ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags8l21
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1RPO2J_ARATH (Q38859) DNA-directed RNA polymerase II subunit J (E... 91 5e-36
2RPO2J_ANOGA (Q7PVQ9) DNA-directed RNA polymerase II subunit J (E... 62 8e-19
3RPO2J_DROME (Q9VJE4) DNA-directed RNA polymerase II subunit J (E... 62 8e-19
4RPO2J_MOUSE (O08740) DNA-directed RNA polymerase II subunit J (E... 62 5e-18
5RPO2J_HUMAN (P52435) DNA-directed RNA polymerase II subunit J (E... 62 5e-18
6RPO2J_CAEBR (Q60SM4) Probable DNA-directed RNA polymerase II sub... 55 2e-15
7RPO2J_CAEEL (Q9XVH6) Probable DNA-directed RNA polymerase II sub... 55 2e-15
8RPB11_SCHPO (P87123) DNA-directed RNA polymerase II 14.1 kDa pol... 47 7e-09
9RPB11_YEAST (P38902) DNA-directed RNA polymerase II 13.6 kDa pol... 41 4e-08
10RPC19_SCHPO (Q09177) DNA-directed RNA polymerases I and III 14 k... 39 8e-07
11RPC19_YEAST (P28000) DNA-directed RNA polymerases I and III 16 k... 37 3e-06
12RPO1D_XENLA (Q5XK67) DNA-directed RNA polymerase I subunit D (EC... 38 5e-06
13RPO1D_HUMAN (Q9Y2S0) DNA-directed RNA polymerase I subunit D (EC... 35 2e-05
14RPO2J_PLACH (Q4XS21) Probable DNA-directed RNA polymerase II sub... 37 3e-05
15RPO2J_PLABA (Q4YZZ7) Probable DNA-directed RNA polymerase II sub... 37 5e-05
16RPO1D_MOUSE (P97304) DNA-directed RNA polymerase I subunit D (EC... 35 8e-05
17RPO2J_PLAF7 (Q8IER7) Probable DNA-directed RNA polymerase II sub... 33 8e-05
18RPO1D_BRARE (Q6DRI4) DNA-directed RNA polymerase I subunit D (EC... 36 2e-04
19RPO1D_DROME (Q9VIZ0) Probable DNA-directed RNA polymerase I subu... 37 3e-04
20RPO1D_CAEEL (P34476) Probable DNA-directed RNA polymerase I subu... 39 3e-04
21RPO1D_CAEBR (Q61IX2) Probable DNA-directed RNA polymerase I subu... 38 5e-04
22RPOL_SULSO (Q980K0) DNA-directed RNA polymerase subunit L (EC 2.... 36 0.001
23RPOL_PYRFU (Q8U4N1) DNA-directed RNA polymerase subunit L (EC 2.... 27 0.75
24RPOL_PYRKO (Q5JE88) DNA-directed RNA polymerase subunit L (EC 2.... 27 3.5
25RPOL_PYRHO (P57671) DNA-directed RNA polymerase subunit L (EC 2.... 25 5.8
26TSGA_SALTY (Q8ZLK7) Protein tsgA 30 6.9
27TSGA_SALTI (Q8Z1Z8) Protein tsgA 30 6.9
28TSGA_SALPA (Q5PLW2) Protein tsgA 30 6.9
29TSGA_SALCH (Q57J00) Protein tsgA 30 6.9
30RPOL_PYRAB (Q9V2M4) DNA-directed RNA polymerase subunit L (EC 2.... 24 7.4
31CCHCR_PONPY (Q8HZ58) Coiled-coil alpha-helical rod protein 1 (Al... 29 9.0
32CCHCR_PANTR (Q8HZ60) Coiled-coil alpha-helical rod protein 1 (Al... 29 9.0
33CCHCR_PANPA (Q8HZ57) Coiled-coil alpha-helical rod protein 1 (Al... 29 9.0
34CCHCR_HUMAN (Q8TD31) Coiled-coil alpha-helical rod protein 1 (Al... 29 9.0
35CCHCR_GORGO (Q8HZ59) Coiled-coil alpha-helical rod protein 1 (Al... 29 9.0 
>RPO2J_ARATH (Q38859) DNA-directed RNA polymerase II subunit J (EC 2.7.7.6)|
           (DNA-directed RNA polymerase II 13.6 kDa polypeptide)
          Length = 116

 Score = 91.3 bits (225), Expect(2) = 5e-36
 Identities = 44/60 (73%), Positives = 49/60 (81%)
 Frame = +2

Query: 185 NVHFAGYKLPHPLQYKIIVRIHTASQSSPTQAYTQAINDLDKELENLKQAFEDEKTRFES 364
           NV FAGY+LPHPL+YKIIVRIHT SQSSP QAY QAINDLDKEL+ LK  FE E  +F +
Sbjct: 55  NVLFAGYQLPHPLKYKIIVRIHTTSQSSPMQAYNQAINDLDKELDYLKNQFEAEVAKFSN 114



