ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags8l15 |
|---|---|
| Clone Library Name | barley_pub |
>GRP10_BRANA (Q05966) Glycine-rich RNA-binding protein 10| Length = 169 Score = 65.1 bits (157), Expect = 1e-10 Identities = 29/51 (56%), Positives = 42/51 (82%) Frame = +3 Query: 45 TQVVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPR 197 ++++ +R+TGRSRGFGFVTF + +++ AI EM+ ELDGRTI+VN+AQ R Sbjct: 35 SKIINDRETGRSRGFGFVTFKDEKSMKDAIDEMNGKELDGRTITVNEAQSR 85
>GRP2_SORBI (Q99070) Glycine-rich RNA-binding protein 2| Length = 168 Score = 63.5 bits (153), Expect = 4e-10 Identities = 30/51 (58%), Positives = 41/51 (80%) Frame = +3 Query: 45 TQVVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPR 197 ++V+T+R+TGRSRGFGFVTFS +++ AI M+ ELDGR I+VN+AQ R Sbjct: 37 SKVITDRETGRSRGFGFVTFSSEQSMLDAIENMNGKELDGRNITVNQAQSR 87
>GRPA_MAIZE (P10979) Glycine-rich RNA-binding, abscisic acid-inducible protein| Length = 157 Score = 63.2 bits (152), Expect = 6e-10 Identities = 30/51 (58%), Positives = 40/51 (78%) Frame = +3 Query: 45 TQVVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPR 197 ++V+T+R+TGRSRGFGFVTFS ++ AI M+ ELDGR I+VN+AQ R Sbjct: 37 SKVITDRETGRSRGFGFVTFSSENSMLDAIENMNGKELDGRNITVNQAQSR 87
>GRP8_ARATH (Q03251) Glycine-rich RNA-binding protein 8 (CCR1 protein)| Length = 169 Score = 63.2 bits (152), Expect = 6e-10 Identities = 28/51 (54%), Positives = 41/51 (80%) Frame = +3 Query: 45 TQVVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPR 197 ++++ +R++GRSRGFGFVTF + +A+ AI EM+ ELDGR I+VN+AQ R Sbjct: 35 SKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEAQSR 85
>GRP7_ARATH (Q03250) Glycine-rich RNA-binding protein 7| Length = 176 Score = 61.6 bits (148), Expect = 2e-09 Identities = 27/51 (52%), Positives = 41/51 (80%) Frame = +3 Query: 45 TQVVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPR 197 ++++ +R+TGRSRGFGFVTF + +A+ AI M+ +LDGR+I+VN+AQ R Sbjct: 37 SKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQSR 87
>GRP1_DAUCA (Q03878) Glycine-rich RNA-binding protein| Length = 157 Score = 60.8 bits (146), Expect = 3e-09 Identities = 27/51 (52%), Positives = 40/51 (78%) Frame = +3 Query: 45 TQVVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPR 197 ++++ +R+TGRSRGFGFVTF + +++ AI M+ ELDGR I+VN+AQ R Sbjct: 35 SKIINDRETGRSRGFGFVTFKDEKSMRDAIEGMNGQELDGRNITVNEAQSR 85
>GRP2_SINAL (P49311) Glycine-rich RNA-binding protein GRP2A| Length = 169 Score = 60.5 bits (145), Expect = 4e-09 Identities = 26/51 (50%), Positives = 41/51 (80%) Frame = +3 Query: 45 TQVVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPR 197 ++++ +R+TGRSRGFGFVTF + +++ AI M+ +LDGR+I+VN+AQ R Sbjct: 37 SKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEAQSR 87
>GRP1_SINAL (P49310) Glycine-rich RNA-binding protein GRP1A| Length = 166 Score = 60.5 bits (145), Expect = 4e-09 Identities = 26/51 (50%), Positives = 41/51 (80%) Frame = +3 Query: 45 TQVVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPR 197 ++++ +R+TGRSRGFGFVTF + +++ AI M+ +LDGR+I+VN+AQ R Sbjct: 37 SKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEAQSR 87
>GRP1_SORBI (Q99069) Glycine-rich RNA-binding protein 1 (Fragment)| Length = 142 Score = 58.5 bits (140), Expect = 1e-08 Identities = 28/51 (54%), Positives = 38/51 (74%) Frame = +3 Query: 45 TQVVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPR 197 ++++ +R+T RSRGFGFVTFS A+ AI M+ ELDGR I+VN+AQ R Sbjct: 16 SKIILDRETQRSRGFGFVTFSTEEAMRSAIEGMNGKELDGRNITVNEAQSR 66
>GRP2_ARATH (Q9SVM8) Glycine-rich RNA-binding protein 2, mitochondrial| precursor (AtGRP2) Length = 158 Score = 55.5 bits (132), Expect = 1e-07 Identities = 27/50 (54%), Positives = 34/50 (68%) Frame = +3 Query: 48 QVVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPR 197 +V+ +R+TGRSRGFGFV F++ A AI EM EL+GR I VN A R Sbjct: 65 KVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDR 114
>ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast precursor (CP29B)| Length = 291 Score = 55.1 bits (131), Expect = 1e-07 Identities = 28/62 (45%), Positives = 40/62 (64%) Frame = +3 Query: 12 ELXXXXXXXXXTQVVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQ 191 EL +VV +RD+GRSRGFGFVT+S + V+ AI ++ +LDGR+I V+ A+ Sbjct: 225 ELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAAE 284 Query: 192 PR 197 R Sbjct: 285 ER 286 Score = 47.4 bits (111), Expect = 3e-05 Identities = 22/45 (48%), Positives = 31/45 (68%) Frame = +3 Query: 48 QVVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVN 182 +V+ ++ TGRSRGFGFVT S V+ A ++ + E+DGR I VN Sbjct: 117 EVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVN 161
>NUCL_CHICK (P15771) Nucleolin (Protein C23)| Length = 694 Score = 54.7 bits (130), Expect = 2e-07 Identities = 23/50 (46%), Positives = 35/50 (70%) Frame = +3 Query: 48 QVVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPR 197 ++VT+RDTG S+GFGFV FS P A M +GE+DG ++++ A+P+ Sbjct: 580 RIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAMEDGEIDGNKVTLDFAKPK 629
>ROC2_NICPL (P49314) 31 kDa ribonucleoprotein, chloroplast precursor (CP-RBP31)| Length = 292 Score = 54.7 bits (130), Expect = 2e-07 Identities = 28/62 (45%), Positives = 40/62 (64%) Frame = +3 Query: 12 ELXXXXXXXXXTQVVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQ 191 EL +VV +RD+GRSRGFGFVT+S + V+ AI ++ +LDGR+I V+ A+ Sbjct: 226 ELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAAE 285 Query: 192 PR 197 R Sbjct: 286 ER 287 Score = 45.8 bits (107), Expect = 9e-05 Identities = 21/45 (46%), Positives = 31/45 (68%) Frame = +3 Query: 48 QVVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVN 182 +V+ ++ +GRSRGFGFVT S V+ A ++ + E+DGR I VN Sbjct: 118 EVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVN 162
>ROC2_ARATH (Q43349) 29 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein cp29) Length = 342 Score = 53.5 bits (127), Expect = 4e-07 Identities = 24/50 (48%), Positives = 36/50 (72%) Frame = +3 Query: 48 QVVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPR 197 +V+ +RD+GRS+GFGFVT S + V AI ++ +LDGR I V++A+ R Sbjct: 287 RVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEAR 336 Score = 46.6 bits (109), Expect = 5e-05 Identities = 21/49 (42%), Positives = 31/49 (63%) Frame = +3 Query: 48 QVVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQP 194 +V+ ++ TGRSRGFGFVT S V+ A ++ + E +GR + VN P Sbjct: 129 EVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPP 177
>ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precursor (28RNP)| Length = 276 Score = 53.1 bits (126), Expect = 6e-07 Identities = 27/54 (50%), Positives = 34/54 (62%) Frame = +3 Query: 48 QVVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPRVNSN 209 +VV +R++GRSRGFGFVT S + AI + LDGRTI VN A+ R N Sbjct: 221 RVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAAEERPRRN 274 Score = 50.1 bits (118), Expect = 5e-06 Identities = 24/50 (48%), Positives = 32/50 (64%) Frame = +3 Query: 48 QVVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPR 197 +V+ R+T RSRGFGFVT S D A+ +L+GR ++VNKA PR Sbjct: 127 EVIYNRETDRSRGFGFVTMSTVEEADKAVELYSQYDLNGRLLTVNKAAPR 176
>ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor| Length = 315 Score = 53.1 bits (126), Expect = 6e-07 Identities = 27/54 (50%), Positives = 34/54 (62%) Frame = +3 Query: 48 QVVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPRVNSN 209 +VV +R+TGRSRGFGFVT + + AI + LDGRTI VN A+ R N Sbjct: 260 RVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVAEDRSRRN 313 Score = 45.1 bits (105), Expect = 2e-04 Identities = 21/50 (42%), Positives = 32/50 (64%) Frame = +3 Query: 48 QVVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPR 197 +V+ RDT +SRGFGFVT S + A+ + +++GR ++VNKA R Sbjct: 166 EVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLTVNKAARR 215
>ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloroplast| precursor Length = 289 Score = 52.8 bits (125), Expect = 7e-07 Identities = 23/50 (46%), Positives = 36/50 (72%) Frame = +3 Query: 48 QVVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPR 197 +V+ +RD+GRS+GFGFVT+ + V AI+ + +LDGR I V++A+ R Sbjct: 234 RVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEAR 283 Score = 50.1 bits (118), Expect = 5e-06 Identities = 24/55 (43%), Positives = 33/55 (60%) Frame = +3 Query: 48 QVVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPRVNSND 212 +V+ ++ TGRSRGFGFVT S V+ A ++ + ELDGR + VN P D Sbjct: 121 EVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKRED 175
>RBM3_HUMAN (P98179) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) (RNPL) Length = 157 Score = 52.8 bits (125), Expect = 7e-07 Identities = 25/46 (54%), Positives = 32/46 (69%) Frame = +3 Query: 51 VVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKA 188 VV +R+T RSRGFGF+TF+ P VA+R M+ LDGR I V+ A Sbjct: 37 VVKDRETQRSRGFGFITFTNPEHASVAMRAMNGESLDGRQIRVDHA 82
>ROC1_SPIOL (P28644) 28 kDa ribonucleoprotein, chloroplast (28RNP)| Length = 233 Score = 52.8 bits (125), Expect = 7e-07 Identities = 26/50 (52%), Positives = 34/50 (68%) Frame = +3 Query: 48 QVVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPR 197 +VV++R+TGRSRGFGFVT S V+ AI + LDGR + VN A+ R Sbjct: 179 RVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVAEER 228 Score = 51.6 bits (122), Expect = 2e-06 Identities = 23/50 (46%), Positives = 34/50 (68%) Frame = +3 Query: 48 QVVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPR 197 +V+ R+T RSRGFGFVT S + A+ ++ ++DGR ++VNKA PR Sbjct: 85 EVIYNRETDRSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVNKAAPR 134
>NUCL_XENLA (P20397) Nucleolin (Protein C23)| Length = 650 Score = 52.0 bits (123), Expect = 1e-06 Identities = 23/53 (43%), Positives = 36/53 (67%) Frame = +3 Query: 48 QVVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPRVNS 206 ++VT+RDTG S+GFGFV FS A M +GE+DG ++++ A+P+ +S Sbjct: 529 RIVTDRDTGASKGFGFVDFSTAEDAKAAKEAMEDGEIDGNKVTLDFAKPKGDS 581 Score = 33.9 bits (76), Expect = 0.36 Identities = 15/49 (30%), Positives = 28/49 (57%) Frame = +3 Query: 45 TQVVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQ 191 T + ++ GR++GF F+ FS A+ +N E++GR+I + +Q Sbjct: 438 TSIRIPQNQGRAKGFAFIEFSSAEDAKDAMDSCNNTEIEGRSIRLEFSQ 486
>ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast precursor (CP29A)| Length = 273 Score = 51.6 bits (122), Expect = 2e-06 Identities = 25/50 (50%), Positives = 35/50 (70%) Frame = +3 Query: 48 QVVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPR 197 +VV +RD+GRSRGFGFVT+S V+ AI + +L+GR I V+ A+ R Sbjct: 218 KVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEAR 267 Score = 51.2 bits (121), Expect = 2e-06 Identities = 25/61 (40%), Positives = 34/61 (55%) Frame = +3 Query: 12 ELXXXXXXXXXTQVVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQ 191 EL +V+ ++ TGRSRGFGFVT S V+ A ++ + ELDGR + VN Sbjct: 105 ELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGP 164 Query: 192 P 194 P Sbjct: 165 P 165
>ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precursor (CP-RBP30)| Length = 279 Score = 51.6 bits (122), Expect = 2e-06 Identities = 25/50 (50%), Positives = 35/50 (70%) Frame = +3 Query: 48 QVVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPR 197 +VV +RD+GRSRGFGFVT+S V+ AI + +L+GR I V+ A+ R Sbjct: 224 KVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEAR 273 Score = 51.2 bits (121), Expect = 2e-06 Identities = 25/61 (40%), Positives = 34/61 (55%) Frame = +3 Query: 12 ELXXXXXXXXXTQVVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQ 191 EL +V+ ++ TGRSRGFGFVT S V+ A ++ + ELDGR + VN Sbjct: 105 ELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGP 164 Query: 192 P 194 P Sbjct: 165 P 165
>ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33) (RNA-binding protein cp31) Length = 329 Score = 50.1 bits (118), Expect = 5e-06 Identities = 25/50 (50%), Positives = 34/50 (68%) Frame = +3 Query: 48 QVVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPR 197 +VV +R+TGRSRGFGFVT S+ ++ AI + L+GR I VN A+ R Sbjct: 274 RVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEER 323 Score = 50.1 bits (118), Expect = 5e-06 Identities = 22/50 (44%), Positives = 34/50 (68%) Frame = +3 Query: 48 QVVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPR 197 +V+ R+T +SRGFGFVT S + A+ + + +L+GR ++VNKA PR Sbjct: 180 EVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPR 229
>RBM3_MOUSE (O89086) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) Length = 153 Score = 50.1 bits (118), Expect = 5e-06 Identities = 24/46 (52%), Positives = 31/46 (67%) Frame = +3 Query: 51 VVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKA 188 VV +R+T RSRGFGF+TF+ P A+R M+ LDGR I V+ A Sbjct: 37 VVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDGRQIRVDHA 82
>ROC5_NICSY (P19684) 33 kDa ribonucleoprotein, chloroplast precursor| Length = 324 Score = 49.3 bits (116), Expect = 8e-06 Identities = 22/47 (46%), Positives = 34/47 (72%) Frame = +3 Query: 48 QVVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKA 188 +V+ +R +GRSRGFGF+TFS A++ A+ M+ EL+GR + +N A Sbjct: 247 KVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEGRPLRLNVA 293 Score = 40.0 bits (92), Expect = 0.005 Identities = 20/57 (35%), Positives = 27/57 (47%) Frame = +3 Query: 12 ELXXXXXXXXXTQVVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVN 182 E+ ++V +R T RSRGF FVT AIR ++ GRT+ VN Sbjct: 132 EIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLFDGSQVGGRTVKVN 188
>NUCL_MESAU (P08199) Nucleolin (Protein C23)| Length = 713 Score = 48.9 bits (115), Expect = 1e-05 Identities = 20/50 (40%), Positives = 34/50 (68%) Frame = +3 Query: 48 QVVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPR 197 ++VT+R+TG S+GFGFV F+ A M +GE+DG ++++ A+P+ Sbjct: 598 RIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPK 647 Score = 33.5 bits (75), Expect = 0.47 Identities = 15/52 (28%), Positives = 27/52 (51%) Frame = +3 Query: 54 VTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPRVNSN 209 V + G+S+G+ F+ F+ A+ + E++GRTI + PR + N Sbjct: 513 VPQNQQGKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGPRGSPN 564 Score = 29.3 bits (64), Expect = 8.8 Identities = 10/36 (27%), Positives = 20/36 (55%) Frame = +3 Query: 72 GRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISV 179 G+S+G ++ F + + E E+DGR++S+ Sbjct: 426 GKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSL 461
>NUCL_HUMAN (P19338) Nucleolin (Protein C23)| Length = 709 Score = 48.9 bits (115), Expect = 1e-05 Identities = 20/50 (40%), Positives = 34/50 (68%) Frame = +3 Query: 48 QVVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPR 197 ++VT+R+TG S+GFGFV F+ A M +GE+DG ++++ A+P+ Sbjct: 598 RIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPK 647 Score = 32.3 bits (72), Expect = 1.0 Identities = 14/52 (26%), Positives = 26/52 (50%) Frame = +3 Query: 54 VTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPRVNSN 209 V + G+S+G+ F+ F+ A+ + E++GR I + PR + N Sbjct: 513 VPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPN 564
>NUCL_MOUSE (P09405) Nucleolin (Protein C23)| Length = 706 Score = 48.9 bits (115), Expect = 1e-05 Identities = 20/50 (40%), Positives = 34/50 (68%) Frame = +3 Query: 48 QVVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPR 197 ++VT+R+TG S+GFGFV F+ A M +GE+DG ++++ A+P+ Sbjct: 595 RIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPK 644 Score = 29.3 bits (64), Expect = 8.8 Identities = 10/36 (27%), Positives = 20/36 (55%) Frame = +3 Query: 72 GRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISV 179 G+S+G ++ F + + E E+DGR++S+ Sbjct: 427 GKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSL 462
