ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags8l05 |
|---|---|
| Clone Library Name | barley_pub |
>CXCR5_HUMAN (P32302) C-X-C chemokine receptor type 5 (CXC-R5) (CXCR-5)| (Burkitt'S lymphoma receptor 1) (Monocyte-derived receptor 15) (MDR-15) (CD185 antigen) Length = 372 Score = 33.1 bits (74), Expect = 0.52 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%) Frame = +2 Query: 401 SLFLLRAAGFLLPCYIMAWIF-SILHRRRQ 487 S FL AGFLLP +M W + ++HR RQ Sbjct: 218 SRFLYHVAGFLLPMLVMGWCYVGVVHRLRQ 247
>LOLA4_DROME (Q867Z4) Longitudinals lacking protein, isoforms F/I/K/T| Length = 970 Score = 32.3 bits (72), Expect = 0.89 Identities = 17/59 (28%), Positives = 27/59 (45%) Frame = -1 Query: 383 HHLLHCPRSTMHVSEATEPLE*VQQNGRMQHHLHQYHRIRRTLLQEDDAVQLLQQEFLG 207 HH+ T H+ + +G+ QH Q+H+ LQ+DD V+ + E LG Sbjct: 802 HHIHAGQLQTHHIQTVVQ-----SSSGQQQHDQQQHHQHHSIELQDDDGVETITPEELG 855
>CXCR5_RAT (P34997) C-X-C chemokine receptor type 5 (CXC-R5) (CXCR-5)| (Burkitt'S lymphoma receptor 1 homolog) (Neurolymphatic receptor) (NLR) (CD185 antigen) Length = 374 Score = 32.3 bits (72), Expect = 0.89 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 8/67 (11%) Frame = +2 Query: 359 ISDNEGDDDASTMF-SLFLLRAAGFLLPCYIMAWIF-SILH------RRRQNEEAASIAT 514 I E + + F S FL GFLLP +MAW + ++H RR Q ++A +A Sbjct: 205 IFSQENEAETRAWFASRFLYHTGGFLLPMLVMAWCYVGVVHRLLQAQRRPQRQKAVRVAI 264 Query: 515 AEVAFIL 535 + L Sbjct: 265 LVTSIFL 271
>MARH4_HUMAN (Q9P2E8) Membrane-associated RING finger protein 4| (Membrane-associated RING-CH protein IV) (MARCH-IV) (RING finger protein 174) Length = 410 Score = 28.1 bits (61), Expect(2) = 1.0 Identities = 8/21 (38%), Positives = 16/21 (76%) Frame = +2 Query: 44 CVQRWCNEKGDITCEICHEQY 106 C+ +W +E+G +CE+C+ +Y Sbjct: 192 CLIKWISERGCWSCELCYYKY 212 Score = 22.7 bits (47), Expect(2) = 1.0 Identities = 7/12 (58%), Positives = 9/12 (75%) Frame = +1 Query: 1 PCTCNGSLKYAH 36 PC C+GS+K H Sbjct: 178 PCRCDGSVKCTH 189
>MARH4_MOUSE (Q80TE3) Membrane-associated RING finger protein 4| (Membrane-associated RING-CH protein IV) (MARCH-IV) Length = 408 Score = 28.1 bits (61), Expect(2) = 1.0 Identities = 8/21 (38%), Positives = 16/21 (76%) Frame = +2 Query: 44 CVQRWCNEKGDITCEICHEQY 106 C+ +W +E+G +CE+C+ +Y Sbjct: 191 CLIKWISERGCWSCELCYYKY 211 Score = 22.7 bits (47), Expect(2) = 1.0 Identities = 7/12 (58%), Positives = 9/12 (75%) Frame = +1 Query: 1 PCTCNGSLKYAH 36 PC C+GS+K H Sbjct: 177 PCRCDGSVKCTH 188
>HUTH_BACAN (Q81Y45) Histidine ammonia-lyase (EC 4.3.1.3) (Histidase)| Length = 505 Score = 30.4 bits (67), Expect = 3.4 Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 1/72 (1%) Frame = -1 Query: 413 EEKERTW*KRHHLLHCPRSTMHVSEATEPLE*VQQNGRMQHHLHQ-YHRIRRTLLQEDDA 237 EE +R + + CP S V+E E +E + +NG++ + + + + L+Q+DD Sbjct: 12 EEMKRLLLEGEGVTACPTSMQKVAECREVVEKIVENGKVVYGITTGFGKFSDVLIQKDDV 71 Query: 236 VQLLQQEFLGHA 201 L HA Sbjct: 72 KALQHNLIQSHA 83