 Score = 79.7 bits (195), Expect(2) = 5e-36
 Identities = 41/53 (77%), Positives = 44/53 (83%)
 Frame = +1

Query: 19  MNAPXRYERFVVPEGTKXGVLRXRIQXIMNAASFTIEREDHTIGNILRMQLHR 177
           MNAP RYERFVVPEGTK  V   R   I+NAASFT+EREDHTIGNI+RMQLHR
Sbjct: 1   MNAPERYERFVVPEGTKK-VSYDRDTKIINAASFTVEREDHTIGNIVRMQLHR 52
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>RPO2J_ANOGA (Q7PVQ9) DNA-directed RNA polymerase II subunit J (EC 2.7.7.6)|
          Length = 117

 Score = 62.4 bits (150), Expect(2) = 8e-19
 Identities = 28/54 (51%), Positives = 38/54 (70%)
 Frame = +2

Query: 182 PNVHFAGYKLPHPLQYKIIVRIHTASQSSPTQAYTQAINDLDKELENLKQAFED 343
           PNV FAGYKLPHPL++K ++RI T S+ SP +A+  AI DL  EL   ++ F +
Sbjct: 54  PNVLFAGYKLPHPLEHKFVLRIQTTSEYSPHEAFMNAITDLLSELSLFEERFRE 107



 Score = 50.8 bits (120), Expect(2) = 8e-19
 Identities = 24/55 (43%), Positives = 37/55 (67%)
 Frame = +1

Query: 19  MNAPXRYERFVVPEGTKXGVLRXRIQXIMNAASFTIEREDHTIGNILRMQLHRXP 183
           MNAP  +E F++ EG K  +++     + NAA FT+ +EDHT+GN++R QL + P
Sbjct: 1   MNAPPTFESFLLYEGEKK-IIKELDMKVPNAAIFTVNKEDHTLGNMIRNQLLKDP 54
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>RPO2J_DROME (Q9VJE4) DNA-directed RNA polymerase II subunit J (EC 2.7.7.6)|
           (DNA-directed RNA polymerase II 13.3 kDa polypeptide)
           (RPB11)
          Length = 117

 Score = 62.0 bits (149), Expect(2) = 8e-19
 Identities = 27/54 (50%), Positives = 38/54 (70%)
 Frame = +2

Query: 182 PNVHFAGYKLPHPLQYKIIVRIHTASQSSPTQAYTQAINDLDKELENLKQAFED 343
           PNV FAGYK+PHPL++K ++RI T +  SP +A+  AI DL  EL   ++ F+D
Sbjct: 54  PNVLFAGYKVPHPLEHKFVIRIQTTADYSPQEAFMNAITDLLAELSLFEERFKD 107



 Score = 51.2 bits (121), Expect(2) = 8e-19
 Identities = 25/55 (45%), Positives = 37/55 (67%)
 Frame = +1

Query: 19  MNAPXRYERFVVPEGTKXGVLRXRIQXIMNAASFTIEREDHTIGNILRMQLHRXP 183
           MNAP  +E F++ EG K  +++     + NAA FTI +EDHT+GN++R QL + P
Sbjct: 1   MNAPPTFESFLLYEGEKK-IIKELDTKVTNAAIFTINKEDHTLGNMIRNQLLKDP 54
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>RPO2J_MOUSE (O08740) DNA-directed RNA polymerase II subunit J (EC 2.7.7.6)|
           (DNA-directed RNA polymerase II 13.3 kDa polypeptide)
           (RPB11) (RPB14)
          Length = 117

 Score = 62.4 bits (150), Expect(2) = 5e-18
 Identities = 28/52 (53%), Positives = 37/52 (71%)
 Frame = +2

Query: 182 PNVHFAGYKLPHPLQYKIIVRIHTASQSSPTQAYTQAINDLDKELENLKQAF 337
           P V FAGYK+PHPL++KII+R+ T    SP +A+T AI DL  EL  L++ F
Sbjct: 54  PQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERF 105



 Score = 48.1 bits (113), Expect(2) = 5e-18
 Identities = 24/56 (42%), Positives = 36/56 (64%)
 Frame = +1

Query: 19  MNAPXRYERFVVPEGTKXGVLRXRIQXIMNAASFTIEREDHTIGNILRMQLHRXPK 186
           MNAP  +E F++ EG K   +    + + NA  FTI +EDHT+GNI++ QL + P+
Sbjct: 1   MNAPPAFESFLLFEGEKKITINKDTK-VPNACLFTINKEDHTLGNIIKSQLLKDPQ 55
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>RPO2J_HUMAN (P52435) DNA-directed RNA polymerase II subunit J (EC 2.7.7.6)|
           (DNA-directed RNA polymerase II 13.3 kDa polypeptide)
           (RPB11)
          Length = 117