>NUCL_RAT (P13383) Nucleolin (Protein C23)| Length = 712 Score = 48.9 bits (115), Expect = 1e-05 Identities = 20/50 (40%), Positives = 34/50 (68%) Frame = +3 Query: 48 QVVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPR 197 ++VT+R+TG S+GFGFV F+ A M +GE+DG ++++ A+P+ Sbjct: 601 RIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPK 650 Score = 32.7 bits (73), Expect = 0.80 Identities = 15/52 (28%), Positives = 27/52 (51%) Frame = +3 Query: 54 VTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPRVNSN 209 V + G+S+G+ F+ F+ A+ + E++GRTI + PR + N Sbjct: 516 VPQNPHGKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGPRGSPN 567 Score = 30.4 bits (67), Expect = 4.0 Identities = 11/36 (30%), Positives = 20/36 (55%) Frame = +3 Query: 72 GRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISV 179 GRS+G ++ F + + E E+DGR++S+ Sbjct: 429 GRSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSL 464
>NUCL_PONPY (Q5RF26) Nucleolin| Length = 711 Score = 48.9 bits (115), Expect = 1e-05 Identities = 20/50 (40%), Positives = 34/50 (68%) Frame = +3 Query: 48 QVVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPR 197 ++VT+R+TG S+GFGFV F+ A M +GE+DG ++++ A+P+ Sbjct: 600 RIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPK 649 Score = 32.3 bits (72), Expect = 1.0 Identities = 14/52 (26%), Positives = 26/52 (50%) Frame = +3 Query: 54 VTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPRVNSN 209 V + G+S+G+ F+ F+ A+ + E++GR I + PR + N Sbjct: 515 VPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPN 566
>NUCL_MACFA (Q4R4J7) Nucleolin| Length = 710 Score = 48.9 bits (115), Expect = 1e-05 Identities = 20/50 (40%), Positives = 34/50 (68%) Frame = +3 Query: 48 QVVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPR 197 ++VT+R+TG S+GFGFV F+ A M +GE+DG ++++ A+P+ Sbjct: 599 RIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPK 648 Score = 32.3 bits (72), Expect = 1.0 Identities = 14/52 (26%), Positives = 26/52 (50%) Frame = +3 Query: 54 VTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPRVNSN 209 V + G+S+G+ F+ F+ A+ + E++GR I + PR + N Sbjct: 514 VPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPN 565
>RBPA_SYNY3 (Q57014) Putative RNA-binding protein rbpA| Length = 101 Score = 48.5 bits (114), Expect = 1e-05 Identities = 24/52 (46%), Positives = 30/52 (57%) Frame = +3 Query: 48 QVVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPRVN 203 Q+ T+R+TGR RGFGFV AI + E GR + VNKA+PR N Sbjct: 31 QLPTDRETGRMRGFGFVELEADAEETAAIEALDGAEWMGRDLKVNKAKPREN 82
>EPAB_XENTR (Q6DEY7) Embryonic polyadenylate-binding protein (Embryonic poly(A)| binding protein) (ePABP) Length = 629 Score = 48.1 bits (113), Expect = 2e-05 Identities = 22/45 (48%), Positives = 29/45 (64%) Frame = +3 Query: 66 DTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPRV 200 DTGRSRGFGFV + A+ EM+ E++GR I V +AQ R+ Sbjct: 226 DTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRI 270 Score = 33.1 bits (74), Expect = 0.61 Identities = 19/48 (39%), Positives = 27/48 (56%) Frame = +3 Query: 48 QVVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQ 191 +V+TE G S+GFGFV FS P A+ EM+ + + + V AQ Sbjct: 324 KVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQ 369
>LARK_DROME (Q94901) RNA-binding protein lark| Length = 352 Score = 48.1 bits (113), Expect = 2e-05 Identities = 30/106 (28%), Positives = 42/106 (39%), Gaps = 2/106 (1%) Frame = +3 Query: 81 RGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPRVNSNDXXXXXXXXXXXXXXXX 260 R +GFV V AI+E++ +DG+ + V + RV Sbjct: 119 RNYGFVHLDCVGDVQDAIKELNGRVVDGQPLKVQVSTSRVRPK----------------- 161 Query: 261 XXXXXXDIVPAASD--DCFKCGRPGHWARECPYSVGGRPGRYSPPS 392 P D C++CGR GHW++ECP G G PPS Sbjct: 162 ---------PGMGDPEQCYRCGRSGHWSKECPRLYGSAGGGREPPS 198
>CNBP_CHICK (O42395) Cellular nucleic acid-binding protein (CNBP) (Zinc finger| protein 9) Length = 172 Score = 47.0 bits (110), Expect = 4e-05 Identities = 18/30 (60%), Positives = 22/30 (73%) Frame = +3 Query: 294 ASDDCFKCGRPGHWARECPYSVGGRPGRYS 383 +S++CFKCGR GHWARECP +G G S Sbjct: 2 SSNECFKCGRTGHWARECPTGIGRGRGMRS 31 Score = 31.6 bits (70), Expect = 1.8 Identities = 9/17 (52%), Positives = 14/17 (82%) Frame = +3 Query: 306 CFKCGRPGHWARECPYS 356 C+ CG+PGH AR+C ++ Sbjct: 93 CYNCGKPGHLARDCDHA 109 Score = 29.3 bits (64), Expect = 8.8 Identities = 9/15 (60%), Positives = 12/15 (80%) Frame = +3 Query: 303 DCFKCGRPGHWAREC 347 +C++CG GH AREC Sbjct: 152 NCYRCGESGHLAREC 166
>EPABA_XENLA (Q98SP8) Embryonic polyadenylate-binding protein-A (Embryonic| poly(A) binding protein-A) (ePABP-A) (ePAB-A) (XePABP-A) Length = 629 Score = 46.6 bits (109), Expect = 5e-05 Identities = 21/45 (46%), Positives = 29/45 (64%) Frame = +3 Query: 66 DTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPRV 200 D+GRSRGFGFV + A+ EM+ E++GR I V +AQ R+ Sbjct: 226 DSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRI 270 Score = 33.1 bits (74), Expect = 0.61 Identities = 19/48 (39%), Positives = 27/48 (56%) Frame = +3 Query: 48 QVVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQ 191 +V+TE G S+GFGFV FS P A+ EM+ + + + V AQ Sbjct: 324 KVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQ 369
>MSI2H_MOUSE (Q920Q6) RNA-binding protein Musashi homolog 2 (Musashi-2)| Length = 346 Score = 46.6 bits (109), Expect = 5e-05 Identities = 24/49 (48%), Positives = 33/49 (67%) Frame = +3 Query: 51 VVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPR 197 V+ + T RSRGFGFVTF++P +VD + + H+ ELD +TI A PR Sbjct: 52 VMRDPTTKRSRGFGFVTFADPASVDKVLGQPHH-ELDSKTIDPKVAFPR 99 Score = 38.9 bits (89), Expect = 0.011 Identities = 18/46 (39%), Positives = 28/46 (60%) Frame = +3 Query: 60 ERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPR 197 ++ T R RGFGFVTF V+ + E+H E++ + + KAQP+ Sbjct: 144 DKTTNRHRGFGFVTFENEDVVE-KVCEIHFHEINNKMVECKKAQPK 188
>MSI2H_HUMAN (Q96DH6) RNA-binding protein Musashi homolog 2 (Musashi-2)| Length = 328 Score = 46.6 bits (109), Expect = 5e-05 Identities = 24/49 (48%), Positives = 33/49 (67%) Frame = +3 Query: 51 VVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPR 197 V+ + T RSRGFGFVTF++P +VD + + H+ ELD +TI A PR Sbjct: 52 VMRDPTTKRSRGFGFVTFADPASVDKVLGQPHH-ELDSKTIDPKVAFPR 99 Score = 38.9 bits (89), Expect = 0.011 Identities = 18/46 (39%), Positives = 28/46 (60%) Frame = +3 Query: 60 ERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPR 197 ++ T R RGFGFVTF V+ + E+H E++ + + KAQP+ Sbjct: 144 DKTTNRHRGFGFVTFENEDVVE-KVCEIHFHEINNKMVECKKAQPK 188
>CNBP_RAT (P62634) Cellular nucleic acid-binding protein (CNBP) (Zinc finger| protein 9) Length = 177 Score = 46.2 bits (108), Expect = 7e-05 Identities = 19/28 (67%), Positives = 22/28 (78%) Frame = +3 Query: 294 ASDDCFKCGRPGHWARECPYSVGGRPGR 377 +S++CFKCGR GHWARECP GG GR Sbjct: 2 SSNECFKCGRSGHWARECP--TGGGRGR 27 Score = 31.6 bits (70), Expect = 1.8 Identities = 9/17 (52%), Positives = 14/17 (82%) Frame = +3 Query: 306 CFKCGRPGHWARECPYS 356 C+ CG+PGH AR+C ++ Sbjct: 98 CYNCGKPGHLARDCDHA 114 Score = 29.3 bits (64), Expect = 8.8 Identities = 9/15 (60%), Positives = 12/15 (80%) Frame = +3 Query: 303 DCFKCGRPGHWAREC 347 +C++CG GH AREC Sbjct: 157 NCYRCGESGHLAREC 171
>CNBP_PONPY (Q5R5R5) Cellular nucleic acid-binding protein (CNBP) (Zinc finger| protein 9) Length = 177 Score = 46.2 bits (108), Expect = 7e-05 Identities = 19/28 (67%), Positives = 22/28 (78%) Frame = +3 Query: 294 ASDDCFKCGRPGHWARECPYSVGGRPGR 377 +S++CFKCGR GHWARECP GG GR Sbjct: 2 SSNECFKCGRSGHWARECP--TGGGRGR 27 Score = 31.6 bits (70), Expect = 1.8 Identities = 9/17 (52%), Positives = 14/17 (82%) Frame = +3 Query: 306 CFKCGRPGHWARECPYS 356 C+ CG+PGH AR+C ++ Sbjct: 98 CYNCGKPGHLARDCDHA 114 Score = 29.3 bits (64), Expect = 8.8 Identities = 9/15 (60%), Positives = 12/15 (80%) Frame = +3 Query: 303 DCFKCGRPGHWAREC 347 +C++CG GH AREC Sbjct: 157 NCYRCGESGHLAREC 171
>CNBP_HUMAN (P62633) Cellular nucleic acid-binding protein (CNBP) (Zinc finger| protein 9) Length = 177 Score = 46.2 bits (108), Expect = 7e-05 Identities = 19/28 (67%), Positives = 22/28 (78%) Frame = +3 Query: 294 ASDDCFKCGRPGHWARECPYSVGGRPGR 377 +S++CFKCGR GHWARECP GG GR Sbjct: 2 SSNECFKCGRSGHWARECP--TGGGRGR 27 Score = 31.6 bits (70), Expect = 1.8 Identities = 9/17 (52%), Positives = 14/17 (82%) Frame = +3 Query: 306 CFKCGRPGHWARECPYS 356 C+ CG+PGH AR+C ++ Sbjct: 98 CYNCGKPGHLARDCDHA 114 Score = 29.3 bits (64), Expect = 8.8 Identities = 9/15 (60%), Positives = 12/15 (80%) Frame = +3 Query: 303 DCFKCGRPGHWAREC 347 +C++CG GH AREC Sbjct: 157 NCYRCGESGHLAREC 171
>CNBP_MOUSE (P53996) Cellular nucleic acid-binding protein (CNBP) (Zinc finger| protein 9) Length = 178 Score = 46.2 bits (108), Expect = 7e-05 Identities = 19/28 (67%), Positives = 22/28 (78%) Frame = +3 Query: 294 ASDDCFKCGRPGHWARECPYSVGGRPGR 377 +S++CFKCGR GHWARECP GG GR Sbjct: 2 SSNECFKCGRSGHWARECP--TGGGRGR 27 Score = 31.6 bits (70), Expect = 1.8 Identities = 9/17 (52%), Positives = 14/17 (82%) Frame = +3 Query: 306 CFKCGRPGHWARECPYS 356 C+ CG+PGH AR+C ++ Sbjct: 99 CYNCGKPGHLARDCDHA 115 Score = 29.3 bits (64), Expect = 8.8 Identities = 9/15 (60%), Positives = 12/15 (80%) Frame = +3 Query: 303 DCFKCGRPGHWAREC 347 +C++CG GH AREC Sbjct: 158 NCYRCGESGHLAREC 172
>HRP1_YEAST (Q99383) Nuclear polyadenylated RNA-binding protein 4 (Cleavage| factor IB) (CFIB) Length = 534 Score = 45.4 bits (106), Expect = 1e-04 Identities = 21/50 (42%), Positives = 33/50 (66%) Frame = +3 Query: 48 QVVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPR 197 +++ + TGRSRGFGF++F +P +VD ++ H LDG+ I +A PR Sbjct: 189 KIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQH--ILDGKVIDPKRAIPR 236 Score = 42.4 bits (98), Expect = 0.001 Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 2/52 (3%) Frame = +3 Query: 48 QVVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELD--GRTISVNKAQPR 197 Q++ ++DTG+SRGFGFVT+ AVD R N +D R I + +A+PR Sbjct: 273 QLMLDKDTGQSRGFGFVTYDSADAVD---RVCQNKFIDFKDRKIEIKRAEPR 321
>ROA1_CAEEL (Q22037) Heterogeneous nuclear ribonucleoprotein A1| Length = 346 Score = 45.4 bits (106), Expect = 1e-04 Identities = 25/57 (43%), Positives = 36/57 (63%), Gaps = 2/57 (3%) Frame = +3 Query: 45 TQVVTERD--TGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPRVNSN 209 T ++ RD T RSRGFGFVTFS VD A+++ + +DG+T+ +A PR + N Sbjct: 50 TDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQRPH-IIDGKTVDPKRAVPRDDKN 105 Score = 30.8 bits (68), Expect = 3.0 Identities = 11/30 (36%), Positives = 21/30 (70%) Frame = +3 Query: 45 TQVVTERDTGRSRGFGFVTFSEPRAVDVAI 134 ++++ ++ T + RGFGFVTF + +VD + Sbjct: 143 SEIILDKATQKPRGFGFVTFDDHDSVDQCV 172
>RT19_ARATH (P39697) 40S ribosomal protein S19, mitochondrial precursor| Length = 212 Score = 45.1 bits (105), Expect = 2e-04 Identities = 23/48 (47%), Positives = 32/48 (66%) Frame = +3 Query: 48 QVVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQ 191 +V+T + TGRSRG+GFV F + + AI M+ EL+G ISVN A+ Sbjct: 61 RVMTNKVTGRSRGYGFVNFISEDSANSAISAMNGQELNGFNISVNVAK 108
>NSR1_YEAST (P27476) Nuclear localization sequence-binding protein (P67)| Length = 414 Score = 44.7 bits (104), Expect = 2e-04 Identities = 21/55 (38%), Positives = 33/55 (60%) Frame = +3 Query: 48 QVVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPRVNSND 212 +V+ ER T RSRG+G+V F + AI+EM E+DGR I+ + + + N+ Sbjct: 198 RVIYERGTDRSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNN 252 Score = 33.1 bits (74), Expect = 0.61 Identities = 16/66 (24%), Positives = 31/66 (46%) Frame = +3 Query: 12 ELXXXXXXXXXTQVVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQ 191 EL ++ T +T + +GFG+V FS A+ + +D R + ++ + Sbjct: 285 ELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLDFSS 344 Query: 192 PRVNSN 209 PR N++ Sbjct: 345 PRPNND 350
>HNRPG_HUMAN (P38159) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) (Glycoprotein p43) Length = 391 Score = 44.7 bits (104), Expect = 2e-04 Identities = 20/46 (43%), Positives = 29/46 (63%) Frame = +3 Query: 51 VVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKA 188 ++ +R+T +SRGF FVTF P A R+M+ LDG+ I V +A Sbjct: 39 LMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQA 84
>RRP2_SPIOL (P82277) Plastid-specific 30S ribosomal protein 2, chloroplast| precursor (PSRP-2) Length = 260 Score = 44.3 bits (103), Expect = 3e-04 Identities = 20/40 (50%), Positives = 28/40 (70%) Frame = +3 Query: 69 TGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKA 188 T +S GFGFV+FS V+ AI+ ++N L+G+ I VNKA Sbjct: 221 TSKSNGFGFVSFSSEEEVEAAIQALNNSVLEGQKIRVNKA 260 Score = 37.7 bits (86), Expect = 0.025 Identities = 18/55 (32%), Positives = 31/55 (56%) Frame = +3 Query: 48 QVVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPRVNSND 212 +V+ ++ +GRSR FGFVT + I ++++ E+ GR I VN + + D Sbjct: 114 EVMYDKYSGRSRRFGFVTMKTVEDANAVIEKLNDTEIGGRKIKVNITEKPLEGMD 168
>EPABB_XENLA (Q6GR16) Embryonic polyadenylate-binding protein-B (Embryonic| poly(A) binding protein-B) (ePABP-B) (ePAB-B) (XePABP-B) Length = 629 Score = 44.3 bits (103), Expect = 3e-04 Identities = 19/45 (42%), Positives = 29/45 (64%) Frame = +3 Query: 66 DTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPRV 200 ++GRSRGFGFV + A+ EM+ E++GR + V +AQ R+ Sbjct: 226 NSGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRAQKRI 270 Score = 35.0 bits (79), Expect = 0.16 Identities = 20/49 (40%), Positives = 28/49 (57%) Frame = +3 Query: 45 TQVVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQ 191 T+V+TE G S+GFGFV FS P A+ EM+ + + + V AQ Sbjct: 323 TKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQ 369
>RNPC2_MOUSE (Q8VH51) RNA-binding region-containing protein 2 (Coactivator of| activating protein 1 and estrogen receptors) (Coactivator of AP-1 and ERs) (Transcription coactivator CAPER) Length = 530 Score = 44.3 bits (103), Expect = 3e-04 Identities = 18/54 (33%), Positives = 34/54 (62%) Frame = +3 Query: 48 QVVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPRVNSN 209 Q++ + +TGRS+G+GF+TFS+ A+ +++ EL GR + V R +++ Sbjct: 280 QLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDAS 333
>RNPC2_HUMAN (Q14498) RNA-binding region-containing protein 2 (Hepatocellular| carcinoma protein 1) (Splicing factor HCC1) Length = 530 Score = 44.3 bits (103), Expect = 3e-04 Identities = 18/54 (33%), Positives = 34/54 (62%) Frame = +3 Query: 48 QVVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPRVNSN 209 Q++ + +TGRS+G+GF+TFS+ A+ +++ EL GR + V R +++ Sbjct: 280 QLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDAS 333
>DAZP1_MOUSE (Q9JII5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 406 Score = 43.9 bits (102), Expect = 3e-04 Identities = 19/53 (35%), Positives = 35/53 (66%) Frame = +3 Query: 51 VVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPRVNSN 209 ++ + + R RGFGF+TF + ++VD A+ MH ++ G+ + V +A+PR + N Sbjct: 144 MIYDAEKQRPRGFGFITFEDEQSVDQAV-NMHFHDIMGKKVEVKRAEPRDSKN 195 Score = 37.4 bits (85), Expect = 0.032 Identities = 18/49 (36%), Positives = 26/49 (53%) Frame = +3 Query: 51 VVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPR 197 ++ ++ T +SRGFGFV F +P V + + LDGR I PR Sbjct: 41 IMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPH-TLDGRNIDPKPCTPR 88
>RNPC1_MOUSE (Q62176) RNA-binding region-containing protein 1 (ssDNA binding| protein SEB4) Length = 237 Score = 43.9 bits (102), Expect = 3e-04 Identities = 22/46 (47%), Positives = 32/46 (69%) Frame = +3 Query: 51 VVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKA 188 V+T+R TG+SRG+GFVT ++ A D A ++ N +DGR +VN A Sbjct: 63 VITDRQTGKSRGYGFVTMADRAAADRACKD-PNPIIDGRKANVNLA 107
