ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags8l21 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT017828.1| Zea mays clone EL01N0508G02.c mRNA sequence Length = 731 Score = 250 bits (126), Expect = 5e-63 Identities = 284/332 (85%), Gaps = 4/332 (1%) Strand = Plus / Plus Query: 19 atgaatgcccctgnccgctatgagcgcttcgtcgtgcctgagggcacaaagnaaggtgtc 78 ||||||||||||| ||| |||||||| ||||||||||| |||||||| ||| ||| |||| Sbjct: 198 atgaatgcccctgaccgttatgagcgtttcgtcgtgccagagggcaccaagaaag-tgtc 256 Query: 79 cttcgagnaaggatacaaagnatcatgaatgctgcatctttcacaattgaacgtgaagac 138 || ||| | |||||||||| || ||||||||||||| ||||| | ||||| || || Sbjct: 257 ctatgag-agggatacaaag-attgtgaatgctgcatcattcactgtcgaacgcgaggat 314 Query: 139 cacaccatcggcaacatcctccgcatgcagttgcacagggnacccaaatgttcactttgc 198 ||||| | ||||| ||||||||||||||||||||||| | |||||||||||| |||||| Sbjct: 315 cacactgtaggcaatatcctccgcatgcagttgcacagag-acccaaatgttctctttgc 373 Query: 199 tggctataagctgcctcacccccttcagtacaagatcattgttaggatccatactgcaag 258 || |||||||| |||||||| || |||||||||||||||||||||||||| || | || Sbjct: 374 cgggtataagctccctcacccactccagtacaagatcattgttaggatccacacaacgag 433 Query: 259 ccaatcctccccaacgcaggcgtatacccaagcaatcaatgatctagacaaggagctcga 318 ||| |||||||| |||||||| || ||||| || ||||||||||||||||| ||||| || Sbjct: 434 ccagtcctccccgacgcaggcctacacccaggctatcaatgatctagacaaagagcttga 493 Query: 319 gaacctgaagcaagcttttgaggacgagaaga 350 | |||| ||||||||||||||||| ||||||| Sbjct: 494 gtaccttaagcaagcttttgaggatgagaaga 525
>ref|XM_476775.1| Oryza sativa (japonica cultivar-group), mRNA Length = 363 Score = 228 bits (115), Expect = 2e-56 Identities = 215/247 (87%), Gaps = 1/247 (0%) Strand = Plus / Plus Query: 104 tgaatgctgcatctttcacaattgaacgtgaagaccacaccatcggcaacatcctccgca 163 ||||||||| || ||||||||||| ||||| ||||||||||| |||||||||||||||| Sbjct: 83 tgaatgctgggtcattcacaattgagcgtgaggaccacaccattggcaacatcctccgca 142 Query: 164 tgcagttgcacagggnacccaaatgttcactttgctggctataagctgcctcaccccctt 223 ||||| | ||||||| ||||||| || | ||||||||| |||||||| ||||| |||||| Sbjct: 143 tgcagctccacaggg-acccaaacgtcctctttgctggttataagctccctcatcccctt 201 Query: 224 cagtacaagatcattgttaggatccatactgcaagccaatcctccccaacgcaggcgtat 283 |||||||||||| |||| ||| |||||||||||| ||| ||| |||| || || ||||| Sbjct: 202 cagtacaagatccttgtcagggtccatactgcaaaccagtccacccctactcaagcgtac 261 Query: 284 acccaagcaatcaatgatctagacaaggagctcgagaacctgaagcaagcttttgaggac 343 || || |||||||||||| ||||||||||||| ||||| || ||||||||||||||||| Sbjct: 262 acacaggcaatcaatgatttagacaaggagcttgagaatctcaagcaagcttttgaggat 321 Query: 344 gagaaga 350 ||||||| Sbjct: 322 gagaaga 328