 Score = 62.4 bits (150), Expect(2) = 5e-18
 Identities = 28/52 (53%), Positives = 37/52 (71%)
 Frame = +2

Query: 182 PNVHFAGYKLPHPLQYKIIVRIHTASQSSPTQAYTQAINDLDKELENLKQAF 337
           P V FAGYK+PHPL++KII+R+ T    SP +A+T AI DL  EL  L++ F
Sbjct: 54  PQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERF 105



 Score = 48.1 bits (113), Expect(2) = 5e-18
 Identities = 24/56 (42%), Positives = 36/56 (64%)
 Frame = +1

Query: 19  MNAPXRYERFVVPEGTKXGVLRXRIQXIMNAASFTIEREDHTIGNILRMQLHRXPK 186
           MNAP  +E F++ EG K   +    + + NA  FTI +EDHT+GNI++ QL + P+
Sbjct: 1   MNAPPAFESFLLFEGEKKITINKDTK-VPNACLFTINKEDHTLGNIIKSQLLKDPQ 55
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>RPO2J_CAEBR (Q60SM4) Probable DNA-directed RNA polymerase II subunit J (EC|
           2.7.7.6)
          Length = 122

 Score = 54.7 bits (130), Expect(2) = 2e-15
 Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
 Frame = +2

Query: 182 PNVHFAGYKLPHPLQYKIIVRIHTASQSSPTQAYTQAINDLDKELENLKQAFED---EKT 352
           P V FAGYK PHPL++KI++R+ T + ++P  A T AI DL  EL  L+   +    + T
Sbjct: 53  PEVLFAGYKNPHPLEHKILLRVQTTNATTPADALTTAITDLVGELSLLEHRIDSAIKKCT 112

Query: 353 RFESMKQGY 379
           +    ++GY
Sbjct: 113 QSTDTERGY 121



 Score = 47.4 bits (111), Expect(2) = 2e-15
 Identities = 23/56 (41%), Positives = 37/56 (66%)
 Frame = +1

Query: 19  MNAPXRYERFVVPEGTKXGVLRXRIQXIMNAASFTIEREDHTIGNILRMQLHRXPK 186
           MNAP  +E F++ +  K  + +     + NAA FTI +EDHT+GN+L++QL + P+
Sbjct: 1   MNAPAAFESFLLLDDKKIYIEKDT--KVPNAAIFTINKEDHTLGNMLKIQLLKDPE 54
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>RPO2J_CAEEL (Q9XVH6) Probable DNA-directed RNA polymerase II subunit J (EC|
           2.7.7.6)
          Length = 122

 Score = 55.1 bits (131), Expect(2) = 2e-15
 Identities = 26/53 (49%), Positives = 35/53 (66%)
 Frame = +2

Query: 182 PNVHFAGYKLPHPLQYKIIVRIHTASQSSPTQAYTQAINDLDKELENLKQAFE 340
           P V FAGYK PHPL++KI++RI T + ++P  A T AI DL  EL  L+   +
Sbjct: 53  PEVLFAGYKNPHPLEHKILLRIQTTNNTTPADALTTAITDLVGELSLLEHRID 105



 Score = 46.6 bits (109), Expect(2) = 2e-15
 Identities = 23/56 (41%), Positives = 37/56 (66%)
 Frame = +1

Query: 19  MNAPXRYERFVVPEGTKXGVLRXRIQXIMNAASFTIEREDHTIGNILRMQLHRXPK 186
           MNAP  +E F++ +  K  + +     + NAA FTI +EDHT+GN+L++QL + P+
Sbjct: 1   MNAPAAFESFLLLDDKKFYIEKDT--KVPNAAIFTIMKEDHTLGNMLKIQLLKDPE 54
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>RPB11_SCHPO (P87123) DNA-directed RNA polymerase II 14.1 kDa polypeptide (EC|
           2.7.7.6)
          Length = 123

 Score = 47.4 bits (111), Expect(2) = 7e-09
 Identities = 23/53 (43%), Positives = 28/53 (52%)
 Frame = +2

Query: 188 VHFAGYKLPHPLQYKIIVRIHTASQSSPTQAYTQAINDLDKELENLKQAFEDE 346
           V FAGYK+PHPL +  I+R+ T    SP Q    A   L   LE +K  F  E
Sbjct: 55  VLFAGYKVPHPLNHNFILRVQTVEDCSPKQVIVDAAKSLITHLEEIKVNFMRE 107



 Score = 32.0 bits (71), Expect(2) = 7e-09
 Identities = 21/51 (41%), Positives = 26/51 (50%)
 Frame = +1