>PABP1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 43.5 bits (101), Expect = 5e-04 Identities = 23/63 (36%), Positives = 37/63 (58%) Frame = +3 Query: 12 ELXXXXXXXXXTQVVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQ 191 EL +V+T+ ++G+S+GFGFV+F A+ EM+ EL+G+ I V +AQ Sbjct: 209 ELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQ 267 Query: 192 PRV 200 +V Sbjct: 268 KKV 270 Score = 33.9 bits (76), Expect = 0.36 Identities = 17/40 (42%), Positives = 23/40 (57%) Frame = +3 Query: 72 GRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQ 191 GRS+GFGFV FS P A+ EM+ + + + V AQ Sbjct: 330 GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369 Score = 30.0 bits (66), Expect = 5.2 Identities = 15/44 (34%), Positives = 24/44 (54%) Frame = +3 Query: 66 DTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPR 197 D S+G+GFV F A + AI +M+ L+ R + V + + R Sbjct: 133 DENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
>PABP1_MOUSE (P29341) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 43.5 bits (101), Expect = 5e-04 Identities = 23/63 (36%), Positives = 37/63 (58%) Frame = +3 Query: 12 ELXXXXXXXXXTQVVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQ 191 EL +V+T+ ++G+S+GFGFV+F A+ EM+ EL+G+ I V +AQ Sbjct: 209 ELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQ 267 Query: 192 PRV 200 +V Sbjct: 268 KKV 270 Score = 33.9 bits (76), Expect = 0.36 Identities = 17/40 (42%), Positives = 23/40 (57%) Frame = +3 Query: 72 GRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQ 191 GRS+GFGFV FS P A+ EM+ + + + V AQ Sbjct: 330 GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
>RB27C_DROME (P48809) Heterogeneous nuclear ribonucleoprotein 27C (Hrb27-C)| (hnRNP 48) (HRP48.1) Length = 421 Score = 43.5 bits (101), Expect = 5e-04 Identities = 24/51 (47%), Positives = 31/51 (60%), Gaps = 2/51 (3%) Frame = +3 Query: 51 VVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNG--ELDGRTISVNKAQPR 197 V+ ++GRSRGFGFVTF++P V+ + NG LDGRTI PR Sbjct: 38 VMKNNESGRSRGFGFVTFADPTNVN---HVLQNGPHTLDGRTIDPKPCNPR 85 Score = 37.7 bits (86), Expect = 0.025 Identities = 17/52 (32%), Positives = 33/52 (63%) Frame = +3 Query: 51 VVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPRVNS 206 ++ +++ +SRGFGF++F E +V+ E + L+G+ + + KA+PR S Sbjct: 127 IMYDQEKKKSRGFGFLSFEEESSVEHVTNERYI-NLNGKQVEIKKAEPRDGS 177
>PABP1_HUMAN (P11940) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 43.1 bits (100), Expect = 6e-04 Identities = 21/51 (41%), Positives = 35/51 (68%) Frame = +3 Query: 48 QVVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPRV 200 +V+T+ ++G+S+GFGFV+F A+ EM+ EL+G+ I V +AQ +V Sbjct: 221 KVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV 270 Score = 33.9 bits (76), Expect = 0.36 Identities = 17/40 (42%), Positives = 23/40 (57%) Frame = +3 Query: 72 GRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQ 191 GRS+GFGFV FS P A+ EM+ + + + V AQ Sbjct: 330 GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369 Score = 30.0 bits (66), Expect = 5.2 Identities = 15/44 (34%), Positives = 24/44 (54%) Frame = +3 Query: 66 DTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPR 197 D S+G+GFV F A + AI +M+ L+ R + V + + R Sbjct: 133 DENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
>PABP1_BOVIN (P61286) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 43.1 bits (100), Expect = 6e-04 Identities = 21/51 (41%), Positives = 35/51 (68%) Frame = +3 Query: 48 QVVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPRV 200 +V+T+ ++G+S+GFGFV+F A+ EM+ EL+G+ I V +AQ +V Sbjct: 221 KVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV 270 Score = 33.9 bits (76), Expect = 0.36 Identities = 17/40 (42%), Positives = 23/40 (57%) Frame = +3 Query: 72 GRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQ 191 GRS+GFGFV FS P A+ EM+ + + + V AQ Sbjct: 330 GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369 Score = 30.0 bits (66), Expect = 5.2 Identities = 15/44 (34%), Positives = 24/44 (54%) Frame = +3 Query: 66 DTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPR 197 D S+G+GFV F A + AI +M+ L+ R + V + + R Sbjct: 133 DENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
>GAR2_SCHPO (P41891) Protein gar2| Length = 500 Score = 43.1 bits (100), Expect = 6e-04 Identities = 17/50 (34%), Positives = 31/50 (62%) Frame = +3 Query: 48 QVVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPR 197 +V+ + +GRS+G+G+V F P A A+ E+DGR ++++ + PR Sbjct: 293 RVIMDGQSGRSKGYGYVDFETPEAAKAAVAANGTKEIDGRMVNLDLSNPR 342 Score = 30.8 bits (68), Expect = 3.0 Identities = 16/47 (34%), Positives = 28/47 (59%) Frame = +3 Query: 57 TERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPR 197 T+ +GR +GFG+VTFS+ + + EM+ + GR ++ + PR Sbjct: 399 TDPQSGRLKGFGYVTFSDIDSAKKCV-EMNGHFIAGRPCRLDFSTPR 444
>FOX1_CAEEL (Q10572) Sex determination protein fox-1 (Feminizing locus on X| protein 1) Length = 415 Score = 43.1 bits (100), Expect = 6e-04 Identities = 20/43 (46%), Positives = 28/43 (65%) Frame = +3 Query: 78 SRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPRVNS 206 S+GFGFVT P+ + A +E+H ++GR I VN A RV+S Sbjct: 191 SKGFGFVTMERPQDAERARQELHGSMIEGRKIEVNCATARVHS 233
>PABP3_HUMAN (Q9H361) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) (Testis-specific poly(A)-binding protein) Length = 631 Score = 43.1 bits (100), Expect = 6e-04 Identities = 21/51 (41%), Positives = 35/51 (68%) Frame = +3 Query: 48 QVVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPRV 200 +V+T+ ++G+S+GFGFV+F A+ EM+ EL+G+ I V +AQ +V Sbjct: 221 KVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV 270 Score = 33.9 bits (76), Expect = 0.36 Identities = 17/40 (42%), Positives = 23/40 (57%) Frame = +3 Query: 72 GRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQ 191 GRS+GFGFV FS P A+ EM+ + + + V AQ Sbjct: 330 GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369 Score = 32.7 bits (73), Expect = 0.80 Identities = 16/44 (36%), Positives = 26/44 (59%) Frame = +3 Query: 66 DTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPR 197 D S+G+GFV F A + AI++M+ L+GR + V + + R Sbjct: 133 DENGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSR 176
>HNRPG_RAT (P84586) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 43.1 bits (100), Expect = 6e-04 Identities = 19/46 (41%), Positives = 28/46 (60%) Frame = +3 Query: 51 VVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKA 188 ++ +R+T +SRGF FVTF P R+M+ LDG+ I V +A Sbjct: 39 LMKDRETNKSRGFAFVTFESPADAKDVARDMNGKSLDGKAIKVEQA 84
>PABPB_XENLA (Q6IP09) Polyadenylate-binding protein 1-B (Poly(A)-binding protein| 1-B) (Cytoplasmic poly(A)-binding protein 1-B) (PABP-B) (PABP 1-B) (xPABP1-B) Length = 633 Score = 42.7 bits (99), Expect = 8e-04 Identities = 21/51 (41%), Positives = 34/51 (66%) Frame = +3 Query: 48 QVVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPRV 200 +V+T+ D G+SRGFGFV+F A+ +M+ +L+G+ I V +AQ +V Sbjct: 221 KVMTD-DHGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKKV 270 Score = 33.9 bits (76), Expect = 0.36 Identities = 17/40 (42%), Positives = 23/40 (57%) Frame = +3 Query: 72 GRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQ 191 GRS+GFGFV FS P A+ EM+ + + + V AQ Sbjct: 330 GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369 Score = 29.3 bits (64), Expect = 8.8 Identities = 15/44 (34%), Positives = 24/44 (54%) Frame = +3 Query: 66 DTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPR 197 D S+G+GFV F A + AI +M+ L+ R + V + + R Sbjct: 133 DENGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSR 176
>CIRBP_XENLA (O93235) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (xCIRP) Length = 163 Score = 42.7 bits (99), Expect = 8e-04 Identities = 22/46 (47%), Positives = 29/46 (63%) Frame = +3 Query: 51 VVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKA 188 VV +R+T RSRGFGFVTF A+ M+ +DGR I V++A Sbjct: 36 VVKDRETKRSRGFGFVTFENVDDAKDAMMAMNGKSVDGRQIRVDQA 81
>ELAV3_MOUSE (Q60900) ELAV-like protein 3 (Hu-antigen C) (HuC)| Length = 367 Score = 42.4 bits (98), Expect = 0.001 Identities = 19/49 (38%), Positives = 33/49 (67%) Frame = +3 Query: 48 QVVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQP 194 ++V ++ TG+S G+GFV +S+P D AI ++ +L +TI V+ A+P Sbjct: 69 KLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARP 117
>ELAV3_HUMAN (Q14576) ELAV-like protein 3 (Hu-antigen C) (HuC) (Paraneoplastic| cerebellar degeneration-associated antigen) (Paraneoplastic limbic encephalitis antigen 21) Length = 367 Score = 42.4 bits (98), Expect = 0.001 Identities = 19/49 (38%), Positives = 33/49 (67%) Frame = +3 Query: 48 QVVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQP 194 ++V ++ TG+S G+GFV +S+P D AI ++ +L +TI V+ A+P Sbjct: 69 KLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARP 117
>RBM23_HUMAN (Q86U06) Probable RNA-binding protein 23 (RNA-binding motif protein| 23) (RNA-binding region-containing protein 4) (Splicing factor SF2) Length = 439 Score = 42.4 bits (98), Expect = 0.001 Identities = 18/51 (35%), Positives = 32/51 (62%) Frame = +3 Query: 51 VVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPRVN 203 ++ + DTGRS+G+GF+TFS+ A+ +++ EL GR + V R++ Sbjct: 294 LMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTERLD 344
>HNRPG_MOUSE (O35479) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 42.4 bits (98), Expect = 0.001 Identities = 19/46 (41%), Positives = 28/46 (60%) Frame = +3 Query: 51 VVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKA 188 ++ +R+T +SRGF FVT P A R+M+ LDG+ I V +A Sbjct: 39 LMKDRETNKSRGFAFVTLESPADAKDAARDMNGKSLDGKAIKVEQA 84
>DAZP1_HUMAN (Q96EP5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 407 Score = 42.4 bits (98), Expect = 0.001 Identities = 18/49 (36%), Positives = 33/49 (67%) Frame = +3 Query: 51 VVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPR 197 ++ + + R RGFGF+TF + ++VD A+ MH ++ G+ + V +A+PR Sbjct: 144 MIYDAEKQRPRGFGFITFEDEQSVDQAV-NMHFHDIMGKKVEVKRAEPR 191 Score = 37.4 bits (85), Expect = 0.032 Identities = 18/49 (36%), Positives = 26/49 (53%) Frame = +3 Query: 51 VVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPR 197 ++ ++ T +SRGFGFV F +P V + + LDGR I PR Sbjct: 41 IMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPH-TLDGRNIDPKPCTPR 88
>CIRBP_RAT (P60825) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 42.4 bits (98), Expect = 0.001 Identities = 22/46 (47%), Positives = 29/46 (63%) Frame = +3 Query: 51 VVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKA 188 VV +R+T RSRGFGFVTF A+ M+ +DGR I V++A Sbjct: 37 VVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82
>CIRBP_PONPY (Q5RF83) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) Length = 172 Score = 42.4 bits (98), Expect = 0.001 Identities = 22/46 (47%), Positives = 29/46 (63%) Frame = +3 Query: 51 VVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKA 188 VV +R+T RSRGFGFVTF A+ M+ +DGR I V++A Sbjct: 37 VVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82
>CIRBP_MOUSE (P60824) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 42.4 bits (98), Expect = 0.001 Identities = 22/46 (47%), Positives = 29/46 (63%) Frame = +3 Query: 51 VVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKA 188 VV +R+T RSRGFGFVTF A+ M+ +DGR I V++A Sbjct: 37 VVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82
>CIRBP_HUMAN (Q14011) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 42.4 bits (98), Expect = 0.001 Identities = 22/46 (47%), Positives = 29/46 (63%) Frame = +3 Query: 51 VVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKA 188 VV +R+T RSRGFGFVTF A+ M+ +DGR I V++A Sbjct: 37 VVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82
>CIRBP_CRIGR (P60826) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 42.4 bits (98), Expect = 0.001 Identities = 22/46 (47%), Positives = 29/46 (63%) Frame = +3 Query: 51 VVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKA 188 VV +R+T RSRGFGFVTF A+ M+ +DGR I V++A Sbjct: 37 VVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82
>RNPC1_HUMAN (Q9H0Z9) RNA-binding region-containing protein 1 (HSRNASEB) (ssDNA| binding protein SEB4) (CLL-associated antigen KW-5) Length = 216 Score = 42.4 bits (98), Expect = 0.001 Identities = 21/46 (45%), Positives = 32/46 (69%) Frame = +3 Query: 51 VVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKA 188 V+T+R TG+SRG+GFVT ++ A + A ++ N +DGR +VN A Sbjct: 42 VITDRQTGKSRGYGFVTMADRAAAERACKD-PNPIIDGRKANVNLA 86
>DAZP1_XENLA (Q98SJ2) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) (Proline-rich Vg1 mRNA-binding protein) Length = 360 Score = 42.4 bits (98), Expect = 0.001 Identities = 18/49 (36%), Positives = 33/49 (67%) Frame = +3 Query: 51 VVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPR 197 ++ + + R RGFGF+TF + ++VD A+ MH ++ G+ + V +A+PR Sbjct: 145 MIYDAEKQRPRGFGFITFEDEQSVDQAV-NMHFHDIMGKKVEVKRAEPR 192 Score = 37.4 bits (85), Expect = 0.032 Identities = 18/49 (36%), Positives = 26/49 (53%) Frame = +3 Query: 51 VVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPR 197 ++ ++ T +SRGFGFV F +P V + + LDGR I PR Sbjct: 41 IMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPH-TLDGRNIDPKPCTPR 88
>PABPA_XENLA (P20965) Polyadenylate-binding protein 1-A (Poly(A)-binding protein| 1-A) (Cytoplasmic poly(A)-binding protein 1-A) (PABP-A) (PABP 1-A) (xPABP1-A) Length = 633 Score = 42.0 bits (97), Expect = 0.001 Identities = 19/51 (37%), Positives = 35/51 (68%) Frame = +3 Query: 48 QVVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPRV 200 +V+T+ D G+S+GFGFV+F A+ EM+ +++G+++ V +AQ +V Sbjct: 221 KVMTD-DNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKV 270 Score = 33.9 bits (76), Expect = 0.36 Identities = 17/40 (42%), Positives = 23/40 (57%) Frame = +3 Query: 72 GRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQ 191 GRS+GFGFV FS P A+ EM+ + + + V AQ Sbjct: 330 GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369 Score = 29.3 bits (64), Expect = 8.8 Identities = 15/44 (34%), Positives = 24/44 (54%) Frame = +3 Query: 66 DTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPR 197 D S+G+GFV F A + AI +M+ L+ R + V + + R Sbjct: 133 DENGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSR 176
>PUB1_YEAST (P32588) Nuclear and cytoplasmic polyadenylated RNA-binding protein| PUB1 (ARS consensus-binding protein ACBP-60) (Poly(U)-binding protein) (Poly uridylate-binding protein) Length = 452 Score = 41.6 bits (96), Expect = 0.002 Identities = 20/54 (37%), Positives = 32/54 (59%) Frame = +3 Query: 51 VVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPRVNSND 212 V+ + TG SRG+GFV+F+ A+ M +L+GR + +N A R N+N+ Sbjct: 192 VMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKRDNNNN 245
>GRP2B_ARATH (Q38896) Glycine-rich protein 2b (AtGRP2b)| Length = 201 Score = 41.6 bits (96), Expect = 0.002 Identities = 19/32 (59%), Positives = 20/32 (62%), Gaps = 5/32 (15%) Frame = +3 Query: 300 DDCFKCGRPGHWARECP-----YSVGGRPGRY 380 + CFKCG PGH AREC YS GG GRY Sbjct: 136 NSCFKCGEPGHMARECSQGGGGYSGGGGGGRY 167
>RO22_XENLA (P51990) Heterogeneous nuclear ribonucleoprotein A2 homolog 2| (hnRNP A2(B)) Length = 358 Score = 41.2 bits (95), Expect = 0.002 Identities = 18/56 (32%), Positives = 34/56 (60%) Frame = +3 Query: 45 TQVVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPRVNSND 212 T+++T++ +G+ RGFGFVTF++ VD + + ++ ++G V KA + D Sbjct: 129 TEIITDKQSGKKRGFGFVTFNDHDPVDKIVLQKYH-TINGHNAEVRKALSKQEMQD 183 Score = 35.8 bits (81), Expect = 0.094 Identities = 24/56 (42%), Positives = 29/56 (51%), Gaps = 2/56 (3%) Frame = +3 Query: 45 TQVVTERDTG--RSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPRVNS 206 T V RD RSRGFGFVTFS VD A+ + +DGR + +A R S Sbjct: 36 TDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMSARPH-TIDGRVVEPKRAVAREES 90
>A2BP1_HUMAN (Q9NWB1) Ataxin-2-binding protein 1| Length = 397 Score = 41.2 bits (95), Expect = 0.002 Identities = 20/44 (45%), Positives = 26/44 (59%) Frame = +3 Query: 78 SRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPRVNSN 209 S+GFGFVTF D A ++H ++GR I VN A RV +N Sbjct: 155 SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTN 198