>dbj|AK099622.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013053F13, full insert sequence Length = 787 Score = 228 bits (115), Expect = 2e-56 Identities = 215/247 (87%), Gaps = 1/247 (0%) Strand = Plus / Plus Query: 104 tgaatgctgcatctttcacaattgaacgtgaagaccacaccatcggcaacatcctccgca 163 ||||||||| || ||||||||||| ||||| ||||||||||| |||||||||||||||| Sbjct: 260 tgaatgctgggtcattcacaattgagcgtgaggaccacaccattggcaacatcctccgca 319 Query: 164 tgcagttgcacagggnacccaaatgttcactttgctggctataagctgcctcaccccctt 223 ||||| | ||||||| ||||||| || | ||||||||| |||||||| ||||| |||||| Sbjct: 320 tgcagctccacaggg-acccaaacgtcctctttgctggttataagctccctcatcccctt 378 Query: 224 cagtacaagatcattgttaggatccatactgcaagccaatcctccccaacgcaggcgtat 283 |||||||||||| |||| ||| |||||||||||| ||| ||| |||| || || ||||| Sbjct: 379 cagtacaagatccttgtcagggtccatactgcaaaccagtccacccctactcaagcgtac 438 Query: 284 acccaagcaatcaatgatctagacaaggagctcgagaacctgaagcaagcttttgaggac 343 || || |||||||||||| ||||||||||||| ||||| || ||||||||||||||||| Sbjct: 439 acacaggcaatcaatgatttagacaaggagcttgagaatctcaagcaagcttttgaggat 498 Query: 344 gagaaga 350 ||||||| Sbjct: 499 gagaaga 505
>dbj|AK068132.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013131J17, full insert sequence Length = 812 Score = 228 bits (115), Expect = 2e-56 Identities = 215/247 (87%), Gaps = 1/247 (0%) Strand = Plus / Plus Query: 104 tgaatgctgcatctttcacaattgaacgtgaagaccacaccatcggcaacatcctccgca 163 ||||||||| || ||||||||||| ||||| ||||||||||| |||||||||||||||| Sbjct: 262 tgaatgctgggtcattcacaattgagcgtgaggaccacaccattggcaacatcctccgca 321 Query: 164 tgcagttgcacagggnacccaaatgttcactttgctggctataagctgcctcaccccctt 223 ||||| | ||||||| ||||||| || | ||||||||| |||||||| ||||| |||||| Sbjct: 322 tgcagctccacaggg-acccaaacgtcctctttgctggttataagctccctcatcccctt 380 Query: 224 cagtacaagatcattgttaggatccatactgcaagccaatcctccccaacgcaggcgtat 283 |||||||||||| |||| ||| |||||||||||| ||| ||| |||| || || ||||| Sbjct: 381 cagtacaagatccttgtcagggtccatactgcaaaccagtccacccctactcaagcgtac 440 Query: 284 acccaagcaatcaatgatctagacaaggagctcgagaacctgaagcaagcttttgaggac 343 || || |||||||||||| ||||||||||||| ||||| || ||||||||||||||||| Sbjct: 441 acacaggcaatcaatgatttagacaaggagcttgagaatctcaagcaagcttttgaggat 500 Query: 344 gagaaga 350 ||||||| Sbjct: 501 gagaaga 507
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 87.7 bits (44), Expect = 4e-14 Identities = 83/96 (86%) Strand = Plus / Minus Query: 246 tccatactgcaagccaatcctccccaacgcaggcgtatacccaagcaatcaatgatctag 305 |||||||||||| ||| ||| |||| || || ||||| || || |||||||||||| ||| Sbjct: 3846898 tccatactgcaaaccagtccacccctactcaagcgtacacacaggcaatcaatgatttag 3846839 Query: 306 acaaggagctcgagaacctgaagcaagcttttgagg 341 |||||||||| ||||| || |||||||||||||||| Sbjct: 3846838 acaaggagcttgagaatctcaagcaagcttttgagg 3846803 Score = 75.8 bits (38), Expect = 1e-10 Identities = 56/62 (90%) Strand = Plus / Minus Query: 104 tgaatgctgcatctttcacaattgaacgtgaagaccacaccatcggcaacatcctccgca 163 ||||||||| || ||||||||||| ||||| ||||||||||| |||||||||||||||| Sbjct: 3847204 tgaatgctgggtcattcacaattgagcgtgaggaccacaccattggcaacatcctccgca 3847145 Query: 164 tg 165 || Sbjct: 3847144 tg 3847143 Score = 65.9 bits (33), Expect = 1e-07 Identities = 54/61 (88%) Strand = Plus / Minus Query: 180 acccaaatgttcactttgctggctataagctgcctcacccccttcagtacaagatcattg 239 ||||||| || | ||||||||| |||||||| ||||| |||||||||||||||||| ||| Sbjct: 3847044 acccaaacgtcctctttgctggttataagctccctcatccccttcagtacaagatccttg 3846985 Query: 240 t 240 | Sbjct: 3846984 t 3846984