Query: 19  MNAPXRYERFVVPEGTKXGVLRXRIQXIMNAASFTIEREDHTIGNILRMQL 171
           MN P RYE   +    K  V         NAA  T+E+EDHT+ N+L  QL
Sbjct: 1   MNQPERYELIELMGLPK--VTYELDSKSPNAAVVTLEKEDHTLANMLANQL 49
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>RPB11_YEAST (P38902) DNA-directed RNA polymerase II 13.6 kDa polypeptide (EC|
           2.7.7.6) (B13.6)
          Length = 120

 Score = 41.2 bits (95), Expect(2) = 4e-08
 Identities = 21/51 (41%), Positives = 31/51 (60%)
 Frame = +1

Query: 19  MNAPXRYERFVVPEGTKXGVLRXRIQXIMNAASFTIEREDHTIGNILRMQL 171
           MNAP R+E F++ EG     +    +   NA   T E+EDHT+GN++R +L
Sbjct: 1   MNAPDRFELFLLGEGESKLKIDPDTKA-PNAVVITFEKEDHTLGNLIRAEL 50



 Score = 35.8 bits (81), Expect(2) = 4e-08
 Identities = 20/53 (37%), Positives = 25/53 (47%)
 Frame = +2

Query: 188 VHFAGYKLPHPLQYKIIVRIHTASQSSPTQAYTQAINDLDKELENLKQAFEDE 346
           V FA YK+ HP   +  +RI T     P  A   A N +  +L  LK  FE E
Sbjct: 56  VLFAAYKVEHPFFARFKLRIQTTEGYDPKDALKNACNSIINKLGALKTNFETE 108
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>RPC19_SCHPO (Q09177) DNA-directed RNA polymerases I and III 14 kDa polypeptide|
           (EC 2.7.7.6)
          Length = 125

 Score = 38.5 bits (88), Expect(2) = 8e-07
 Identities = 17/58 (29%), Positives = 30/58 (51%)
 Frame = +2

Query: 182 PNVHFAGYKLPHPLQYKIIVRIHTASQSSPTQAYTQAINDLDKELENLKQAFEDEKTR 355
           P V F GY +PHP + K+  RI TA  ++      + ++DL    + + + F ++  R
Sbjct: 58  PEVEFCGYSIPHPSEAKMNFRIQTAPSTTAVDVLRKGLDDLIDLCDAVTEKFTEQLPR 115



 Score = 33.9 bits (76), Expect(2) = 8e-07
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +1

Query: 103 MNAASFTIEREDHTIGNILRMQLHRXPKCSLC 198
           + + +F I++EDHT+GN LR  + + P+   C
Sbjct: 32  LTSVTFQIQKEDHTLGNSLRYVIMKNPEVEFC 63
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>RPC19_YEAST (P28000) DNA-directed RNA polymerases I and III 16 kDa polypeptide|
           (EC 2.7.7.6) (AC19)
          Length = 142

 Score = 36.6 bits (83), Expect(2) = 3e-06
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +2

Query: 182 PNVHFAGYKLPHPLQYKIIVRIHTASQSSPTQAYTQAINDL 304
           P+V F GY +PHP +  + +RI T  +++   A  + + DL
Sbjct: 84  PDVEFCGYSIPHPSENLLNIRIQTYGETTAVDALQKGLKDL 124



 Score = 33.9 bits (76), Expect(2) = 3e-06
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = +1

Query: 55  PEGTKXGVLRXRIQXIMNAASFTIEREDHTIGNILRMQLHRXPKCSLC 198
           P+  K  +L         +ASF I  EDHT+GN LR  + + P    C
Sbjct: 42  PDREKIKLLTQATSEDGTSASFQIVEEDHTLGNALRYVIMKNPDVEFC 89
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>RPO1D_XENLA (Q5XK67) DNA-directed RNA polymerase I subunit D (EC 2.7.7.6)|
          Length = 114

 Score = 38.1 bits (87), Expect(2) = 5e-06
 Identities = 17/64 (26%), Positives = 31/64 (48%)
 Frame = +2

Query: 182 PNVHFAGYKLPHPLQYKIIVRIHTASQSSPTQAYTQAINDLDKELENLKQAFEDEKTRFE 361
           P V F GY + HP + KI  RI T +     + + + +N+L    +++   FE     ++
Sbjct: 47  PEVEFCGYSITHPSETKINFRIQTRNGIPAVEPFRRGLNELVDVCQHVLNTFETSIKEYK 106

Query: 362 SMKQ 373
             K+
Sbjct: 107 EQKE 110



 Score = 31.6 bits (70), Expect(2) = 5e-06
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 106 NAASFTIEREDHTIGNILRMQLHRXPKCSLC 198
           +  +F +  EDHT+GN LR  + + P+   C
Sbjct: 22  SCVTFVLHEEDHTLGNSLRYMVMKNPEVEFC 52
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>RPO1D_HUMAN (Q9Y2S0) DNA-directed RNA polymerase I subunit D (EC 2.7.7.6)|
           (DNA-directed RNA polymerase I 16 kDa polypeptide)
           (RPA16)
          Length = 133