>A2BP1_MOUSE (Q9JJ43) Ataxin-2-binding protein 1| Length = 396 Score = 41.2 bits (95), Expect = 0.002 Identities = 20/44 (45%), Positives = 26/44 (59%) Frame = +3 Query: 78 SRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPRVNSN 209 S+GFGFVTF D A ++H ++GR I VN A RV +N Sbjct: 154 SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTN 197
>RBM9_HUMAN (O43251) RNA-binding protein 9 (RNA-binding motif protein 9)| (Hexaribonucleotide-binding protein 2) (Repressor of tamoxifen transcriptional activity) Length = 390 Score = 41.2 bits (95), Expect = 0.002 Identities = 20/44 (45%), Positives = 26/44 (59%) Frame = +3 Query: 78 SRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPRVNSN 209 S+GFGFVTF D A ++H ++GR I VN A RV +N Sbjct: 159 SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTN 202
>ROA1_DROME (P07909) Heterogeneous nuclear ribonucleoprotein A1 (hnRNP core| protein A1-A) (PEN repeat clone P9) Length = 365 Score = 41.2 bits (95), Expect = 0.002 Identities = 20/52 (38%), Positives = 34/52 (65%), Gaps = 1/52 (1%) Frame = +3 Query: 51 VVTERDTGRSRGFGFVTFSEPRAVD-VAIREMHNGELDGRTISVNKAQPRVN 203 +V +++TG+ RGF FV F + VD V +++ H +L+G+ + V KA P+ N Sbjct: 153 IVIDKETGKKRGFAFVEFDDYDPVDKVVLQKQH--QLNGKMVDVKKALPKQN 202 Score = 38.5 bits (88), Expect = 0.015 Identities = 19/49 (38%), Positives = 30/49 (61%) Frame = +3 Query: 51 VVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPR 197 V+ + T RSRGFGF+T+S +D A ++ ++DGR + +A PR Sbjct: 62 VMKDPRTKRSRGFGFITYSHSSMIDEA-QKSRPHKIDGRVVEPKRAVPR 109
>PABP5_PONPY (P60050) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 40.8 bits (94), Expect = 0.003 Identities = 15/44 (34%), Positives = 28/44 (63%) Frame = +3 Query: 69 TGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPRV 200 +G+S+GFGFV + A A+ ++H +DG+ + V +AQ ++ Sbjct: 235 SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKI 278
>PABP5_PANTR (P60049) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 40.8 bits (94), Expect = 0.003 Identities = 15/44 (34%), Positives = 28/44 (63%) Frame = +3 Query: 69 TGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPRV 200 +G+S+GFGFV + A A+ ++H +DG+ + V +AQ ++ Sbjct: 235 SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKI 278
>PABP5_MACMU (Q7JGR2) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 40.8 bits (94), Expect = 0.003 Identities = 15/44 (34%), Positives = 28/44 (63%) Frame = +3 Query: 69 TGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPRV 200 +G+S+GFGFV + A A+ ++H +DG+ + V +AQ ++ Sbjct: 235 SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKI 278
>PABP5_HYLLA (P60048) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 40.8 bits (94), Expect = 0.003 Identities = 15/44 (34%), Positives = 28/44 (63%) Frame = +3 Query: 69 TGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPRV 200 +G+S+GFGFV + A A+ ++H +DG+ + V +AQ ++ Sbjct: 235 SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKI 278
>PABP5_HUMAN (Q96DU9) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 40.8 bits (94), Expect = 0.003 Identities = 15/44 (34%), Positives = 28/44 (63%) Frame = +3 Query: 69 TGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPRV 200 +G+S+GFGFV + A A+ ++H +DG+ + V +AQ ++ Sbjct: 235 SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKI 278
>PABP5_GORGO (P60047) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 40.8 bits (94), Expect = 0.003 Identities = 15/44 (34%), Positives = 28/44 (63%) Frame = +3 Query: 69 TGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPRV 200 +G+S+GFGFV + A A+ ++H +DG+ + V +AQ ++ Sbjct: 235 SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKI 278
>PABP4_HUMAN (Q13310) Polyadenylate-binding protein 4 (Poly(A)-binding protein| 4) (PABP 4) (Inducible poly(A)-binding protein) (iPABP) (Activated-platelet protein 1) (APP-1) Length = 644 Score = 40.8 bits (94), Expect = 0.003 Identities = 17/43 (39%), Positives = 29/43 (67%) Frame = +3 Query: 72 GRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPRV 200 G+S+GFGFV++ + + A+ EM+ E+ G+ I V +AQ +V Sbjct: 228 GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKV 270 Score = 35.4 bits (80), Expect = 0.12 Identities = 17/42 (40%), Positives = 24/42 (57%) Frame = +3 Query: 66 DTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQ 191 + GRS+GFGFV FS P A+ EM+ + + + V AQ Sbjct: 328 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
>RB87F_DROME (P48810) Heterogeneous nuclear ribonucleoprotein 87F (HRP36.1| protein) (Protein P11) Length = 385 Score = 40.4 bits (93), Expect = 0.004 Identities = 20/49 (40%), Positives = 31/49 (63%) Frame = +3 Query: 51 VVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPR 197 V+ + T RSRGFGF+T+S+ +D A + ++DGRT+ +A PR Sbjct: 55 VMKDPKTKRSRGFGFITYSQSYMIDNA-QNARPHKIDGRTVEPKRAVPR 102 Score = 35.4 bits (80), Expect = 0.12 Identities = 16/47 (34%), Positives = 31/47 (65%), Gaps = 1/47 (2%) Frame = +3 Query: 51 VVTERDTGRSRGFGFVTFSEPRAVD-VAIREMHNGELDGRTISVNKA 188 +V+++DTG+ RGF F+ F + VD + +++ H+ + +T+ V KA Sbjct: 146 IVSDKDTGKKRGFAFIEFDDYDPVDKIILQKTHS--IKNKTLDVKKA 190
>ROA2_MOUSE (O88569) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /| hnRNP B1) Length = 341 Score = 40.0 bits (92), Expect = 0.005 Identities = 18/50 (36%), Positives = 31/50 (62%) Frame = +3 Query: 48 QVVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPR 197 +++T+R +G+ RGFGFVTF + VD + + ++ ++G V KA R Sbjct: 130 EIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYH-TINGHNAEVRKALSR 178 Score = 37.4 bits (85), Expect = 0.032 Identities = 24/56 (42%), Positives = 29/56 (51%), Gaps = 2/56 (3%) Frame = +3 Query: 45 TQVVTERDTG--RSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPRVNS 206 T V RD RSRGFGFVTFS VD A+ + +DGR + +A R S Sbjct: 36 TDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPH-SIDGRVVEPKRAVAREES 90
>PPIE_MOUSE (Q9QZH3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 301 Score = 40.0 bits (92), Expect = 0.005 Identities = 21/49 (42%), Positives = 27/49 (55%) Frame = +3 Query: 48 QVVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQP 194 Q+ + +T + RGF FV F AI M+ EL GRTI VN A+P Sbjct: 36 QIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAKP 84
>PPIE_HUMAN (Q9UNP9) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 301 Score = 40.0 bits (92), Expect = 0.005 Identities = 21/49 (42%), Positives = 27/49 (55%) Frame = +3 Query: 48 QVVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQP 194 Q+ + +T + RGF FV F AI M+ EL GRTI VN A+P Sbjct: 36 QIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAKP 84
>ROA2_HUMAN (P22626) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /| hnRNP B1) Length = 353 Score = 40.0 bits (92), Expect = 0.005 Identities = 18/50 (36%), Positives = 31/50 (62%) Frame = +3 Query: 48 QVVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPR 197 +++T+R +G+ RGFGFVTF + VD + + ++ ++G V KA R Sbjct: 142 EIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYH-TINGHNAEVRKALSR 190 Score = 37.4 bits (85), Expect = 0.032 Identities = 24/56 (42%), Positives = 29/56 (51%), Gaps = 2/56 (3%) Frame = +3 Query: 45 TQVVTERDTG--RSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPRVNS 206 T V RD RSRGFGFVTFS VD A+ + +DGR + +A R S Sbjct: 48 TDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPH-SIDGRVVEPKRAVAREES 102
>PPIE_DROME (Q9V3G3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 300 Score = 40.0 bits (92), Expect = 0.005 Identities = 19/49 (38%), Positives = 29/49 (59%) Frame = +3 Query: 48 QVVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQP 194 Q+ + ++ R RGF F+ + + AI M++ EL GRTI VN A+P Sbjct: 36 QMPADYESQRHRGFAFIEYEQSEDAAAAIDNMNDSELCGRTIRVNLAKP 84
>SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-associated| protein 49) (SAP 49) (SF3b50) (Pre-mRNA-splicing factor SF3b 49 kDa subunit) Length = 424 Score = 39.3 bits (90), Expect = 0.009 Identities = 24/62 (38%), Positives = 33/62 (53%) Frame = +3 Query: 3 LWXELXXXXXXXXXTQVVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVN 182 LW EL T + +R TG+ +G+GFV F D AI+ M+ +L G+ I VN Sbjct: 29 LW-ELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVN 87 Query: 183 KA 188 KA Sbjct: 88 KA 89 Score = 35.4 bits (80), Expect = 0.12 Identities = 17/47 (36%), Positives = 28/47 (59%) Frame = +3 Query: 48 QVVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKA 188 +++ + DTG S+G+ F+ F+ A D AI M+ L R I+V+ A Sbjct: 131 KIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 177
>HEXP_LEIMA (Q04832) DNA-binding protein HEXBP (Hexamer-binding protein)| Length = 271 Score = 39.3 bits (90), Expect = 0.009 Identities = 14/26 (53%), Positives = 19/26 (73%) Frame = +3 Query: 303 DCFKCGRPGHWARECPYSVGGRPGRY 380 +C+KCG+ GH +R+CP S GG G Y Sbjct: 98 ECYKCGQEGHLSRDCPSSQGGSRGGY 123 Score = 36.6 bits (83), Expect = 0.055 Identities = 13/23 (56%), Positives = 17/23 (73%) Frame = +3 Query: 306 CFKCGRPGHWARECPYSVGGRPG 374 C+KCG+PGH +RECP + G G Sbjct: 224 CYKCGKPGHISRECPEAGGSYGG 246 Score = 33.9 bits (76), Expect = 0.36 Identities = 13/28 (46%), Positives = 16/28 (57%) Frame = +3 Query: 291 AASDDCFKCGRPGHWARECPYSVGGRPG 374 A C+KCG GH +R+CP GG G Sbjct: 165 AGDRTCYKCGDAGHISRDCPNGQGGYSG 192 Score = 33.5 bits (75), Expect = 0.47 Identities = 12/23 (52%), Positives = 15/23 (65%) Frame = +3 Query: 306 CFKCGRPGHWARECPYSVGGRPG 374 C+KCG GH +R+CP GG G Sbjct: 142 CYKCGDAGHISRDCPNGQGGYSG 164 Score = 32.7 bits (73), Expect = 0.80 Identities = 13/28 (46%), Positives = 18/28 (64%) Frame = +3 Query: 291 AASDDCFKCGRPGHWARECPYSVGGRPG 374 A + CF+CG GH +R+CP S +PG Sbjct: 67 AGAMTCFRCGEAGHMSRDCPNS--AKPG 92 Score = 32.7 bits (73), Expect = 0.80 Identities = 11/18 (61%), Positives = 13/18 (72%) Frame = +3 Query: 297 SDDCFKCGRPGHWARECP 350 S CF+CG GH +RECP Sbjct: 42 STTCFRCGEEGHMSRECP 59 Score = 32.3 bits (72), Expect = 1.0 Identities = 11/20 (55%), Positives = 13/20 (65%) Frame = +3 Query: 291 AASDDCFKCGRPGHWARECP 350 A C+KCG GH +RECP Sbjct: 193 AGDRKCYKCGESGHMSRECP 212 Score = 32.3 bits (72), Expect = 1.0 Identities = 11/19 (57%), Positives = 14/19 (73%) Frame = +3 Query: 294 ASDDCFKCGRPGHWARECP 350 +S C CG+ GH+ARECP Sbjct: 14 SSTSCRNCGKEGHYARECP 32 Score = 30.8 bits (68), Expect = 3.0 Identities = 10/17 (58%), Positives = 13/17 (76%) Frame = +3 Query: 306 CFKCGRPGHWARECPYS 356 C+KCG GH +R+CP S Sbjct: 255 CYKCGEAGHISRDCPSS 271
>RB97D_DROME (Q02926) Ribonucleoprotein RB97D| Length = 471 Score = 39.3 bits (90), Expect = 0.009 Identities = 23/51 (45%), Positives = 32/51 (62%), Gaps = 2/51 (3%) Frame = +3 Query: 51 VVTERD--TGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPR 197 VV RD T RSRGFGF+T+++ VD A +E +DG+T+ +A PR Sbjct: 61 VVVMRDAATKRSRGFGFITYTKSLMVDRA-QENRPHIIDGKTVEAKRALPR 110 Score = 32.3 bits (72), Expect = 1.0 Identities = 14/29 (48%), Positives = 21/29 (72%) Frame = +3 Query: 48 QVVTERDTGRSRGFGFVTFSEPRAVDVAI 134 +++T++ TG+ RGF FV F + AVD AI Sbjct: 153 KLLTDKTTGKRRGFAFVEFDDYDAVDKAI 181
>SFRS5_RAT (Q09167) Splicing factor, arginine/serine-rich 5 (Pre-mRNA-splicing| factor SRP40) (Insulin-induced growth response protein CL-4) (Delayed-early protein HRS) Length = 269 Score = 38.9 bits (89), Expect = 0.011 Identities = 18/45 (40%), Positives = 25/45 (55%) Frame = +3 Query: 63 RDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPR 197 RD RGFGFV F +PR D A+ E+ EL +++ A+ R Sbjct: 31 RDIDLKRGFGFVEFEDPRDADDAVYELDGKELCSERVTIEHARAR 75
>ELAV4_HUMAN (P26378) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 380 Score = 38.9 bits (89), Expect = 0.011 Identities = 17/49 (34%), Positives = 32/49 (65%) Frame = +3 Query: 48 QVVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQP 194 ++V ++ TG+S G+GFV + +P+ + AI ++ L +TI V+ A+P Sbjct: 76 KLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 124
>SFRS5_MOUSE (O35326) Splicing factor, arginine/serine-rich 5 (Pre-mRNA-splicing| factor SRP40) (Delayed-early protein HRS) Length = 270 Score = 38.9 bits (89), Expect = 0.011 Identities = 18/45 (40%), Positives = 25/45 (55%) Frame = +3 Query: 63 RDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPR 197 RD RGFGFV F +PR D A+ E+ EL +++ A+ R Sbjct: 31 RDIDLKRGFGFVEFEDPRDADDAVYELDGKELCSERVTIEHARAR 75
>ELAV4_MOUSE (Q61701) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 385 Score = 38.9 bits (89), Expect = 0.011 Identities = 17/49 (34%), Positives = 32/49 (65%) Frame = +3 Query: 48 QVVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQP 194 ++V ++ TG+S G+GFV + +P+ + AI ++ L +TI V+ A+P Sbjct: 81 KLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 129
>ELAV2_RAT (Q8CH84) ELAV-like protein 2 (Hu-antigen B) (HuB)| Length = 359 Score = 38.9 bits (89), Expect = 0.011 Identities = 17/49 (34%), Positives = 32/49 (65%) Frame = +3 Query: 48 QVVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQP 194 ++V ++ TG+S G+GFV + +P+ + AI ++ L +TI V+ A+P Sbjct: 69 KLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 117
>ELAV2_PONPY (Q5R9Z6) ELAV-like protein 2| Length = 359 Score = 38.9 bits (89), Expect = 0.011 Identities = 17/49 (34%), Positives = 32/49 (65%) Frame = +3 Query: 48 QVVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQP 194 ++V ++ TG+S G+GFV + +P+ + AI ++ L +TI V+ A+P Sbjct: 69 KLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 117
>ELAV2_HUMAN (Q12926) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Hel-N1) Length = 359 Score = 38.9 bits (89), Expect = 0.011 Identities = 17/49 (34%), Positives = 32/49 (65%) Frame = +3 Query: 48 QVVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQP 194 ++V ++ TG+S G+GFV + +P+ + AI ++ L +TI V+ A+P Sbjct: 69 KLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 117
>ELAV4_RAT (O09032) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 373 Score = 38.9 bits (89), Expect = 0.011 Identities = 17/49 (34%), Positives = 32/49 (65%) Frame = +3 Query: 48 QVVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQP 194 ++V ++ TG+S G+GFV + +P+ + AI ++ L +TI V+ A+P Sbjct: 69 KLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 117
>ELAV2_MOUSE (Q60899) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Mel-N1) Length = 360 Score = 38.9 bits (89), Expect = 0.011 Identities = 17/49 (34%), Positives = 32/49 (65%) Frame = +3 Query: 48 QVVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQP 194 ++V ++ TG+S G+GFV + +P+ + AI ++ L +TI V+ A+P Sbjct: 69 KLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 117
>SFRS5_HUMAN (Q13243) Splicing factor, arginine/serine-rich 5 (Pre-mRNA-splicing| factor SRP40) (Delayed-early protein HRS) Length = 272 Score = 38.9 bits (89), Expect = 0.011 Identities = 18/45 (40%), Positives = 25/45 (55%) Frame = +3 Query: 63 RDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPR 197 RD RGFGFV F +PR D A+ E+ EL +++ A+ R Sbjct: 31 RDIDLKRGFGFVEFEDPRDADDAVYELDGKELCSERVTIEHARAR 75
>MSI1H_RAT (Q8K3P4) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 38.9 bits (89), Expect = 0.011 Identities = 21/43 (48%), Positives = 26/43 (60%) Frame = +3 Query: 69 TGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPR 197 T RSRGFGFVTF + VD + + + ELD +TI A PR Sbjct: 57 TKRSRGFGFVTFMDQAGVDKVLAQSRH-ELDSKTIDPKVAFPR 98 Score = 38.5 bits (88), Expect = 0.015 Identities = 18/46 (39%), Positives = 28/46 (60%) Frame = +3 Query: 60 ERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPR 197 ++ T R RGFGFVTF V+ + E+H E++ + + KAQP+ Sbjct: 143 DKTTNRHRGFGFVTFESEDIVE-KVCEIHFHEINNKMVECKKAQPK 187