>dbj|AP004670.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0496D04 Length = 197358 Score = 87.7 bits (44), Expect = 4e-14 Identities = 83/96 (86%) Strand = Plus / Minus Query: 246 tccatactgcaagccaatcctccccaacgcaggcgtatacccaagcaatcaatgatctag 305 |||||||||||| ||| ||| |||| || || ||||| || || |||||||||||| ||| Sbjct: 86010 tccatactgcaaaccagtccacccctactcaagcgtacacacaggcaatcaatgatttag 85951 Query: 306 acaaggagctcgagaacctgaagcaagcttttgagg 341 |||||||||| ||||| || |||||||||||||||| Sbjct: 85950 acaaggagcttgagaatctcaagcaagcttttgagg 85915 Score = 75.8 bits (38), Expect = 1e-10 Identities = 56/62 (90%) Strand = Plus / Minus Query: 104 tgaatgctgcatctttcacaattgaacgtgaagaccacaccatcggcaacatcctccgca 163 ||||||||| || ||||||||||| ||||| ||||||||||| |||||||||||||||| Sbjct: 86316 tgaatgctgggtcattcacaattgagcgtgaggaccacaccattggcaacatcctccgca 86257 Query: 164 tg 165 || Sbjct: 86256 tg 86255 Score = 65.9 bits (33), Expect = 1e-07 Identities = 54/61 (88%) Strand = Plus / Minus Query: 180 acccaaatgttcactttgctggctataagctgcctcacccccttcagtacaagatcattg 239 ||||||| || | ||||||||| |||||||| ||||| |||||||||||||||||| ||| Sbjct: 86156 acccaaacgtcctctttgctggttataagctccctcatccccttcagtacaagatccttg 86097 Query: 240 t 240 | Sbjct: 86096 t 86096
>gb|AC160340.2| Mus musculus BAC clone RP23-436E24 from chromosome 12, complete sequence Length = 209911 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Minus Query: 423 gctagtcgatgagtctctgaactcct 448 ||||||| |||||||||||||||||| Sbjct: 57836 gctagtctatgagtctctgaactcct 57811
>dbj|AP006144.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT23P21, TM0261, complete sequence Length = 121882 Score = 44.1 bits (22), Expect = 0.52 Identities = 52/62 (83%) Strand = Plus / Plus Query: 100 atcatgaatgctgcatctttcacaattgaacgtgaagaccacaccatcggcaacatcctc 159 ||||| ||||| ||||| ||||| || || || || || ||||||||||| ||||||||| Sbjct: 40367 atcatcaatgcggcatcgttcaccatagagcgagaggatcacaccatcggaaacatcctc 40426 Query: 160 cg 161 || Sbjct: 40427 cg 40428
>ref|XM_776377.1| PREDICTED: Strongylocentrotus purpuratus similar to anaphase-promoting complex subunit 7 (LOC576029), mRNA Length = 738 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 234 tcattgttaggatccatactg 254 ||||||||||||||||||||| Sbjct: 503 tcattgttaggatccatactg 483 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,233,921 Number of Sequences: 3902068 Number of extensions: 3233921 Number of successful extensions: 51531 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 9 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 51488 Number of HSP's gapped (non-prelim): 38 length of query: 597 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 574 effective length of database: 17,143,297,704 effective search space: 9840252882096 effective search space used: 9840252882096 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