 Score = 35.4 bits (80), Expect(2) = 2e-05
 Identities = 17/63 (26%), Positives = 29/63 (46%)
 Frame = +2

Query: 182 PNVHFAGYKLPHPLQYKIIVRIHTASQSSPTQAYTQAINDLDKELENLKQAFEDEKTRFE 361
           P V F GY   HP + KI +RI T       + + + +N+L    +++   FE     ++
Sbjct: 63  PEVEFCGYTTTHPSESKINLRIQTRGTLPAVEPFQRGLNELMNVCQHVLDKFEASIKDYK 122

Query: 362 SMK 370
             K
Sbjct: 123 DQK 125



 Score = 32.0 bits (71), Expect(2) = 2e-05
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 106 NAASFTIEREDHTIGNILRMQLHRXPKCSLC 198
           +  +F +  EDHT+GN LR  + + P+   C
Sbjct: 38  HCVTFVLHEEDHTLGNSLRYMIMKNPEVEFC 68
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>RPO2J_PLACH (Q4XS21) Probable DNA-directed RNA polymerase II subunit J (EC|
           2.7.7.6)
          Length = 126

 Score = 36.6 bits (83), Expect(2) = 3e-05
 Identities = 19/55 (34%), Positives = 31/55 (56%)
 Frame = +1

Query: 22  NAPXRYERFVVPEGTKXGVLRXRIQXIMNAASFTIEREDHTIGNILRMQLHRXPK 186
           N P   +  V+P G +   ++ +I    +   FTI+ EDHTIGN+++  L + PK
Sbjct: 8   NKPENVDLLVLPHGEEK--VKCQISDKGDCNIFTIKLEDHTIGNLIKQSLCQDPK 60



 Score = 30.4 bits (67), Expect(2) = 3e-05
 Identities = 14/60 (23%), Positives = 30/60 (50%)
 Frame = +2

Query: 182 PNVHFAGYKLPHPLQYKIIVRIHTASQSSPTQAYTQAINDLDKELENLKQAFEDEKTRFE 361
           P V FA Y+ PHPLQ  I + I     +   +  +  ++ +  ++  L++ F +   +++
Sbjct: 59  PKVTFAAYRQPHPLQNAIEITIRPKGYAG-VKLLSDNVHSILNQVSTLRETFANRVQKYK 117
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>RPO2J_PLABA (Q4YZZ7) Probable DNA-directed RNA polymerase II subunit J (EC|
           2.7.7.6)
          Length = 126

 Score = 36.6 bits (83), Expect(2) = 5e-05
 Identities = 19/55 (34%), Positives = 31/55 (56%)
 Frame = +1

Query: 22  NAPXRYERFVVPEGTKXGVLRXRIQXIMNAASFTIEREDHTIGNILRMQLHRXPK 186
           N P   +  V+P G +   ++ +I    +   FTI+ EDHTIGN+++  L + PK
Sbjct: 8   NKPENVDLLVLPHGEEK--VKCQISDKGDCNIFTIKLEDHTIGNLIKQSLCQDPK 60



 Score = 29.6 bits (65), Expect(2) = 5e-05
 Identities = 14/60 (23%), Positives = 31/60 (51%)
 Frame = +2

Query: 182 PNVHFAGYKLPHPLQYKIIVRIHTASQSSPTQAYTQAINDLDKELENLKQAFEDEKTRFE 361
           P V FA Y+ PHPLQ  I + I     +   +  +  ++ +  ++  L++ F ++  +++
Sbjct: 59  PKVTFAAYRQPHPLQNVIEITIRPKGYAG-VKLLSDNVHTILNQVSTLRETFVNKVQKYK 117
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>RPO1D_MOUSE (P97304) DNA-directed RNA polymerase I subunit D (EC 2.7.7.6)|
           (DNA-directed RNA polymerase I 16 kDa polypeptide)
           (RPA16)
          Length = 133

 Score = 34.7 bits (78), Expect(2) = 8e-05
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
 Frame = +2

Query: 182 PNVHFAGYKLPHPLQYKIIVRIHTASQSSPTQAYTQAINDLDKELENLKQAFE----DEK 349
           P V F GY   HP + KI +RI T       + + + +N+L    +++   FE    D K
Sbjct: 63  PEVEFCGYTTTHPSESKINLRIQTRGALPAVEPFQKGLNELLNVCQHVLVKFEASIKDYK 122