>MSI1H_MOUSE (Q61474) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 38.9 bits (89), Expect = 0.011 Identities = 21/43 (48%), Positives = 26/43 (60%) Frame = +3 Query: 69 TGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPR 197 T RSRGFGFVTF + VD + + + ELD +TI A PR Sbjct: 57 TKRSRGFGFVTFMDQAGVDKVLAQSRH-ELDSKTIDPKVAFPR 98 Score = 38.5 bits (88), Expect = 0.015 Identities = 18/46 (39%), Positives = 28/46 (60%) Frame = +3 Query: 60 ERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPR 197 ++ T R RGFGFVTF V+ + E+H E++ + + KAQP+ Sbjct: 143 DKTTNRHRGFGFVTFESEDIVE-KVCEIHFHEINNKMVECKKAQPK 187
>MSI1H_HUMAN (O43347) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 38.9 bits (89), Expect = 0.011 Identities = 21/43 (48%), Positives = 26/43 (60%) Frame = +3 Query: 69 TGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPR 197 T RSRGFGFVTF + VD + + + ELD +TI A PR Sbjct: 57 TKRSRGFGFVTFMDQAGVDKVLAQSRH-ELDSKTIDPKVAFPR 98 Score = 38.5 bits (88), Expect = 0.015 Identities = 18/46 (39%), Positives = 28/46 (60%) Frame = +3 Query: 60 ERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPR 197 ++ T R RGFGFVTF V+ + E+H E++ + + KAQP+ Sbjct: 143 DKTTNRHRGFGFVTFESEDIVE-KVCEIHFHEINNKMVECKKAQPK 187
>RBM4_BOVIN (Q3MHX3) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) Length = 362 Score = 38.5 bits (88), Expect = 0.015 Identities = 23/98 (23%), Positives = 36/98 (36%), Gaps = 2/98 (2%) Frame = +3 Query: 81 RGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPRVNSNDXXXXXXXXXXXXXXXX 260 + + FV AIR + N E G+ + V + R+ + Sbjct: 111 KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRT------------------ 152 Query: 261 XXXXXXDIVPAASDD--CFKCGRPGHWARECPYSVGGR 368 P D C++CG+ GHW++ECP GR Sbjct: 153 --------APGMGDQSGCYRCGKEGHWSKECPVDRSGR 182
>RBM4_HUMAN (Q9BWF3) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) (Lark homolog) (hLark) Length = 364 Score = 38.5 bits (88), Expect = 0.015 Identities = 23/98 (23%), Positives = 36/98 (36%), Gaps = 2/98 (2%) Frame = +3 Query: 81 RGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPRVNSNDXXXXXXXXXXXXXXXX 260 + + FV AIR + N E G+ + V + R+ + Sbjct: 111 KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRT------------------ 152 Query: 261 XXXXXXDIVPAASDD--CFKCGRPGHWARECPYSVGGR 368 P D C++CG+ GHW++ECP GR Sbjct: 153 --------APGMGDQSGCYRCGKEGHWSKECPIDRSGR 182
>ROA1_SCHAM (P21522) Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog| Length = 342 Score = 38.5 bits (88), Expect = 0.015 Identities = 20/49 (40%), Positives = 29/49 (59%) Frame = +3 Query: 51 VVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPR 197 V+ + T RSRGFGF+T+S VD A + ++DGR + +A PR Sbjct: 48 VMKDPKTKRSRGFGFITYSRAHMVDDA-QNARPHKVDGRVVEPKRAVPR 95
>RBM4_MOUSE (Q8C7Q4) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) (Lark homolog) (mLark) Length = 361 Score = 38.5 bits (88), Expect = 0.015 Identities = 23/98 (23%), Positives = 36/98 (36%), Gaps = 2/98 (2%) Frame = +3 Query: 81 RGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPRVNSNDXXXXXXXXXXXXXXXX 260 + + FV AIR + N E G+ + V + R+ + Sbjct: 111 KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRT------------------ 152 Query: 261 XXXXXXDIVPAASDD--CFKCGRPGHWARECPYSVGGR 368 P D C++CG+ GHW++ECP GR Sbjct: 153 --------APGMGDQSGCYRCGKEGHWSKECPIDRSGR 182
>PPIE_SCHMA (Q26548) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) Length = 273 Score = 38.1 bits (87), Expect = 0.019 Identities = 20/42 (47%), Positives = 24/42 (57%) Frame = +3 Query: 69 TGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQP 194 T + RGF FV F E AI M+ E+ GRTI VN A+P Sbjct: 7 TEKHRGFAFVEFEEVEDAMSAIDNMNESEIFGRTIRVNVARP 48
>ROA1_RAT (P04256) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (HDP) Length = 319 Score = 37.7 bits (86), Expect = 0.025 Identities = 20/52 (38%), Positives = 32/52 (61%) Frame = +3 Query: 51 VVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPRVNS 206 V+ + +T RSRGFGFVT++ VD A+ + ++DGR + +A R +S Sbjct: 44 VMRDPNTKRSRGFGFVTYATVEEVDAAMNARPH-KVDGRVVEPKRAVSREDS 94 Score = 37.0 bits (84), Expect = 0.042 Identities = 18/48 (37%), Positives = 31/48 (64%), Gaps = 1/48 (2%) Frame = +3 Query: 48 QVVTERDTGRSRGFGFVTFSEPRAVD-VAIREMHNGELDGRTISVNKA 188 +++T+R +G+ RGF FVTF + +VD + I++ H ++G V KA Sbjct: 134 EIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHT--VNGHNCEVRKA 179
>ROA1_MOUSE (P49312) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) (HDP-1) (Topoisomerase-inhibitor suppressed) Length = 319 Score = 37.7 bits (86), Expect = 0.025 Identities = 20/52 (38%), Positives = 32/52 (61%) Frame = +3 Query: 51 VVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPRVNS 206 V+ + +T RSRGFGFVT++ VD A+ + ++DGR + +A R +S Sbjct: 44 VMRDPNTKRSRGFGFVTYATVEEVDAAMNARPH-KVDGRVVEPKRAVSREDS 94 Score = 37.0 bits (84), Expect = 0.042 Identities = 18/48 (37%), Positives = 31/48 (64%), Gaps = 1/48 (2%) Frame = +3 Query: 48 QVVTERDTGRSRGFGFVTFSEPRAVD-VAIREMHNGELDGRTISVNKA 188 +++T+R +G+ RGF FVTF + +VD + I++ H ++G V KA Sbjct: 134 EIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHT--VNGHNCEVRKA 179
>ROA1_MACMU (Q28521) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 319 Score = 37.7 bits (86), Expect = 0.025 Identities = 18/48 (37%), Positives = 31/48 (64%), Gaps = 1/48 (2%) Frame = +3 Query: 48 QVVTERDTGRSRGFGFVTFSEPRAVD-VAIREMHNGELDGRTISVNKA 188 +++T+R +G+ RGF FVTF + +VD + I++ H ++G V KA Sbjct: 134 EIMTDRGSGKKRGFAFVTFDDHNSVDKIVIQKYHT--VNGHNCEVRKA 179 Score = 37.7 bits (86), Expect = 0.025 Identities = 20/52 (38%), Positives = 32/52 (61%) Frame = +3 Query: 51 VVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPRVNS 206 V+ + +T RSRGFGFVT++ VD A+ + ++DGR + +A R +S Sbjct: 44 VMRDPNTKRSRGFGFVTYATVEKVDAAMNARPH-KVDGRVVEPKRAVSREDS 94
>RBM4B_RAT (Q64LC9) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) (Zinc-responsive protein ZD7) Length = 357 Score = 37.7 bits (86), Expect = 0.025 Identities = 23/98 (23%), Positives = 36/98 (36%), Gaps = 2/98 (2%) Frame = +3 Query: 81 RGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPRVNSNDXXXXXXXXXXXXXXXX 260 + + FV AIR + N E G+ + V + R+ + Sbjct: 111 KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRT------------------ 152 Query: 261 XXXXXXDIVPAASDD--CFKCGRPGHWARECPYSVGGR 368 P D C++CG+ GHW++ECP GR Sbjct: 153 --------APGMGDQSGCYRCGKEGHWSKECPVDRTGR 182
>RBM4B_MOUSE (Q8VE92) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) Length = 357 Score = 37.7 bits (86), Expect = 0.025 Identities = 23/98 (23%), Positives = 36/98 (36%), Gaps = 2/98 (2%) Frame = +3 Query: 81 RGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPRVNSNDXXXXXXXXXXXXXXXX 260 + + FV AIR + N E G+ + V + R+ + Sbjct: 111 KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRT------------------ 152 Query: 261 XXXXXXDIVPAASDD--CFKCGRPGHWARECPYSVGGR 368 P D C++CG+ GHW++ECP GR Sbjct: 153 --------APGMGDQSGCYRCGKEGHWSKECPVDRTGR 182
>ROA1_HUMAN (P09651) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) Length = 371 Score = 37.7 bits (86), Expect = 0.025 Identities = 20/52 (38%), Positives = 32/52 (61%) Frame = +3 Query: 51 VVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPRVNS 206 V+ + +T RSRGFGFVT++ VD A+ + ++DGR + +A R +S Sbjct: 44 VMRDPNTKRSRGFGFVTYATVEEVDAAMNARPH-KVDGRVVEPKRAVSREDS 94 Score = 37.0 bits (84), Expect = 0.042 Identities = 18/48 (37%), Positives = 31/48 (64%), Gaps = 1/48 (2%) Frame = +3 Query: 48 QVVTERDTGRSRGFGFVTFSEPRAVD-VAIREMHNGELDGRTISVNKA 188 +++T+R +G+ RGF FVTF + +VD + I++ H ++G V KA Sbjct: 134 EIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHT--VNGHNCEVRKA 179
>ROA1_BOVIN (P09867) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (Unwinding protein 1) (UP1) (Fragment) Length = 195 Score = 37.7 bits (86), Expect = 0.025 Identities = 20/52 (38%), Positives = 32/52 (61%) Frame = +3 Query: 51 VVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPRVNS 206 V+ + +T RSRGFGFVT++ VD A+ + ++DGR + +A R +S Sbjct: 44 VMRDPNTKRSRGFGFVTYATVEEVDAAMNARPH-KVDGRVVEPKRAVSREDS 94 Score = 37.0 bits (84), Expect = 0.042 Identities = 18/48 (37%), Positives = 31/48 (64%), Gaps = 1/48 (2%) Frame = +3 Query: 48 QVVTERDTGRSRGFGFVTFSEPRAVD-VAIREMHNGELDGRTISVNKA 188 +++T+R +G+ RGF FVTF + +VD + I++ H ++G V KA Sbjct: 134 EIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHT--VNGHNCEVRKA 179
>RBM4_RABIT (Q9BDY9) RNA-binding protein 4 (RNA-binding motif protein 4) (Lark| homolog) Length = 359 Score = 37.7 bits (86), Expect = 0.025 Identities = 23/98 (23%), Positives = 36/98 (36%), Gaps = 2/98 (2%) Frame = +3 Query: 81 RGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPRVNSNDXXXXXXXXXXXXXXXX 260 + + FV AIR + N E G+ + V + R+ + Sbjct: 111 KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRT------------------ 152 Query: 261 XXXXXXDIVPAASDD--CFKCGRPGHWARECPYSVGGR 368 P D C++CG+ GHW++ECP GR Sbjct: 153 --------APGMGDQSGCYRCGKEGHWSKECPVDRTGR 182
>RBM4B_HUMAN (Q9BQ04) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) Length = 359 Score = 37.7 bits (86), Expect = 0.025 Identities = 23/98 (23%), Positives = 36/98 (36%), Gaps = 2/98 (2%) Frame = +3 Query: 81 RGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPRVNSNDXXXXXXXXXXXXXXXX 260 + + FV AIR + N E G+ + V + R+ + Sbjct: 111 KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRT------------------ 152 Query: 261 XXXXXXDIVPAASDD--CFKCGRPGHWARECPYSVGGR 368 P D C++CG+ GHW++ECP GR Sbjct: 153 --------APGMGDQSGCYRCGKEGHWSKECPVDRTGR 182
>ROAA_MOUSE (Q99020) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (CArG-binding factor-A) (CBF-A) Length = 285 Score = 37.4 bits (85), Expect = 0.032 Identities = 18/41 (43%), Positives = 26/41 (63%) Frame = +3 Query: 66 DTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKA 188 +TGRSRGFGF+ F + +V+ + + + LDGR I KA Sbjct: 111 NTGRSRGFGFILFKDSSSVEKVLDQKEH-RLDGRVIDPKKA 150
>CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 632 Score = 37.4 bits (85), Expect = 0.032 Identities = 15/55 (27%), Positives = 30/55 (54%) Frame = +3 Query: 48 QVVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPRVNSND 212 ++V +R+TG+ +G+GF + + A+R ++ E GR + V+ A N + Sbjct: 46 RLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEE 100
>CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 616 Score = 37.4 bits (85), Expect = 0.032 Identities = 15/55 (27%), Positives = 30/55 (54%) Frame = +3 Query: 48 QVVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPRVNSND 212 ++V +R+TG+ +G+GF + + A+R ++ E GR + V+ A N + Sbjct: 46 RLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEE 100
>CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 580 Score = 37.4 bits (85), Expect = 0.032 Identities = 15/55 (27%), Positives = 30/55 (54%) Frame = +3 Query: 48 QVVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPRVNSND 212 ++V +R+TG+ +G+GF + + A+R ++ E GR + V+ A N + Sbjct: 46 RLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEE 100
>CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 572 Score = 37.4 bits (85), Expect = 0.032 Identities = 15/55 (27%), Positives = 30/55 (54%) Frame = +3 Query: 48 QVVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPRVNSND 212 ++V +R+TG+ +G+GF + + A+R ++ E GR + V+ A N + Sbjct: 46 RLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEE 100
>CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 37.4 bits (85), Expect = 0.032 Identities = 15/55 (27%), Positives = 30/55 (54%) Frame = +3 Query: 48 QVVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPRVNSND 212 ++V +R+TG+ +G+GF + + A+R ++ E GR + V+ A N + Sbjct: 46 RLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEE 100
>CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 37.4 bits (85), Expect = 0.032 Identities = 15/55 (27%), Positives = 30/55 (54%) Frame = +3 Query: 48 QVVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPRVNSND 212 ++V +R+TG+ +G+GF + + A+R ++ E GR + V+ A N + Sbjct: 46 RLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEE 100
>ROAA_HUMAN (Q99729) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (APOBEC-1-binding protein 1) (ABBP-1) Length = 331 Score = 37.4 bits (85), Expect = 0.032 Identities = 18/41 (43%), Positives = 26/41 (63%) Frame = +3 Query: 66 DTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKA 188 +TGRSRGFGF+ F + +V+ + + + LDGR I KA Sbjct: 104 NTGRSRGFGFILFKDAASVEKVLDQKEH-RLDGRVIDPKKA 143
>HNRPD_RAT (Q9JJ54) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 353 Score = 37.0 bits (84), Expect = 0.042 Identities = 18/41 (43%), Positives = 26/41 (63%) Frame = +3 Query: 69 TGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQ 191 TGRSRGFGFV F E +VD + + +L+G+ I +A+ Sbjct: 132 TGRSRGFGFVLFKESESVD-KVMDQKEHKLNGKVIDPKRAK 171
>HNRPD_MOUSE (Q60668) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 355 Score = 37.0 bits (84), Expect = 0.042 Identities = 18/41 (43%), Positives = 26/41 (63%) Frame = +3 Query: 69 TGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQ 191 TGRSRGFGFV F E +VD + + +L+G+ I +A+ Sbjct: 134 TGRSRGFGFVLFKESESVD-KVMDQKEHKLNGKVIDPKRAK 173
>HNRPD_HUMAN (Q14103) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 355 Score = 37.0 bits (84), Expect = 0.042 Identities = 18/41 (43%), Positives = 26/41 (63%) Frame = +3 Query: 69 TGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQ 191 TGRSRGFGFV F E +VD + + +L+G+ I +A+ Sbjct: 134 TGRSRGFGFVLFKESESVD-KVMDQKEHKLNGKVIDPKRAK 173
>RBY1A_HUMAN (Q15414) RNA-binding motif protein, Y chromosome, family 1 member| A1 (RNA-binding motif protein 1) Length = 496 Score = 37.0 bits (84), Expect = 0.042 Identities = 16/41 (39%), Positives = 24/41 (58%) Frame = +3 Query: 69 TGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQ 191 T +SRGF F+TF P A ++M+ L G+ I V +A+ Sbjct: 44 TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84
>PABP_DROME (P21187) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 634 Score = 36.6 bits (83), Expect = 0.055 Identities = 15/49 (30%), Positives = 32/49 (65%), Gaps = 1/49 (2%) Frame = +3 Query: 54 VTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGEL-DGRTISVNKAQPR 197 V ++ G+S+GFGFV F A + A++ ++ ++ +G+++ V +AQ + Sbjct: 214 VMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKK 262 Score = 33.5 bits (75), Expect = 0.47 Identities = 16/48 (33%), Positives = 27/48 (56%) Frame = +3 Query: 54 VTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPR 197 V + G S+G+GFV F A + +I +++ L+G+ + V K PR Sbjct: 121 VATDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPR 168 Score = 30.8 bits (68), Expect = 3.0 Identities = 16/48 (33%), Positives = 28/48 (58%) Frame = +3 Query: 48 QVVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQ 191 +V+T+ + GRS+GFGFV F+ A+ E++ + + + V AQ Sbjct: 317 KVMTDEE-GRSKGFGFVCFNAASEATCAVTELNGRVVGSKPLYVALAQ 363
>RO21_XENLA (P51989) Heterogeneous nuclear ribonucleoprotein A2 homolog 1| (hnRNP A2(A)) Length = 346 Score = 36.6 bits (83), Expect = 0.055 Identities = 16/55 (29%), Positives = 31/55 (56%) Frame = +3 Query: 48 QVVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPRVNSND 212 +++T++ +G+ RGF FVTF + VD + + ++ ++G V KA + D Sbjct: 130 EIITDKQSGKKRGFAFVTFDDHDPVDKIVLQKYH-TINGHNAEVRKALSKQEMQD 183 Score = 35.8 bits (81), Expect = 0.094 Identities = 24/56 (42%), Positives = 29/56 (51%), Gaps = 2/56 (3%) Frame = +3 Query: 45 TQVVTERDTG--RSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPRVNS 206 T V RD RSRGFGFVTFS VD A+ + +DGR + +A R S Sbjct: 36 TDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMATRPH-TIDGRVVEPKRAVAREES 90
>ZCH13_HUMAN (Q8WW36) Zinc finger CCHC domain-containing protein 13| Length = 166 Score = 36.2 bits (82), Expect = 0.072 Identities = 16/28 (57%), Positives = 17/28 (60%), Gaps = 1/28 (3%) Frame = +3 Query: 294 ASDDCFKCGRPGHWARECPY-SVGGRPG 374 +S D F CG GHWAR CP GGR G Sbjct: 2 SSKDFFACGHSGHWARGCPRGGAGGRRG 29
