40 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 78,627,367 Number of Sequences: 219361 Number of extensions: 1624393 Number of successful extensions: 3572 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 3522 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3572 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4027872870 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