Query: 350 TRFESMKQ 373
            +  S K+
Sbjct: 123 AKKASKKE 130



 Score = 30.8 bits (68), Expect(2) = 8e-05
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 115 SFTIEREDHTIGNILRMQLHRXPKCSLC 198
           +F +  EDHT+GN LR  + + P+   C
Sbjct: 41  TFVLHEEDHTLGNCLRYIIMKNPEVEFC 68
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>RPO2J_PLAF7 (Q8IER7) Probable DNA-directed RNA polymerase II subunit J (EC|
           2.7.7.6)
          Length = 126

 Score = 33.1 bits (74), Expect(2) = 8e-05
 Identities = 13/23 (56%), Positives = 19/23 (82%)
 Frame = +1

Query: 118 FTIEREDHTIGNILRMQLHRXPK 186
           F I+ EDHTIGN++++QL + PK
Sbjct: 38  FVIKLEDHTIGNLIKIQLCQDPK 60



 Score = 32.3 bits (72), Expect(2) = 8e-05
 Identities = 17/66 (25%), Positives = 32/66 (48%)
 Frame = +2

Query: 182 PNVHFAGYKLPHPLQYKIIVRIHTASQSSPTQAYTQAINDLDKELENLKQAFEDEKTRFE 361
           P V FA Y+ PHPLQ  I + I     +   +  +  +N++  ++  LK+ F  +  +++
Sbjct: 59  PKVLFAAYRQPHPLQNAIEITIKPKGYAG-VKLLSDNVNNILSQVATLKENFAKKIQKYK 117

Query: 362 SMKQGY 379
                Y
Sbjct: 118 ESNSYY 123
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>RPO1D_BRARE (Q6DRI4) DNA-directed RNA polymerase I subunit D (EC 2.7.7.6)|
          Length = 112

 Score = 35.8 bits (81), Expect(2) = 2e-04
 Identities = 17/63 (26%), Positives = 30/63 (47%)
 Frame = +2

Query: 185 NVHFAGYKLPHPLQYKIIVRIHTASQSSPTQAYTQAINDLDKELENLKQAFEDEKTRFES 364
           +V F GY + HP + KI  RI T      ++     +N+L    +++ Q FE     F+ 
Sbjct: 47  DVEFCGYSITHPSESKINFRIQTRDGVPASEPLRNGLNNLTDVCKHVLQTFEARMKEFKE 106

Query: 365 MKQ 373
            ++
Sbjct: 107 QEE 109



 Score = 28.1 bits (61), Expect(2) = 2e-04
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +1

Query: 115 SFTIEREDHTIGNILRMQLHRXPKCSLC 198
           +F +  EDHT+GN LR  + +      C
Sbjct: 24  TFVLNEEDHTLGNSLRYMIMKSQDVEFC 51
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>RPO1D_DROME (Q9VIZ0) Probable DNA-directed RNA polymerase I subunit D (EC|
           2.7.7.6)
          Length = 105

 Score = 37.0 bits (84), Expect(2) = 3e-04
 Identities = 19/63 (30%), Positives = 30/63 (47%)
 Frame = +2

Query: 182 PNVHFAGYKLPHPLQYKIIVRIHTASQSSPTQAYTQAINDLDKELENLKQAFEDEKTRFE 361
           P V F GY +PHP + K+  RI  + +        + + DL+   ++    FE E   F 
Sbjct: 41  PEVDFCGYTIPHPTEQKLHFRIQ-SRRDRAIDILKRGLEDLEGLCDHTIVTFEKEMAEFN 99

Query: 362 SMK 370
           +MK
Sbjct: 100 AMK 102



 Score = 26.9 bits (58), Expect(2) = 3e-04
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +1

Query: 115 SFTIEREDHTIGNILRMQLHRXPKCSLC 198
           +F    E HT+GN L+  + R P+   C
Sbjct: 19  TFVFTNEGHTLGNALKTIIARYPEVDFC 46
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>RPO1D_CAEEL (P34476) Probable DNA-directed RNA polymerase I subunit D (EC|
           2.7.7.6)
          Length = 144

 Score = 38.9 bits (89), Expect(2) = 3e-04
 Identities = 16/59 (27%), Positives = 31/59 (52%)
 Frame = +2

Query: 188 VHFAGYKLPHPLQYKIIVRIHTASQSSPTQAYTQAINDLDKELENLKQAFEDEKTRFES 364
           V F GY +PHPL+ KI+ R+ T    +  +   +A   +++    ++  FE+   + +S
Sbjct: 86  VEFCGYNVPHPLEDKILFRVQTKDGINALEVLAKAFESVEQIFSTIRGKFEESYEQSQS 144



 Score = 24.6 bits (52), Expect(2) = 3e-04
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 133 EDHTIGNILRMQLHRXPKCSLC 198
           EDHTIGN ++  L R  +   C
Sbjct: 68  EDHTIGNSIKHILSRMDEVEFC 89
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>RPO1D_CAEBR (Q61IX2) Probable DNA-directed RNA polymerase I subunit D (EC|
           2.7.7.6)
          Length = 145