>CTF1_SCHPO (O43040) Cleavage and termination factor 1 (Transcription| termination factor ctf1) Length = 363 Score = 36.2 bits (82), Expect = 0.072 Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 2/56 (3%) Frame = +3 Query: 48 QVVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVN--KAQPRVNSN 209 ++V + +TG +G+GF F + +A+R+++N EL R I V PR N + Sbjct: 37 KLVLDPETGSGKGYGFCEFFDSETTAMAVRKLNNSELGPRKIRVEFPSNDPRRNQS 92
>ROA3_HUMAN (P51991) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 378 Score = 36.2 bits (82), Expect = 0.072 Identities = 21/52 (40%), Positives = 31/52 (59%) Frame = +3 Query: 51 VVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPRVNS 206 V+ + T RSRGFGFVT+S VD A+ + ++DGR + +A R +S Sbjct: 66 VMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPH-KVDGRVVEPKRAVSREDS 116 Score = 35.0 bits (79), Expect = 0.16 Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%) Frame = +3 Query: 48 QVVTERDTGRSRGFGFVTFSEPRAVD-VAIREMHNGELDGRTISVNKA 188 +V+ +R +G+ RGF FVTF + VD + +++ H ++G V KA Sbjct: 156 EVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHT--INGHNCEVKKA 201
>SAFB1_RAT (O88453) Scaffold attachment factor B (Scaffold attachment factor| B1) (SAF-B) Length = 931 Score = 36.2 bits (82), Expect = 0.072 Identities = 19/48 (39%), Positives = 26/48 (54%) Frame = +3 Query: 48 QVVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQ 191 +VVT + +R +GFVT S I +H EL G+ ISV KA+ Sbjct: 458 KVVTNARSPGARCYGFVTMSTAEEATKCINHLHKTELHGKMISVEKAK 505
>SAFB1_HUMAN (Q15424) Scaffold attachment factor B (Scaffold attachment factor| B1) (SAF-B) (HSP27 estrogen response element-TATA box-binding protein) (HSP27 ERE-TATA-binding protein) Length = 915 Score = 36.2 bits (82), Expect = 0.072 Identities = 19/48 (39%), Positives = 26/48 (54%) Frame = +3 Query: 48 QVVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQ 191 +VVT + +R +GFVT S I +H EL G+ ISV KA+ Sbjct: 436 KVVTNARSPGARCYGFVTMSTAEEATKCINHLHKTELHGKMISVEKAK 483
>YDC1_SCHPO (Q10422) Hypothetical RNA-binding protein C25G10.01 in chromosome I| Length = 297 Score = 36.2 bits (82), Expect = 0.072 Identities = 18/48 (37%), Positives = 29/48 (60%) Frame = +3 Query: 48 QVVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQ 191 +++ E T SRGFGF++FS AI +++ E GR ++V KA+ Sbjct: 131 RIMREPVTKASRGFGFLSFSTVEEATSAIDNLNSQEFYGRVLNVQKAK 178
>SAFB2_MOUSE (Q80YR5) Scaffold attachment factor B2| Length = 991 Score = 36.2 bits (82), Expect = 0.072 Identities = 20/48 (41%), Positives = 26/48 (54%) Frame = +3 Query: 48 QVVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQ 191 +VVT + +R +GFVT S I +H EL GR ISV KA+ Sbjct: 481 KVVTNARSPGARCYGFVTMSTSDEATKCISHLHRTELHGRMISVEKAK 528
>RSP1_CAEEL (Q23121) Probable splicing factor, arginine/serine-rich 1| (RNA-binding protein srp-5) (CeSRp75) Length = 312 Score = 36.2 bits (82), Expect = 0.072 Identities = 16/50 (32%), Positives = 27/50 (54%) Frame = +3 Query: 63 RDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPRVNSND 212 RD GFGFV F + R + A+ +++ EL G + ++ ++PR D Sbjct: 30 RDVLLKNGFGFVEFDDKRDAEDAVHDLNGKELGGERVILDYSKPRGGGGD 79
>GRP2_NICSY (P27484) Glycine-rich protein 2| Length = 214 Score = 36.2 bits (82), Expect = 0.072 Identities = 14/23 (60%), Positives = 16/23 (69%) Frame = +3 Query: 306 CFKCGRPGHWARECPYSVGGRPG 374 CFKCG GH+AR+C S GG G Sbjct: 159 CFKCGESGHFARDCSQSGGGGGG 181 Score = 32.3 bits (72), Expect = 1.0 Identities = 13/21 (61%), Positives = 16/21 (76%) Frame = +3 Query: 306 CFKCGRPGHWARECPYSVGGR 368 C+KCG GH+AREC + GGR Sbjct: 196 CYKCGEDGHFAREC--TSGGR 214
>SAFB2_HUMAN (Q14151) Scaffold attachment factor B2| Length = 953 Score = 36.2 bits (82), Expect = 0.072 Identities = 20/48 (41%), Positives = 26/48 (54%) Frame = +3 Query: 48 QVVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQ 191 +VVT + +R +GFVT S I +H EL GR ISV KA+ Sbjct: 437 KVVTNARSPGARCYGFVTMSTSDEATKCISHLHRTELHGRMISVEKAK 484
>NAM8_YEAST (Q00539) Protein NAM8| Length = 523 Score = 36.2 bits (82), Expect = 0.072 Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 3/58 (5%) Frame = +3 Query: 48 QVVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKA---QPRVNSND 212 ++V ++ TG S+G+GFV F+ +A+ EM L+GR I V Q V+ N+ Sbjct: 194 KIVHDQVTGMSKGYGFVKFTNSDEQQLALSEMQGVFLNGRAIKVGPTSGQQQHVSGNN 251
>ROA3_RAT (Q6URK4) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 379 Score = 36.2 bits (82), Expect = 0.072 Identities = 21/52 (40%), Positives = 31/52 (59%) Frame = +3 Query: 51 VVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPRVNS 206 V+ + T RSRGFGFVT+S VD A+ + ++DGR + +A R +S Sbjct: 66 VMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPH-KVDGRVVEPKRAVSREDS 116 Score = 35.0 bits (79), Expect = 0.16 Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%) Frame = +3 Query: 48 QVVTERDTGRSRGFGFVTFSEPRAVD-VAIREMHNGELDGRTISVNKA 188 +V+ +R +G+ RGF FVTF + VD + +++ H ++G V KA Sbjct: 156 EVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHT--INGHNCEVKKA 201
>ROA3_MOUSE (Q8BG05) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 379 Score = 36.2 bits (82), Expect = 0.072 Identities = 21/52 (40%), Positives = 31/52 (59%) Frame = +3 Query: 51 VVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPRVNS 206 V+ + T RSRGFGFVT+S VD A+ + ++DGR + +A R +S Sbjct: 66 VMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPH-KVDGRVVEPKRAVSREDS 116 Score = 35.0 bits (79), Expect = 0.16 Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%) Frame = +3 Query: 48 QVVTERDTGRSRGFGFVTFSEPRAVD-VAIREMHNGELDGRTISVNKA 188 +V+ +R +G+ RGF FVTF + VD + +++ H ++G V KA Sbjct: 156 EVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHT--INGHNCEVKKA 201
>SAP49_SCHPO (O14102) Spliceosome-associated protein 49| Length = 335 Score = 35.8 bits (81), Expect = 0.094 Identities = 18/48 (37%), Positives = 27/48 (56%) Frame = +3 Query: 54 VTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPR 197 V + GRS+G+GFV++ D AI M+N L + I+V+ A R Sbjct: 131 VARDENGRSKGYGFVSYDSFETADAAIEAMNNQFLMNKPITVSYAFKR 178
>TIA1_MOUSE (P52912) Nucleolysin TIA-1 (RNA-binding protein TIA-1)| Length = 386 Score = 35.8 bits (81), Expect = 0.094 Identities = 19/47 (40%), Positives = 28/47 (59%) Frame = +3 Query: 48 QVVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKA 188 +VV + TG+S+G+GFV+F + AI++M L GR I N A Sbjct: 136 RVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 182
>TIA1_HUMAN (P31483) Nucleolysin TIA-1 isoform p40 (RNA-binding protein TIA-1)| (p40-TIA-1) [Contains: Nucleolysin TIA-1 isoform p15 (p15-TIA-1)] Length = 386 Score = 35.8 bits (81), Expect = 0.094 Identities = 19/47 (40%), Positives = 28/47 (59%) Frame = +3 Query: 48 QVVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKA 188 +VV + TG+S+G+GFV+F + AI++M L GR I N A Sbjct: 136 RVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 182
>ROA0_HUMAN (Q13151) Heterogeneous nuclear ribonucleoprotein A0 (hnRNP A0)| Length = 305 Score = 35.8 bits (81), Expect = 0.094 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 1/51 (1%) Frame = +3 Query: 48 QVVTERDTGRSRGFGFVTFSEPRAVD-VAIREMHNGELDGRTISVNKAQPR 197 +++ ++ +G+ RGFGFV F A D A+ + H + G + V KA P+ Sbjct: 128 EIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFH--PIQGHRVEVKKAVPK 176 Score = 35.0 bits (79), Expect = 0.16 Identities = 20/52 (38%), Positives = 28/52 (53%) Frame = +3 Query: 51 VVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPRVNS 206 VV T RSR FGFVT+S D A+ + +DG T+ + +A R +S Sbjct: 38 VVVNPQTKRSRCFGFVTYSNVEEADAAMAASPHA-VDGNTVELKRAVSREDS 88
>RO32_XENLA (P51992) Heterogeneous nuclear ribonucleoprotein A3 homolog 2| (hnRNP A3(B)) Length = 385 Score = 35.8 bits (81), Expect = 0.094 Identities = 20/52 (38%), Positives = 31/52 (59%) Frame = +3 Query: 51 VVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPRVNS 206 V+ + T RSRGFGFVT+S VD ++ + ++DGR + +A R +S Sbjct: 58 VMRDPQTKRSRGFGFVTYSCVEEVDASMSARPH-KVDGRVVEPKRAVSREDS 108 Score = 32.0 bits (71), Expect = 1.4 Identities = 13/34 (38%), Positives = 23/34 (67%), Gaps = 1/34 (2%) Frame = +3 Query: 48 QVVTERDTGRSRGFGFVTFSEPRAVD-VAIREMH 146 +V+ +R +G+ RGF FVTF + VD + +++ H Sbjct: 148 EVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYH 181
>YP85_CAEEL (Q09442) Putative RNA-binding protein C08B11.5| Length = 388 Score = 35.8 bits (81), Expect = 0.094 Identities = 23/70 (32%), Positives = 32/70 (45%) Frame = +3 Query: 3 LWXELXXXXXXXXXTQVVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVN 182 LW EL + +R T +GFGFV F D AI+ ++ +L G+ I VN Sbjct: 29 LW-ELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKILNMIKLYGKPIKVN 87 Query: 183 KAQPRVNSND 212 KA + D Sbjct: 88 KASAHEKNMD 97 Score = 34.7 bits (78), Expect = 0.21 Identities = 17/50 (34%), Positives = 29/50 (58%) Frame = +3 Query: 48 QVVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPR 197 +++ + D+G S+GF F+ F+ A D A+ M+ L R I+V+ A R Sbjct: 131 KIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFKR 180
>TRA2A_MOUSE (Q6PFR5) Transformer-2 protein homolog (TRA-2 alpha)| Length = 281 Score = 35.8 bits (81), Expect = 0.094 Identities = 20/44 (45%), Positives = 25/44 (56%) Frame = +3 Query: 51 VVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVN 182 VV ++ TGRSRGF FV F A+ + ELDGR I V+ Sbjct: 148 VVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVD 191
>TRA2A_HUMAN (Q13595) Transformer-2 protein homolog (TRA-2 alpha)| Length = 282 Score = 35.8 bits (81), Expect = 0.094 Identities = 20/44 (45%), Positives = 25/44 (56%) Frame = +3 Query: 51 VVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVN 182 VV ++ TGRSRGF FV F A+ + ELDGR I V+ Sbjct: 150 VVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVD 193
>RBM4_BRARE (Q6IQ97) RNA-binding protein 4 (RNA-binding motif protein 4)| Length = 419 Score = 35.8 bits (81), Expect = 0.094 Identities = 10/20 (50%), Positives = 15/20 (75%) Frame = +3 Query: 306 CFKCGRPGHWARECPYSVGG 365 C++CG+ GHW++ECP G Sbjct: 162 CYRCGQEGHWSKECPLDQNG 181
>PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 653 Score = 35.8 bits (81), Expect = 0.094 Identities = 16/42 (38%), Positives = 26/42 (61%) Frame = +3 Query: 66 DTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQ 191 + G+S+GFGFV ++ P + A+ EM+ L G+ + V AQ Sbjct: 399 EQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQ 440 Score = 32.3 bits (72), Expect = 1.0 Identities = 13/41 (31%), Positives = 24/41 (58%) Frame = +3 Query: 75 RSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPR 197 + RGFGFV ++ A+ E+++ E G+ + V +AQ + Sbjct: 299 KPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKK 339
>RO31_XENLA (P51968) Heterogeneous nuclear ribonucleoprotein A3 homolog 1| (hnRNP A3(A)) Length = 373 Score = 35.8 bits (81), Expect = 0.094 Identities = 20/52 (38%), Positives = 31/52 (59%) Frame = +3 Query: 51 VVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPRVNS 206 V+ + T RSRGFGFVT+S VD ++ + ++DGR + +A R +S Sbjct: 58 VMRDPQTKRSRGFGFVTYSCVEEVDASMSARPH-KVDGRVVEPKRAVSREDS 108 Score = 35.0 bits (79), Expect = 0.16 Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%) Frame = +3 Query: 48 QVVTERDTGRSRGFGFVTFSEPRAVD-VAIREMHNGELDGRTISVNKA 188 +V+ +R +G+ RGF FVTF + VD + +++ H ++G V KA Sbjct: 148 EVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHT--INGHNCEVKKA 193
>GAG_HTL1M (P14077) Gag polyprotein [Contains: Major core protein p19; Major| core protein p24; Nucleic acid-binding protein p15] Length = 428 Score = 35.4 bits (80), Expect = 0.12 Identities = 10/20 (50%), Positives = 15/20 (75%) Frame = +3 Query: 288 PAASDDCFKCGRPGHWAREC 347 P + CF+CG+ GHW+R+C Sbjct: 350 PPPNQPCFRCGKAGHWSRDC 369
>YDB2_SCHPO (Q10355) Hypothetical RNA-binding protein C22E12.02 in chromosome I| Length = 219 Score = 35.4 bits (80), Expect = 0.12 Identities = 19/56 (33%), Positives = 33/56 (58%) Frame = +3 Query: 45 TQVVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPRVNSND 212 T+VV +R+ G++RGFGFV+F + A RE + + R + +++A V N+ Sbjct: 59 TKVVRDRE-GKTRGFGFVSFKDSDQFLKAWREKNGKYIGSRPVKLSRATSDVKPNE 113
>GAG_HTL1C (P14076) Gag polyprotein [Contains: Major core protein p19; Major| core protein p24; Nucleic acid-binding protein p15] Length = 429 Score = 35.4 bits (80), Expect = 0.12 Identities = 10/20 (50%), Positives = 15/20 (75%) Frame = +3 Query: 288 PAASDDCFKCGRPGHWAREC 347 P + CF+CG+ GHW+R+C Sbjct: 351 PPPNQPCFRCGKAGHWSRDC 370
>GAG_HTL1A (P03345) Gag polyprotein [Contains: Major core protein p19; Major| core protein p24; Nucleic acid-binding protein p15] Length = 429 Score = 35.4 bits (80), Expect = 0.12 Identities = 10/20 (50%), Positives = 15/20 (75%) Frame = +3 Query: 288 PAASDDCFKCGRPGHWAREC 347 P + CF+CG+ GHW+R+C Sbjct: 351 PPPNQPCFRCGKAGHWSRDC 370
>SGN1_YEAST (P40561) RNA-binding protein SGN1| Length = 250 Score = 35.4 bits (80), Expect = 0.12 Identities = 14/47 (29%), Positives = 31/47 (65%) Frame = +3 Query: 60 ERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPRV 200 +R+TG +G+G++ F P + A+ +++ GEL G+ I+V++ + + Sbjct: 98 DRNTGTPKGYGYIEFESPAYREKAL-QLNGGELKGKKIAVSRKRTNI 143
>ROA1_XENLA (P17130) Heterogeneous nuclear ribonucleoproteins A1 homolog (hnRNP| A1) (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 365 Score = 35.0 bits (79), Expect = 0.16 Identities = 19/53 (35%), Positives = 32/53 (60%) Frame = +3 Query: 51 VVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPRVNSN 209 V+ + ++ RSRGFGFVT+ VD A+ + ++DGR + +A R +S+ Sbjct: 45 VMRDPNSKRSRGFGFVTYLSTDEVDAAMTARPH-KVDGRVVEPKRAVSREDSS 96 Score = 34.3 bits (77), Expect = 0.27 Identities = 14/34 (41%), Positives = 25/34 (73%), Gaps = 1/34 (2%) Frame = +3 Query: 48 QVVTERDTGRSRGFGFVTFSEPRAVD-VAIREMH 146 +++T+R +G+ RGF FVTF + +VD + I++ H Sbjct: 135 EIMTDRGSGKKRGFAFVTFEDHDSVDKIVIQKYH 168
>RBM34_HUMAN (P42696) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 430 Score = 35.0 bits (79), Expect = 0.16 Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 5/59 (8%) Frame = +3 Query: 48 QVVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTI----SVNKAQ-PRVNSN 209 ++V ++ TG +GFG+V F +V +A++ ++N EL GR + SVNK + + NSN Sbjct: 317 RIVRDKMTGIGKGFGYVLFENTDSVHLALK-LNNSELMGRKLRVMRSVNKEKFKQQNSN 374
>PABP5_ARATH (Q05196) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 668 Score = 35.0 bits (79), Expect = 0.16 Identities = 17/32 (53%), Positives = 23/32 (71%) Frame = +3 Query: 72 GRSRGFGFVTFSEPRAVDVAIREMHNGELDGR 167 G SRGFGFV +S P +A++EM NG++ GR Sbjct: 365 GLSRGFGFVAYSNPEEALLAMKEM-NGKMIGR 395
>RBBP6_MOUSE (P97868) Retinoblastoma-binding protein 6 (p53-associated cellular| protein of testis) (Proliferation potential-related protein) (Protein P2P-R) Length = 1790 Score = 35.0 bits (79), Expect = 0.16 Identities = 11/21 (52%), Positives = 15/21 (71%) Frame = +3 Query: 288 PAASDDCFKCGRPGHWARECP 350 P S CF+CG+PGH+ + CP Sbjct: 156 PPPSYTCFRCGKPGHYIKNCP 176
>GAG_BLVJ (P03344) Gag polyprotein [Contains: Core protein p15 (Matrix| protein); Core protein p24; Core protein p12] Length = 391 Score = 35.0 bits (79), Expect = 0.16 Identities = 11/22 (50%), Positives = 15/22 (68%) Frame = +3 Query: 306 CFKCGRPGHWARECPYSVGGRP 371 C++C + GHWAR+CP G P Sbjct: 346 CYRCLKEGHWARDCPTKATGPP 367
>GAG_BLVAU (P25058) Gag polyprotein [Contains: Core protein p15 (Matrix| protein); Core protein p24; Core protein p12] Length = 391 Score = 35.0 bits (79), Expect = 0.16 Identities = 11/22 (50%), Positives = 15/22 (68%) Frame = +3 Query: 306 CFKCGRPGHWARECPYSVGGRP 371 C++C + GHWAR+CP G P Sbjct: 346 CYRCLKEGHWARDCPTKTTGPP 367
>GAG_HTLV2 (P03346) Gag polyprotein [Contains: Core protein p15 (p19); Core| protein p24; Core protein p12 (p15)] Length = 432 Score = 35.0 bits (79), Expect = 0.16 Identities = 10/20 (50%), Positives = 15/20 (75%) Frame = +3 Query: 288 PAASDDCFKCGRPGHWAREC 347 P + CF+CG+ GHW+R+C Sbjct: 356 PPPTQPCFRCGKVGHWSRDC 375