>BMP2K_HUMAN (Q9NSY1) BMP-2-inducible protein kinase (EC 2.7.11.1) (BIKe)| Length = 1161 Score = 29.6 bits (65), Expect = 5.8 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 5/43 (11%) Frame = -1 Query: 314 QQNGRMQHHLHQYHRIRRTLLQED-----DAVQLLQQEFLGHA 201 QQ + QHH H +H + + + Q+LQQ+FL H+ Sbjct: 480 QQQQQQQHHHHHHHHLLQDAYMQQYQHATQQQQMLQQQFLMHS 522
>SOHB_BUCAP (Q8K9P8) Probable protease sohB (EC 3.4.21.-)| Length = 342 Score = 29.6 bits (65), Expect = 5.8 Identities = 14/41 (34%), Positives = 24/41 (58%) Frame = +2 Query: 398 FSLFLLRAAGFLLPCYIMAWIFSILHRRRQNEEAASIATAE 520 + LFL +A FL +I +IF+I+ R+R +++ I E Sbjct: 7 YELFLAKAITFLFIIFITPFIFNIIKRKRTDQKKFKIILLE 47
>CXCR5_MOUSE (Q04683) C-X-C chemokine receptor type 5 (CXC-R5) (CXCR-5)| (Burkitt'S lymphoma receptor 1 homolog) (CD185 antigen) Length = 374 Score = 29.6 bits (65), Expect = 5.8 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 7/44 (15%) Frame = +2 Query: 401 SLFLLRAAGFLLPCYIMAWIF-SILH------RRRQNEEAASIA 511 S FL GFLLP +M W + ++H RR Q ++A +A Sbjct: 220 SRFLYHIGGFLLPMLVMGWCYVGVVHRLLQAQRRPQRQKAVRVA 263
>LPPX_MYCTU (P65306) Putative lipoprotein lppX precursor| Length = 233 Score = 29.3 bits (64), Expect = 7.6 Identities = 16/49 (32%), Positives = 24/49 (48%) Frame = +2 Query: 104 YKPGYTAPPRVQPDETNIDISGDWTITGAPLDLRDPRILAVAAAQRRLL 250 Y P RVQ D ++ + DW+ G+ +L R+L AA +LL Sbjct: 103 YNDEQGVPFRVQGDNISVKLFDDWSNLGSISELSTSRVLDPAAGVTQLL 151
>LPPX_MYCBO (P65307) Putative lipoprotein lppX precursor| Length = 233 Score = 29.3 bits (64), Expect = 7.6 Identities = 16/49 (32%), Positives = 24/49 (48%) Frame = +2 Query: 104 YKPGYTAPPRVQPDETNIDISGDWTITGAPLDLRDPRILAVAAAQRRLL 250 Y P RVQ D ++ + DW+ G+ +L R+L AA +LL Sbjct: 103 YNDEQGVPFRVQGDNISVKLFDDWSNLGSISELSTSRVLDPAAGVTQLL 151
>NPHN_MOUSE (Q9QZS7) Nephrin precursor (Renal glomerulus-specific cell adhesion| receptor) Length = 1242 Score = 28.9 bits (63), Expect = 9.9 Identities = 13/21 (61%), Positives = 15/21 (71%) Frame = +2 Query: 152 NIDISGDWTITGAPLDLRDPR 214 NID + WT G PLDL+DPR Sbjct: 870 NIDFT--WTKNGVPLDLQDPR 888
>NPHN_RAT (Q9R044) Nephrin precursor (Renal glomerulus-specific cell adhesion| receptor) Length = 1234 Score = 28.9 bits (63), Expect = 9.9 Identities = 13/21 (61%), Positives = 15/21 (71%) Frame = +2 Query: 152 NIDISGDWTITGAPLDLRDPR 214 NID + WT G PLDL+DPR Sbjct: 866 NIDFT--WTKNGVPLDLQDPR 884 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 81,129,058 Number of Sequences: 219361 Number of extensions: 1701024 Number of successful extensions: 5016 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 4831 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5008 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4373119116 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