 Score = 38.1 bits (87), Expect(2) = 5e-04
 Identities = 20/59 (33%), Positives = 31/59 (52%)
 Frame = +2

Query: 188 VHFAGYKLPHPLQYKIIVRIHTASQSSPTQAYTQAINDLDKELENLKQAFEDEKTRFES 364
           V F GY +PHPL+ KI+ R+ T            A+  L K  E+++Q F   + +FE+
Sbjct: 87  VEFCGYNVPHPLEDKILFRVQTKDG-------INALEVLVKAFESVEQVFSTIRGKFEA 138



 Score = 24.6 bits (52), Expect(2) = 5e-04
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 133 EDHTIGNILRMQLHRXPKCSLC 198
           EDHTIGN ++  L R  +   C
Sbjct: 69  EDHTIGNSIKHILSRMDEVEFC 90
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>RPOL_SULSO (Q980K0) DNA-directed RNA polymerase subunit L (EC 2.7.7.6)|
          Length = 92

 Score = 35.8 bits (81), Expect(2) = 0.001
 Identities = 18/39 (46%), Positives = 23/39 (58%)
 Frame = +2

Query: 188 VHFAGYKLPHPLQYKIIVRIHTASQSSPTQAYTQAINDL 304
           V FA Y  PHPL  KIIV+I T    +P  A  +AI ++
Sbjct: 38  VSFASYYQPHPLSDKIIVKILTDGSITPKDALLKAIENI 76



 Score = 25.8 bits (55), Expect(2) = 0.001
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 106 NAASFTIEREDHTIGNILRMQLHR 177
           N     IE EDHT+GN++   L R
Sbjct: 11  NYLELEIEGEDHTLGNLIAGTLRR 34
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>RPOL_PYRFU (Q8U4N1) DNA-directed RNA polymerase subunit L (EC 2.7.7.6)|
          Length = 95

 Score = 26.9 bits (58), Expect(2) = 0.75
 Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = +2

Query: 182 PNVHFAGYKLPHPLQY--KIIVRIHTASQSSPTQAYTQAINDLDKELENLKQAFE 340
           P+V F  Y + HP+    K   R+ T  + +P +A  +A   + +  + + +A+E
Sbjct: 36  PHVKFTAYTIEHPITMARKPRFRVVTDGEITPEEALEEAAKKIFERAKEVLEAWE 90



 Score = 25.0 bits (53), Expect(2) = 0.75
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +1

Query: 106 NAASFTIEREDHTIGNILRMQLHRXP 183
           N   F +E EDHT  N+L   L   P
Sbjct: 11  NLLEFYLEGEDHTFANLLVETLRENP 36
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>RPOL_PYRKO (Q5JE88) DNA-directed RNA polymerase subunit L (EC 2.7.7.6)|
          Length = 94

 Score = 26.6 bits (57), Expect(2) = 3.5
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +1

Query: 106 NAASFTIEREDHTIGNILRMQLH 174
           N   F +E EDHT  N+L   LH
Sbjct: 11  NLLEFYLEGEDHTFANLLTETLH 33



 Score = 23.1 bits (48), Expect(2) = 3.5
 Identities = 13/54 (24%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = +2

Query: 185 NVHFAGYKLPHPLQY--KIIVRIHTASQSSPTQAYTQAINDLDKELENLKQAFE 340
           +V FAGY + HP+    K   ++ T  + +P +A  +A   +      + +A++
Sbjct: 37  HVTFAGYTIEHPITMARKPRFKVVTDGKITPEKALEEAAQKIFDRAREVLEAWK 90
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>RPOL_PYRHO (P57671) DNA-directed RNA polymerase subunit L (EC 2.7.7.6)|
          Length = 95

 Score = 25.0 bits (53), Expect(2) = 5.8
 Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = +2

Query: 182 PNVHFAGYKLPHPLQY--KIIVRIHTASQSSPTQAYTQAINDLDKELENLKQAFE 340
           P+V F  Y + HP+    K   R+ T  + +P +A  +A   +    + +  A+E
Sbjct: 36  PHVKFVAYTIEHPITMARKPRFRVVTDGKVTPEKALEEAARKIFNRAKEVLDAWE 90



 Score = 23.9 bits (50), Expect(2) = 5.8
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +1

Query: 118 FTIEREDHTIGNILRMQLHRXP 183
           F +E EDHT  N+L   L   P
Sbjct: 15  FYLEGEDHTFANLLTEVLREDP 36
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>TSGA_SALTY (Q8ZLK7) Protein tsgA|
          Length = 393

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 11/17 (64%), Positives = 15/17 (88%)
 Frame = -1