>RBBP6_HUMAN (Q7Z6E9) Retinoblastoma-binding protein 6 (p53-associated cellular| protein of testis) (Proliferation potential-related protein) (Protein P2P-R) (Retinoblastoma-binding Q protein 1) (Protein RBQ-1) Length = 1792 Score = 35.0 bits (79), Expect = 0.16 Identities = 11/21 (52%), Positives = 15/21 (71%) Frame = +3 Query: 288 PAASDDCFKCGRPGHWARECP 350 P S CF+CG+PGH+ + CP Sbjct: 155 PPPSYTCFRCGKPGHYIKNCP 175
>SFRS2_RAT (Q6PDU1) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) Length = 220 Score = 34.7 bits (78), Expect = 0.21 Identities = 18/44 (40%), Positives = 24/44 (54%) Frame = +3 Query: 60 ERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQ 191 +R T SRGF FV F + R + A+ M LDGR + V A+ Sbjct: 47 DRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMAR 90
>SFRS2_PANTR (Q5R1W5) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) Length = 220 Score = 34.7 bits (78), Expect = 0.21 Identities = 18/44 (40%), Positives = 24/44 (54%) Frame = +3 Query: 60 ERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQ 191 +R T SRGF FV F + R + A+ M LDGR + V A+ Sbjct: 47 DRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMAR 90
>SFRS2_MOUSE (Q62093) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) (Putative myelin regulatory factor 1) (MRF-1) Length = 220 Score = 34.7 bits (78), Expect = 0.21 Identities = 18/44 (40%), Positives = 24/44 (54%) Frame = +3 Query: 60 ERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQ 191 +R T SRGF FV F + R + A+ M LDGR + V A+ Sbjct: 47 DRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMAR 90
>SFRS2_HUMAN (Q01130) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) Length = 220 Score = 34.7 bits (78), Expect = 0.21 Identities = 18/44 (40%), Positives = 24/44 (54%) Frame = +3 Query: 60 ERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQ 191 +R T SRGF FV F + R + A+ M LDGR + V A+ Sbjct: 47 DRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMAR 90
>IF34_YEAST (Q04067) Eukaryotic translation initiation factor 3 RNA-binding| subunit (eIF-3 RNA-binding subunit) (eIF3 p33) (Translation initiation factor eIF3, p33 subunit) Length = 274 Score = 34.7 bits (78), Expect = 0.21 Identities = 17/50 (34%), Positives = 27/50 (54%) Frame = +3 Query: 51 VVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPRV 200 VV ++TG+SRG FVTFS + A+R + + V ++P+V Sbjct: 223 VVRNKETGKSRGLAFVTFSSEEVAEQALRFLDGRGYMNLILRVEWSKPKV 272
>PABP_YEAST (P04147) Polyadenylate-binding protein, cytoplasmic and nuclear| (Poly(A)-binding protein) (PABP) (ARS consensus-binding protein ACBP-67) (Polyadenylate tail-binding protein) Length = 576 Score = 34.7 bits (78), Expect = 0.21 Identities = 18/46 (39%), Positives = 25/46 (54%) Frame = +3 Query: 54 VTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQ 191 V + G+S+GFGFV FS P AI E + + G+ + V AQ Sbjct: 352 VMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQ 397 Score = 32.7 bits (73), Expect = 0.80 Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 1/47 (2%) Frame = +3 Query: 60 ERDT-GRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPR 197 E+D G+ +GFGFV + + A+ +++ EL+G + V +AQ + Sbjct: 250 EKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKK 296 Score = 31.6 bits (70), Expect = 1.8 Identities = 16/38 (42%), Positives = 23/38 (60%) Frame = +3 Query: 66 DTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISV 179 + G+S+GFGFV F E A AI ++ L+G+ I V Sbjct: 160 ENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYV 197
>RBM34_RAT (Q5M9F1) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 428 Score = 34.7 bits (78), Expect = 0.21 Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 5/59 (8%) Frame = +3 Query: 48 QVVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTI----SVNKAQ-PRVNSN 209 ++V TG RGFG+V F AV +A++ ++N EL GR + SVNK + + NSN Sbjct: 315 RIVRNPLTGVGRGFGYVLFENTDAVHLALK-LNNSELMGRKLRVMRSVNKEKLKQQNSN 372
>PABPX_ARATH (Q9ZQA8) Probable polyadenylate-binding protein At2g36660| (Poly(A)-binding protein At2g36660) (PABP) Length = 609 Score = 34.7 bits (78), Expect = 0.21 Identities = 16/44 (36%), Positives = 24/44 (54%) Frame = +3 Query: 66 DTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPR 197 + G+S+GFGFV FS P A++ H G+ + V AQ + Sbjct: 339 EKGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIAQKK 382 Score = 30.8 bits (68), Expect = 3.0 Identities = 15/44 (34%), Positives = 25/44 (56%) Frame = +3 Query: 54 VTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNK 185 V + G+SRG+GFV F + A AI+ +++ + + I V K Sbjct: 143 VATLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGK 186
>SFRS2_CHICK (P30352) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) Length = 221 Score = 34.7 bits (78), Expect = 0.21 Identities = 18/44 (40%), Positives = 24/44 (54%) Frame = +3 Query: 60 ERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQ 191 +R T SRGF FV F + R + A+ M LDGR + V A+ Sbjct: 48 DRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMAR 91
>RBM28_HUMAN (Q9NW13) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 758 Score = 34.7 bits (78), Expect = 0.21 Identities = 16/45 (35%), Positives = 26/45 (57%) Frame = +3 Query: 54 VTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKA 188 + + G+ RGFGFV F A++ M+ E+ GRT++V+ A Sbjct: 144 IPRKPDGKMRGFGFVQFKNLLEAGKALKGMNMKEIKGRTVAVDWA 188 Score = 32.7 bits (73), Expect = 0.80 Identities = 19/52 (36%), Positives = 31/52 (59%) Frame = +3 Query: 51 VVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPRVNS 206 VVTE+ + RGFG+VTFS V A++E+ +G I+V A+ ++ + Sbjct: 34 VVTEKGSKACRGFGYVTFSMLEDVQRALKEITT--FEGCKINVTVAKKKLRN 83
>RBMX2_MOUSE (Q8R0F5) RNA-binding motif protein, X-linked 2| Length = 326 Score = 34.3 bits (77), Expect = 0.27 Identities = 14/44 (31%), Positives = 29/44 (65%) Frame = +3 Query: 51 VVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVN 182 +V ++ TG+S+GF F+ + + R+ +A+ + ++ GRTI V+ Sbjct: 67 LVRDKKTGKSKGFCFLCYEDQRSTVLAVDNFNGIKIKGRTIRVD 110
>SFRS7_HUMAN (Q16629) Splicing factor, arginine/serine-rich 7 (Splicing factor| 9G8) Length = 238 Score = 34.3 bits (77), Expect = 0.27 Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 5/93 (5%) Frame = +3 Query: 84 GFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPRVNSNDXXXXXXXXXXXXXXXXX 263 GF FV F +PR + A+R LDG+ I ++ + +++ Sbjct: 48 GFAFVEFEDPRDAEDAVRG-----LDGKVICGSRVRVELSTG----------------MP 86 Query: 264 XXXXXDIVPAA-----SDDCFKCGRPGHWAREC 347 D PA +D C++CG GH+A +C Sbjct: 87 RRSRFDRPPARRPFDPNDRCYECGEKGHYAYDC 119
>SFRS7_MOUSE (Q8BL97) Splicing factor, arginine/serine-rich 7| Length = 267 Score = 34.3 bits (77), Expect = 0.27 Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 5/93 (5%) Frame = +3 Query: 84 GFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPRVNSNDXXXXXXXXXXXXXXXXX 263 GF FV F +PR + A+R LDG+ I ++ + +++ Sbjct: 77 GFAFVEFEDPRDAEDAVRG-----LDGKVICGSRVRVELSTG----------------MP 115 Query: 264 XXXXXDIVPAA-----SDDCFKCGRPGHWAREC 347 D PA +D C++CG GH+A +C Sbjct: 116 RRSRFDRPPARRPFDPNDRCYECGEKGHYAYDC 148
>RBMX2_HUMAN (Q9Y388) RNA-binding motif protein, X-linked 2| Length = 322 Score = 34.3 bits (77), Expect = 0.27 Identities = 14/44 (31%), Positives = 29/44 (65%) Frame = +3 Query: 51 VVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVN 182 +V ++ TG+S+GF F+ + + R+ +A+ + ++ GRTI V+ Sbjct: 67 LVRDKKTGKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRVD 110
>GAG_GALV (P21416) Gag polyprotein [Contains: Core protein p15; Core protein| p12; Core protein p30; Core protein p10] Length = 519 Score = 33.9 bits (76), Expect = 0.36 Identities = 12/21 (57%), Positives = 12/21 (57%) Frame = +3 Query: 288 PAASDDCFKCGRPGHWARECP 350 P D C C GHWARECP Sbjct: 484 PLDKDQCAYCKEKGHWARECP 504
>TIAR_MOUSE (P70318) Nucleolysin TIAR (TIA-1-related protein)| Length = 392 Score = 33.9 bits (76), Expect = 0.36 Identities = 19/47 (40%), Positives = 26/47 (55%) Frame = +3 Query: 48 QVVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKA 188 +VV + TG+S+G+GFV+F + AI M L GR I N A Sbjct: 144 RVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWA 190
>TCG1_SCHPO (Q9HEQ9) Single-stranded TG1-3 DNA-binding protein| Length = 348 Score = 33.9 bits (76), Expect = 0.36 Identities = 17/37 (45%), Positives = 21/37 (56%) Frame = +3 Query: 84 GFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQP 194 G FVTF+ VD AI ++ LD R I V KA+P Sbjct: 90 GIAFVTFNNQEDVDKAIETLNGKTLDDREIVVQKARP 126 Score = 30.4 bits (67), Expect = 4.0 Identities = 15/38 (39%), Positives = 21/38 (55%) Frame = +3 Query: 75 RSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKA 188 R RGFGFV+F+ AI EM+ ++ T+ V A Sbjct: 256 RGRGFGFVSFANAEDQSRAIEEMNGKQVGDLTLVVKSA 293
>THR_DROVI (Q6V3V8) Protein three rows| Length = 1411 Score = 33.9 bits (76), Expect = 0.36 Identities = 19/66 (28%), Positives = 38/66 (57%), Gaps = 4/66 (6%) Frame = -2 Query: 187 ALFTEMVRPSSSPLCISRIATSTARGSENVTNPNPR----ERPVSLSVTTCVLDDLAELA 20 A++TE VRP+SS + ++S++ SEN ++P + + P L + C L D+ +L+ Sbjct: 1262 AIYTEDVRPASS----TTSSSSSSSSSENASSPERKSTKSKSPKRLDLNACQLIDIIDLS 1317 Query: 19 ESSXQS 2 + ++ Sbjct: 1318 DDETEA 1323
>TIAR_HUMAN (Q01085) Nucleolysin TIAR (TIA-1-related protein)| Length = 375 Score = 33.9 bits (76), Expect = 0.36 Identities = 19/47 (40%), Positives = 26/47 (55%) Frame = +3 Query: 48 QVVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKA 188 +VV + TG+S+G+GFV+F + AI M L GR I N A Sbjct: 127 RVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWA 173
>RBM34_MOUSE (Q8C5L7) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 375 Score = 33.9 bits (76), Expect = 0.36 Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 4/50 (8%) Frame = +3 Query: 48 QVVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTI----SVNK 185 ++V TG RGFG+V F AV +A++ ++N EL GR + SVNK Sbjct: 321 RIVRNPLTGVGRGFGYVLFENTDAVHLALK-LNNSELMGRKLRVMRSVNK 369
>NOP4_YEAST (P37838) Nucleolar protein NOP4 (Nucleolar protein NOP77)| Length = 685 Score = 33.5 bits (75), Expect = 0.47 Identities = 25/102 (24%), Positives = 38/102 (37%) Frame = +3 Query: 51 VVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPRVNSNDXXXXXX 230 VV + RSRGFGFV+F+ A+ + + +G + V+ A+ R S Sbjct: 56 VVVKDTNKRSRGFGFVSFAVEDDTKEALAKARKTKFNGHILRVDIAKRRDRSKKTSEVVE 115 Query: 231 XXXXXXXXXXXXXXXXDIVPAASDDCFKCGRPGHWARECPYS 356 D A +D G+P R P+S Sbjct: 116 KSTPESSEKITGQNNEDEDDADGEDSMLKGKPKLIIRNMPWS 157 Score = 30.0 bits (66), Expect = 5.2 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 12/65 (18%) Frame = +3 Query: 54 VTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVN------------KAQPR 197 + + G+ GF FVT + +A+ + ++DGR ++V+ KAQP Sbjct: 179 IPRKRDGKLCGFAFVTMKKISNCRIALENTKDLKIDGRKVAVDFAVQKNRWEDYKKAQPE 238 Query: 198 VNSND 212 +N D Sbjct: 239 MNDKD 243
>YG41_SCHPO (O60176) Hypothetical RNA-binding protein C23E6.01c in chromosome| II Length = 473 Score = 33.1 bits (74), Expect = 0.61 Identities = 17/50 (34%), Positives = 26/50 (52%) Frame = +3 Query: 48 QVVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPR 197 +++T+ T SRG+GFV F++ A+ EM R I V A P+ Sbjct: 217 KIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLATPK 266
>SQD_DROME (Q08473) RNA-binding protein squid (Heterogeneous nuclear| ribonucleoprotein 40) (HNRNP 40) Length = 344 Score = 33.1 bits (74), Expect = 0.61 Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 1/50 (2%) Frame = +3 Query: 51 VVTERDTGRSRGFGFVTFSEPRAVD-VAIREMHNGELDGRTISVNKAQPR 197 V T+ TGRSRGF F+ F+ A+D V+ + H ++ + + KA+ R Sbjct: 87 VKTDPQTGRSRGFAFIVFTNTEAIDKVSAADEH--IINSKKVDPKKAKAR 134
>ELAV_DROVI (P23241) Protein elav (Embryonic lethal abnormal visual protein)| Length = 519 Score = 33.1 bits (74), Expect = 0.61 Identities = 14/41 (34%), Positives = 25/41 (60%) Frame = +3 Query: 72 GRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQP 194 G+S G+GFV + P+ + A+ ++ L +TI V+ A+P Sbjct: 236 GQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARP 276
>ELAV_DROME (P16914) Protein elav (Embryonic lethal abnormal visual protein)| Length = 483 Score = 33.1 bits (74), Expect = 0.61 Identities = 14/41 (34%), Positives = 25/41 (60%) Frame = +3 Query: 72 GRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQP 194 G+S G+GFV + P+ + A+ ++ L +TI V+ A+P Sbjct: 200 GQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARP 240
>GAG_FLV (P10262) Gag polyprotein [Contains: Core protein p15; Core protein| p12; Core protein p30; Core protein p10] Length = 580 Score = 33.1 bits (74), Expect = 0.61 Identities = 10/22 (45%), Positives = 12/22 (54%) Frame = +3 Query: 285 VPAASDDCFKCGRPGHWARECP 350 +P D C C GHW R+CP Sbjct: 542 IPLGKDQCAYCKEKGHWVRDCP 563
>PABP3_ARATH (O64380) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) Length = 660 Score = 33.1 bits (74), Expect = 0.61 Identities = 17/32 (53%), Positives = 21/32 (65%) Frame = +3 Query: 72 GRSRGFGFVTFSEPRAVDVAIREMHNGELDGR 167 G SRGFGFV +S P A+ EM NG++ GR Sbjct: 369 GMSRGFGFVAYSNPEEALRALSEM-NGKMIGR 399 Score = 29.6 bits (65), Expect = 6.7 Identities = 12/37 (32%), Positives = 23/37 (62%) Frame = +3 Query: 69 TGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISV 179 TGRS+G+GFV F + + AI +++ ++ + + V Sbjct: 172 TGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFV 208
>RECQ4_MOUSE (Q75NR7) ATP-dependent DNA helicase Q4 (EC 3.6.1.-) (RecQ| protein-like 4) Length = 1216 Score = 32.7 bits (73), Expect = 0.80 Identities = 10/16 (62%), Positives = 13/16 (81%) Frame = +3 Query: 300 DDCFKCGRPGHWAREC 347 D CF+CG+ GHWA +C Sbjct: 393 DTCFRCGQFGHWASQC 408
>FUS_MOUSE (P56959) RNA-binding protein FUS (Pigpen protein)| Length = 518 Score = 32.7 bits (73), Expect = 0.80 Identities = 17/51 (33%), Positives = 26/51 (50%) Frame = +3 Query: 57 TERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPRVNSN 209 T+R+TG+ +G V+F +P + AI E G I V+ A R + N Sbjct: 319 TDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFATRRADFN 369
>NELFE_DROVI (Q95ZE9) Negative elongation factor E| Length = 281 Score = 32.7 bits (73), Expect = 0.80 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 2/39 (5%) Frame = +3 Query: 90 GFVTFSEPRAVDVAIREMHNGELDGRTISVNKA--QPRV 200 GFV+F++P + D AI EMH + G + V A QP++ Sbjct: 203 GFVSFAKPESADRAIAEMHGKSVTGIVLQVQLARRQPQI 241
>FUS_HUMAN (P35637) RNA-binding protein FUS (Oncogene FUS) (Oncogene TLS)| (Translocated in liposarcoma protein) (POMp75) (75 kDa DNA-pairing protein) Length = 526 Score = 32.7 bits (73), Expect = 0.80 Identities = 17/51 (33%), Positives = 26/51 (50%) Frame = +3 Query: 57 TERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPRVNSN 209 T+R+TG+ +G V+F +P + AI E G I V+ A R + N Sbjct: 326 TDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFATRRADFN 376
>FUS_BOVIN (Q28009) RNA-binding protein FUS (Pigpen protein)| Length = 512 Score = 32.7 bits (73), Expect = 0.80 Identities = 17/51 (33%), Positives = 26/51 (50%) Frame = +3 Query: 57 TERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPRVNSN 209 T+R+TG+ +G V+F +P + AI E G I V+ A R + N Sbjct: 312 TDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFATRRADFN 362
>ELAV1_HUMAN (Q15717) ELAV-like protein 1 (Hu-antigen R) (HuR)| Length = 326 Score = 32.3 bits (72), Expect = 1.0 Identities = 14/49 (28%), Positives = 28/49 (57%) Frame = +3 Query: 48 QVVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQP 194 +++ ++ G S G+GFV + + + AI ++ L +TI V+ A+P Sbjct: 50 KLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARP 98