Query: 288 WVYACVGEDWLAVWILT 238
           WVYAC+G  +LA++ILT
Sbjct: 164 WVYACIGLVYLAIFILT 180
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>TSGA_SALTI (Q8Z1Z8) Protein tsgA|
          Length = 393

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 11/17 (64%), Positives = 15/17 (88%)
 Frame = -1

Query: 288 WVYACVGEDWLAVWILT 238
           WVYAC+G  +LA++ILT
Sbjct: 164 WVYACIGLVYLAIFILT 180
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>TSGA_SALPA (Q5PLW2) Protein tsgA|
          Length = 393

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 11/17 (64%), Positives = 15/17 (88%)
 Frame = -1

Query: 288 WVYACVGEDWLAVWILT 238
           WVYAC+G  +LA++ILT
Sbjct: 164 WVYACIGLVYLAIFILT 180
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>TSGA_SALCH (Q57J00) Protein tsgA|
          Length = 393

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 11/17 (64%), Positives = 15/17 (88%)
 Frame = -1

Query: 288 WVYACVGEDWLAVWILT 238
           WVYAC+G  +LA++ILT
Sbjct: 164 WVYACIGLVYLAIFILT 180
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>RPOL_PYRAB (Q9V2M4) DNA-directed RNA polymerase subunit L (EC 2.7.7.6)|
          Length = 95

 Score = 24.3 bits (51), Expect(2) = 7.4
 Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = +2

Query: 182 PNVHFAGYKLPHP--LQYKIIVRIHTASQSSPTQAYTQAINDLDKELENLKQAFE 340
           P+V F  Y + HP  +  K   R+ T  + +P +A  +A   +    + +  A+E
Sbjct: 36  PHVKFVAYTIEHPILMARKPRFRVVTDGKITPEKALEEAAKKIFDRAKEVLDAWE 90



 Score = 24.3 bits (51), Expect(2) = 7.4
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +1

Query: 118 FTIEREDHTIGNILRMQLHRXP 183
           F +E EDHT  N+L   L   P
Sbjct: 15  FYLEGEDHTFANLLTETLRENP 36
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>CCHCR_PONPY (Q8HZ58) Coiled-coil alpha-helical rod protein 1 (Alpha helical|
           coiled-coil rod protein)
          Length = 782

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +2

Query: 236 IVRIHTASQSSPTQAYTQAINDLDKELENLKQAFEDEKTR 355
           + R+H    SS TQA+ +A++ L  + E L+++    +TR
Sbjct: 171 VQRLHQEQLSSLTQAHEEALSSLTSKAEGLEKSLSSLETR 210
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>CCHCR_PANTR (Q8HZ60) Coiled-coil alpha-helical rod protein 1 (Alpha helical|
           coiled-coil rod protein)
          Length = 782

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +2

Query: 236 IVRIHTASQSSPTQAYTQAINDLDKELENLKQAFEDEKTR 355
           + R+H    SS TQA+ +A++ L  + E L+++    +TR
Sbjct: 171 VQRLHQEQLSSLTQAHEEALSSLTSKAEGLEKSLSSLETR 210
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>CCHCR_PANPA (Q8HZ57) Coiled-coil alpha-helical rod protein 1 (Alpha helical|
           coiled-coil rod protein)
          Length = 782

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +2

Query: 236 IVRIHTASQSSPTQAYTQAINDLDKELENLKQAFEDEKTR 355
           + R+H    SS TQA+ +A++ L  + E L+++    +TR
Sbjct: 171 VQRLHQEQLSSLTQAHEEALSSLTSKAEGLEKSLSSLETR 210
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>CCHCR_HUMAN (Q8TD31) Coiled-coil alpha-helical rod protein 1 (Alpha helical|
           coiled-coil rod protein) (Putative gene 8 protein) (Pg8)
          Length = 782

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +2

Query: 236 IVRIHTASQSSPTQAYTQAINDLDKELENLKQAFEDEKTR 355
           + R+H    SS TQA+ +A++ L  + E L+++    +TR
Sbjct: 171 VQRLHQEQLSSLTQAHEEALSSLTSKAEGLEKSLSSLETR 210
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>CCHCR_GORGO (Q8HZ59) Coiled-coil alpha-helical rod protein 1 (Alpha helical|
           coiled-coil rod protein)
          Length = 782

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +2

Query: 236 IVRIHTASQSSPTQAYTQAINDLDKELENLKQAFEDEKTR 355
           + R+H    SS TQA+ +A++ L  + E L+++    +TR
Sbjct: 171 VQRLHQEQLSSLTQAHKEALSSLTSKAEGLEKSLSSLETR 210


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,066,313
Number of Sequences: 219361
Number of extensions: 1449344
Number of successful extensions: 4181
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 3956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4177
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5196311029
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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