>RBM28_MOUSE (Q8CGC6) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 749 Score = 32.3 bits (72), Expect = 1.0 Identities = 19/52 (36%), Positives = 30/52 (57%) Frame = +3 Query: 51 VVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPRVNS 206 VVTE+ + RGFG+VTFS V A++E+ +G I V A+ ++ + Sbjct: 34 VVTEKGSKACRGFGYVTFSMLEDVQRALKEITT--FEGCKIDVTVAKKKLRN 83 Score = 30.4 bits (67), Expect = 4.0 Identities = 14/45 (31%), Positives = 25/45 (55%) Frame = +3 Query: 54 VTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKA 188 + ++ G+ RGF FV F A++ + E+ GRT++V+ A Sbjct: 144 IPKKPDGKMRGFAFVQFKNLLEAGKALKGANMKEIKGRTVAVDWA 188
>BYR3_SCHPO (P36627) Cellular nucleic acid-binding protein homolog| Length = 179 Score = 32.3 bits (72), Expect = 1.0 Identities = 13/31 (41%), Positives = 18/31 (58%) Frame = +3 Query: 288 PAASDDCFKCGRPGHWARECPYSVGGRPGRY 380 P +C+KCGR GH AR+C + GR+ Sbjct: 79 PRQGAECYKCGRVGHIARDCRTNGQQSGGRF 109 Score = 31.6 bits (70), Expect = 1.8 Identities = 12/29 (41%), Positives = 14/29 (48%) Frame = +3 Query: 288 PAASDDCFKCGRPGHWARECPYSVGGRPG 374 P C+ CG GH R+CP S R G Sbjct: 54 PQQEKTCYACGTAGHLVRDCPSSPNPRQG 82
>RNPS1_XENLA (Q5XG24) RNA-binding protein with serine-rich domain 1| Length = 283 Score = 32.3 bits (72), Expect = 1.0 Identities = 11/35 (31%), Positives = 22/35 (62%) Frame = +3 Query: 78 SRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVN 182 S+G+ +V F P + A++ M G++DG+ I+ + Sbjct: 179 SKGYAYVEFEAPEEAEKALKHMDGGQIDGQEITAS 213
>ACF_RAT (Q923K9) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 594 Score = 32.0 bits (71), Expect = 1.4 Identities = 15/37 (40%), Positives = 25/37 (67%), Gaps = 1/37 (2%) Frame = +3 Query: 72 GRSRGFGFVTFSEPRAVDVAIREMHNGEL-DGRTISV 179 G +RG+ FVTFS + AI++++N E+ +GR + V Sbjct: 93 GNNRGYAFVTFSNKQEAKNAIKQLNNYEIRNGRLLGV 129 Score = 31.2 bits (69), Expect = 2.3 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 2/51 (3%) Frame = +3 Query: 66 DTGRSRGFGFVTFSEPRAVDVAIREMHNG--ELDGRTISVNKAQPRVNSND 212 D ++RGF FV + RA +A R + G +L G I+V+ A+P V ++ Sbjct: 174 DKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDE 224
>ELAV1_MOUSE (P70372) ELAV-like protein 1 (Hu-antigen R) (HuR) (Elav-like| generic protein) (MelG) Length = 326 Score = 32.0 bits (71), Expect = 1.4 Identities = 14/49 (28%), Positives = 28/49 (57%) Frame = +3 Query: 48 QVVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQP 194 +++ ++ G S G+GFV + + + AI ++ L +TI V+ A+P Sbjct: 50 KLIRDKVAGHSLGYGFVNYVTAKDAERAISTLNGLRLQSKTIKVSYARP 98
>NELFE_DROME (P92204) Negative elongation factor E| Length = 280 Score = 32.0 bits (71), Expect = 1.4 Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 2/39 (5%) Frame = +3 Query: 90 GFVTFSEPRAVDVAIREMHNGELDGRTISVNKA--QPRV 200 GFV+F++P + D AI E+H ++G + V A QP++ Sbjct: 202 GFVSFAKPESADRAIAEIHGKNVNGINLQVQLARRQPQI 240
>MRD1_CRYNE (Q5KJL5) Multiple RNA-binding domain-containing protein 1| Length = 769 Score = 32.0 bits (71), Expect = 1.4 Identities = 14/38 (36%), Positives = 22/38 (57%) Frame = +3 Query: 78 SRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQ 191 S G+GFV F A A++ + E+DG+++ V AQ Sbjct: 580 SMGYGFVGFKTKEAATKALKALEGFEIDGKSLEVKFAQ 617
>SCE3_SCHPO (O14369) Probable RNA-binding protein sce3| Length = 388 Score = 32.0 bits (71), Expect = 1.4 Identities = 17/50 (34%), Positives = 28/50 (56%) Frame = +3 Query: 48 QVVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPR 197 ++V + T RSRGFG+V F + A+ + +L GR + + A+PR Sbjct: 122 RLVIDPLTERSRGFGYVEFETADTLSAAL-ALSGEDLMGRPVRITVAEPR 170
>RSP2_CAEEL (Q23120) Probable splicing factor, arginine/serine-rich 2| (RNA-binding protein srp-4) (CeSRp40) Length = 281 Score = 32.0 bits (71), Expect = 1.4 Identities = 15/49 (30%), Positives = 25/49 (51%) Frame = +3 Query: 66 DTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPRVNSND 212 D GFGFV F + R D A+ +++ EL G + + + +V N+ Sbjct: 30 DVIMKNGFGFVDFQDQRDADDAVHDLNGKELCGERVILEFPRRKVGYNE 78
>GAG_MLVFP (P26805) Gag polyprotein (Core polyprotein) [Contains: Matrix| protein p15; RNA-binding phosphoprotein p12; Capsid protein p30; Nucleocapsid protein p10] Length = 537 Score = 32.0 bits (71), Expect = 1.4 Identities = 12/25 (48%), Positives = 13/25 (52%) Frame = +3 Query: 300 DDCFKCGRPGHWARECPYSVGGRPG 374 D C C GHWAR+CP G G Sbjct: 501 DQCAYCKEKGHWARDCPKKPRGPRG 525
>GAG_MLVFF (P26806) Gag polyprotein (Core polyprotein) [Contains: Matrix| protein p15; RNA-binding phosphoprotein p12; Capsid protein p30; Nucleocapsid protein p10] Length = 537 Score = 32.0 bits (71), Expect = 1.4 Identities = 12/25 (48%), Positives = 13/25 (52%) Frame = +3 Query: 300 DDCFKCGRPGHWARECPYSVGGRPG 374 D C C GHWAR+CP G G Sbjct: 501 DQCAYCKEKGHWARDCPKKPRGPRG 525
>GAG_MLVF5 (P26807) Gag polyprotein (Core polyprotein) [Contains: Matrix| protein p15; RNA-binding phosphoprotein p12; Capsid protein p30; Nucleocapsid protein p10] Length = 538 Score = 32.0 bits (71), Expect = 1.4 Identities = 12/25 (48%), Positives = 13/25 (52%) Frame = +3 Query: 300 DDCFKCGRPGHWARECPYSVGGRPG 374 D C C GHWAR+CP G G Sbjct: 502 DQCAYCKEKGHWARDCPKKPRGPRG 526
>HRPX_PLALO (P04929) Histidine-rich glycoprotein precursor| Length = 351 Score = 31.6 bits (70), Expect = 1.8 Identities = 26/126 (20%), Positives = 36/126 (28%) Frame = -3 Query: 582 HNDHHHHICRQKNDQQLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLILQSGHHAHQRH 403 H+ HHHH + ++ + HH H H Sbjct: 117 HHHHHHHAAHHHHHEEHHHHHHAAHHHHHE--------------------EHHHHHHAAH 156 Query: 402 *HTWKGESTFQVYLQQNRDIHEPSVQGVHT*SNHHLQRVLCQLHHDIHL*LQMSNYYPHI 223 H W F + H P H + HH HH H ++ PH Sbjct: 157 HHPW-----FHHHHLGYHHHHAPHHHHHHHHAPHHHHHHHHAPHHHHH-----HHHAPHH 206 Query: 222 HSHHHY 205 H HHH+ Sbjct: 207 HHHHHH 212 Score = 31.2 bits (69), Expect = 2.3 Identities = 20/72 (27%), Positives = 28/72 (38%) Frame = -3 Query: 420 HAHQRH*HTWKGESTFQVYLQQNRDIHEPSVQGVHT*SNHHLQRVLCQLHHDIHL*LQMS 241 H H+ H H E HEP H +HH + HH+ H Sbjct: 56 HLHEEHHHHHPEEH------------HEPH----HEEHHHHHPEEHHEPHHEEH-----H 94 Query: 240 NYYPHIHSHHHY 205 +++PH H HHH+ Sbjct: 95 HHHPHPHHHHHH 106
>RSD1_SCHPO (O13845) RNA-binding protein rsd1| Length = 604 Score = 31.6 bits (70), Expect = 1.8 Identities = 13/38 (34%), Positives = 23/38 (60%) Frame = +3 Query: 66 DTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISV 179 D RS+GFG++ + P + A+ +M+ +L GR + V Sbjct: 375 DQNRSKGFGYIQYRNPISARNALEKMNGFDLAGRNMRV 412
>RNPS1_RAT (Q6AYK1) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 31.6 bits (70), Expect = 1.8 Identities = 11/33 (33%), Positives = 21/33 (63%) Frame = +3 Query: 78 SRGFGFVTFSEPRAVDVAIREMHNGELDGRTIS 176 S+G+ +V F P + A++ M G++DG+ I+ Sbjct: 202 SKGYAYVEFENPDEAEKALKHMDGGQIDGQEIT 234
>RNPS1_PONPY (Q5NVM8) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 31.6 bits (70), Expect = 1.8 Identities = 11/33 (33%), Positives = 21/33 (63%) Frame = +3 Query: 78 SRGFGFVTFSEPRAVDVAIREMHNGELDGRTIS 176 S+G+ +V F P + A++ M G++DG+ I+ Sbjct: 202 SKGYAYVEFENPDEAEKALKHMDGGQIDGQEIT 234
>RNPS1_MOUSE (Q99M28) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 31.6 bits (70), Expect = 1.8 Identities = 11/33 (33%), Positives = 21/33 (63%) Frame = +3 Query: 78 SRGFGFVTFSEPRAVDVAIREMHNGELDGRTIS 176 S+G+ +V F P + A++ M G++DG+ I+ Sbjct: 202 SKGYAYVEFENPDEAEKALKHMDGGQIDGQEIT 234
>RNPS1_MACFA (Q4R5N1) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 31.6 bits (70), Expect = 1.8 Identities = 11/33 (33%), Positives = 21/33 (63%) Frame = +3 Query: 78 SRGFGFVTFSEPRAVDVAIREMHNGELDGRTIS 176 S+G+ +V F P + A++ M G++DG+ I+ Sbjct: 202 SKGYAYVEFENPDEAEKALKHMDGGQIDGQEIT 234
>RNPS1_HUMAN (Q15287) RNA-binding protein with serine-rich domain 1 (SR-related| protein LDC2) Length = 305 Score = 31.6 bits (70), Expect = 1.8 Identities = 11/33 (33%), Positives = 21/33 (63%) Frame = +3 Query: 78 SRGFGFVTFSEPRAVDVAIREMHNGELDGRTIS 176 S+G+ +V F P + A++ M G++DG+ I+ Sbjct: 202 SKGYAYVEFENPDEAEKALKHMDGGQIDGQEIT 234
>ZCHC6_MOUSE (Q5BLK4) Zinc finger CCHC domain-containing protein 6| Length = 1491 Score = 31.6 bits (70), Expect = 1.8 Identities = 16/32 (50%), Positives = 19/32 (59%) Frame = +3 Query: 306 CFKCGRPGHWARECPYSVGGRPGRYSPPSRYV 401 CF CGR GH +ECP G PG S S+Y+ Sbjct: 1449 CFICGREGHIKKECP-QFKGSPGSLS--SKYM 1477
>ACF_PONPY (Q5R9H4) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 587 Score = 31.6 bits (70), Expect = 1.8 Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 2/51 (3%) Frame = +3 Query: 66 DTGRSRGFGFVTFSEPRAVDVAIREMHNG--ELDGRTISVNKAQPRVNSND 212 D ++RGF FV + RA +A R++ G +L G I+V+ A+P V ++ Sbjct: 174 DKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDE 224 Score = 30.8 bits (68), Expect = 3.0 Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 1/37 (2%) Frame = +3 Query: 72 GRSRGFGFVTFSEPRAVDVAIREMHNGEL-DGRTISV 179 G +RG+ FVTFS AI++++N E+ +GR + V Sbjct: 93 GNNRGYAFVTFSNKLEAKNAIKQLNNYEIRNGRLLGV 129
>ACF_HUMAN (Q9NQ94) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 594 Score = 31.2 bits (69), Expect = 2.3 Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 2/51 (3%) Frame = +3 Query: 66 DTGRSRGFGFVTFSEPRAVDVAIREMHNG--ELDGRTISVNKAQPRVNSND 212 D ++RGF FV + RA +A R++ G +L G I+V+ A+P V ++ Sbjct: 174 DKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVEVDE 224 Score = 30.4 bits (67), Expect = 4.0 Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 1/37 (2%) Frame = +3 Query: 72 GRSRGFGFVTFSEPRAVDVAIREMHNGEL-DGRTISV 179 G +RG+ FVTFS AI++++N E+ +GR + V Sbjct: 93 GNNRGYAFVTFSNKVEAKNAIKQLNNYEIRNGRLLGV 129
>ZCHC5_HUMAN (Q8N8U3) Zinc finger CCHC domain-containing protein 5| Length = 475 Score = 31.2 bits (69), Expect = 2.3 Identities = 10/15 (66%), Positives = 12/15 (80%) Frame = +3 Query: 306 CFKCGRPGHWARECP 350 C CG PGH+AR+CP Sbjct: 445 CLYCGYPGHFARDCP 459
>TRA2B_RAT (P62997) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) (RA301) Length = 288 Score = 31.2 bits (69), Expect = 2.3 Identities = 17/44 (38%), Positives = 23/44 (52%) Frame = +3 Query: 51 VVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVN 182 +V ++ + RSRGF FV F A + ELDGR I V+ Sbjct: 149 IVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 192
>TRA2B_MOUSE (P62996) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) (Silica-induced gene 41 protein) (SIG-41) Length = 288 Score = 31.2 bits (69), Expect = 2.3 Identities = 17/44 (38%), Positives = 23/44 (52%) Frame = +3 Query: 51 VVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVN 182 +V ++ + RSRGF FV F A + ELDGR I V+ Sbjct: 149 IVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 192
>TRA2B_HUMAN (P62995) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) Length = 288 Score = 31.2 bits (69), Expect = 2.3 Identities = 17/44 (38%), Positives = 23/44 (52%) Frame = +3 Query: 51 VVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVN 182 +V ++ + RSRGF FV F A + ELDGR I V+ Sbjct: 149 IVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 192
>GAG_SRV1 (P04022) Gag polyprotein (Core polyprotein) [Contains: Core protein| p10; Core phosphoprotein pp18; Core protein p12; Core protein p27; Core protein p14; Core protein p4] Length = 657 Score = 31.2 bits (69), Expect = 2.3 Identities = 10/14 (71%), Positives = 12/14 (85%) Frame = +3 Query: 306 CFKCGRPGHWAREC 347 CFKCGR GH+A+ C Sbjct: 549 CFKCGRKGHFAKNC 562
>ACF_MOUSE (Q5YD48) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 595 Score = 31.2 bits (69), Expect = 2.3 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 2/51 (3%) Frame = +3 Query: 66 DTGRSRGFGFVTFSEPRAVDVAIREMHNG--ELDGRTISVNKAQPRVNSND 212 D ++RGF FV + RA +A R + G +L G I+V+ A+P V ++ Sbjct: 174 DKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDE 224 Score = 31.2 bits (69), Expect = 2.3 Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 1/37 (2%) Frame = +3 Query: 72 GRSRGFGFVTFSEPRAVDVAIREMHNGEL-DGRTISV 179 G +RG+ FVTFS + AI++++N E+ GR + V Sbjct: 93 GNNRGYAFVTFSNKQEAKNAIKQLNNYEIRTGRLLGV 129
>PPIL4_SCHPO (Q9UUE4) Peptidyl-prolyl cis-trans isomerase cyp6 (EC 5.2.1.8)| (PPIase cyp6) (Rotamase cyp8) Length = 432 Score = 31.2 bits (69), Expect = 2.3 Identities = 15/48 (31%), Positives = 27/48 (56%) Frame = +3 Query: 48 QVVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQ 191 QV+ +++TG S + F+ F +V+ A +M N +D I V+ +Q Sbjct: 274 QVIRDKETGDSLQYAFIEFDNKESVEKAYFKMQNVLIDDSRIHVDFSQ 321
>PABP2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PABP 2) Length = 629 Score = 30.8 bits (68), Expect = 3.0 Identities = 15/49 (30%), Positives = 25/49 (51%) Frame = +3 Query: 51 VVTERDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPR 197 VV + G+S+GFGFV F A+ ++ + D + V +AQ + Sbjct: 245 VVMKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKK 293
>GAG_MLVDU (P23090) Gag polyprotein [Contains: Core protein p15; Inner coat| protein p12; Core shell protein p30; Nucleoprotein p10] Length = 528 Score = 30.8 bits (68), Expect = 3.0 Identities = 11/25 (44%), Positives = 13/25 (52%) Frame = +3 Query: 300 DDCFKCGRPGHWARECPYSVGGRPG 374 D C C GHWA++CP G G Sbjct: 492 DQCAYCKEKGHWAKDCPKKPRGPRG 516
>CAZ_DROME (Q27294) RNA-binding protein cabeza (Sarcoma-associated RNA-binding| fly homolog) (P19) Length = 399 Score = 30.8 bits (68), Expect = 3.0 Identities = 16/49 (32%), Positives = 25/49 (51%) Frame = +3 Query: 63 RDTGRSRGFGFVTFSEPRAVDVAIREMHNGELDGRTISVNKAQPRVNSN 209 ++TG S+G VT+ + A AI + +G I V+ AQ + N N Sbjct: 163 KETGASKGEATVTYDDTNAAQSAIEWFDGRDFNGNAIKVSLAQRQNNWN 211
>GAG_MLVHO (P21435) Gag polyprotein [Contains: Core protein p15; Inner coat| protein p12; Core shell protein p30; Nucleoprotein p10] Length = 539 Score = 30.8 bits (68), Expect = 3.0 Identities = 11/25 (44%), Positives = 13/25 (52%) Frame = +3 Query: 300 DDCFKCGRPGHWARECPYSVGGRPG 374 D C C GHWA++CP G G Sbjct: 503 DQCAYCKEKGHWAKDCPKKPRGPRG 527
>MRD1_YARLI (Q6CEW9) Multiple RNA-binding domain-containing protein 1| Length = 828 Score = 30.8 bits (68), Expect = 3.0 Identities = 14/34 (41%), Positives = 19/34 (55%) Frame = +3 Query: 78 SRGFGFVTFSEPRAVDVAIREMHNGELDGRTISV 179 S GFGFV FS A ++A + M LDG + + Sbjct: 650 SMGFGFVEFSSKEAAEIAQKAMDGHVLDGHKLQL 683
>GAG_CAEVC (P33458) Gag polyprotein [Contains: Core protein p16; Core protein| p25; Core protein p14] Length = 441 Score = 30.8 bits (68), Expect = 3.0 Identities = 9/14 (64%), Positives = 12/14 (85%) Frame = +3 Query: 306 CFKCGRPGHWAREC 347 C+ CG+PGH AR+C Sbjct: 381 CYNCGKPGHQARQC 394
>GAG_VILVK (P35955) Gag polyprotein [Contains: Core protein p16; Core protein| p25; Core protein p14] Length = 442 Score = 30.8 bits (68), Expect = 3.0 Identities = 9/14 (64%), Positives = 12/14 (85%) Frame = +3 Query: 306 CFKCGRPGHWAREC 347 C+ CG+PGH AR+C Sbjct: 387 CYNCGKPGHLARQC 400
>GAG_VILV2 (P23425) Gag polyprotein [Contains: Core protein p16; Core protein| p25; Core protein p14] Length = 442 Score = 30.8 bits (68), Expect = 3.0 Identities = 9/14 (64%), Positives = 12/14 (85%) Frame = +3 Query: 306 CFKCGRPGHWAREC 347 C+ CG+PGH AR+C Sbjct: 387 CYNCGKPGHLARQC 400
>GAG_VILV1 (P23424) Gag polyprotein [Contains: Core protein p16; Core protein| p25; Core protein p14] Length = 442 Score = 30.8 bits (68), Expect = 3.0 Identities = 9/14 (64%), Positives = 12/14 (85%) Frame = +3 Query: 306 CFKCGRPGHWAREC 347 C+ CG+PGH AR+C Sbjct: 387 CYNCGKPGHLARQC 400
>GAG_VILV (P03352) Gag polyprotein [Contains: Core protein p16; Core protein| p25; Core protein p14] Length = 442 Score = 30.8 bits (68), Expect = 3.0 Identities = 9/14 (64%), Positives = 12/14 (85%) Frame = +3 Query: 306 CFKCGRPGHWAREC 347 C+ CG+PGH AR+C Sbjct: 387 CYNCGKPGHLARQC 400 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 70,937,649 Number of Sequences: 219361 Number of extensions: 1283913 Number of successful extensions: 5482 Number of sequences better than 10.0: 301 Number of HSP's better than 10.0 without gapping: 4483 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5320 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5101629520 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
