ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags8k21 |
|---|---|
| Clone Library Name | barley_pub |
>MRD1_CRYNE (Q5KJL5) Multiple RNA-binding domain-containing protein 1| Length = 769 Score = 37.4 bits (85), Expect = 0.025 Identities = 25/96 (26%), Positives = 45/96 (46%) Frame = +2 Query: 128 QSRIVVAENLPGDPSYQNLMKIFSAVGSVRTIRTCYPQTPNGPGPATNRSAKLDMLFANK 307 +S V+ +NLP + + +++ ++FSA G ++++R P G + R Sbjct: 638 KSTKVLVKNLPFEATKKDVRELFSAYGQLKSLRLPRKAVPTSTGAQSTRG---------- 687 Query: 308 LHAFVEYETHEDAEKAILELNDERNWRNGLRLQLLN 415 AF+E+ TH +A +A+ L L LQ N Sbjct: 688 -FAFLEFTTHTEAARAMEALKHTHLLGRHLVLQWAN 722
>PABP4_HUMAN (Q13310) Polyadenylate-binding protein 4 (Poly(A)-binding protein| 4) (PABP 4) (Inducible poly(A)-binding protein) (iPABP) (Activated-platelet protein 1) (APP-1) Length = 644 Score = 36.2 bits (82), Expect = 0.056 Identities = 35/131 (26%), Positives = 54/131 (41%), Gaps = 8/131 (6%) Frame = +2 Query: 2 AFVHNNPMLAA--------ALRTSSKLVVSGDGKRVKRRHPFTESDMQEFQSRIVVAENL 157 AFVH AA + + + V G K K R + +EF + V +N Sbjct: 141 AFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN--VYIKNF 198 Query: 158 PGDPSYQNLMKIFSAVGSVRTIRTCYPQTPNGPGPATNRSAKLDMLFANKLHAFVEYETH 337 + ++L ++FS G +++ + PNG +K FV YE H Sbjct: 199 GEEVDDESLKELFSQFGKTLSVKVM--RDPNGK---------------SKGFGFVSYEKH 241 Query: 338 EDAEKAILELN 370 EDA KA+ E+N Sbjct: 242 EDANKAVEEMN 252
>RSP3_CAEEL (Q9NEW6) Probable splicing factor, arginine/serine-rich 3 (CeSF2)| (CeSF2/ASF) Length = 258 Score = 34.7 bits (78), Expect = 0.16 Identities = 24/73 (32%), Positives = 31/73 (42%) Frame = +2 Query: 140 VVAENLPGDPSYQNLMKIFSAVGSVRTIRTCYPQTPNGPGPATNRSAKLDMLFANKLHAF 319 V NLPGD + + IF G ++ Y +G GPA AF Sbjct: 11 VYVGNLPGDVREKEVEDIFHKYGRIK-----YVDIKSGRGPA---------------FAF 50 Query: 320 VEYETHEDAEKAI 358 VE+E H DAE A+ Sbjct: 51 VEFEDHRDAEDAV 63
>SFRS1_ARATH (O22315) Pre-mRNA-splicing factor SF2 (SR1 protein)| Length = 303 Score = 33.9 bits (76), Expect = 0.28 Identities = 26/81 (32%), Positives = 32/81 (39%) Frame = +2 Query: 116 MQEFQSRIVVAENLPGDPSYQNLMKIFSAVGSVRTIRTCYPQTPNGPGPATNRSAKLDML 295 M SR V NLPGD + + +FS G V I P P G Sbjct: 1 MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPG-------------- 46 Query: 296 FANKLHAFVEYETHEDAEKAI 358 +AFVE++ DAE AI Sbjct: 47 -----YAFVEFDDARDAEDAI 62
>EPAB_XENTR (Q6DEY7) Embryonic polyadenylate-binding protein (Embryonic poly(A)| binding protein) (ePABP) Length = 629 Score = 33.9 bits (76), Expect = 0.28 Identities = 32/128 (25%), Positives = 52/128 (40%), Gaps = 6/128 (4%) Frame = +2 Query: 5 FVHNNPMLAA--ALRTSSKLVVSGD----GKRVKRRHPFTESDMQEFQSRIVVAENLPGD 166 FVH AA A++T + ++++ G RR E + + V +N D Sbjct: 142 FVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGED 201 Query: 167 PSYQNLMKIFSAVGSVRTIRTCYPQTPNGPGPATNRSAKLDMLFANKLHAFVEYETHEDA 346 + L +IFSA G+ +++ T G FV Y HE+A Sbjct: 202 MDDKRLREIFSAFGNTLSVKVMMDDTGRSRG-----------------FGFVNYGNHEEA 244 Query: 347 EKAILELN 370 +KA+ E+N Sbjct: 245 QKAVSEMN 252
>CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 632 Score = 33.5 bits (75), Expect = 0.36 Identities = 26/90 (28%), Positives = 36/90 (40%) Frame = +2 Query: 134 RIVVAENLPGDPSYQNLMKIFSAVGSVRTIRTCYPQTPNGPGPATNRSAKLDMLFANKLH 313 R V N+P + + + L IFS VGSV + R Y + P K + Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKP----------------KGY 59 Query: 314 AFVEYETHEDAEKAILELNDERNWRNGLRL 403 F EY+ E A A+ LN LR+ Sbjct: 60 GFCEYQDQETALSAMRNLNGREFSGRALRV 89
>CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 616 Score = 33.5 bits (75), Expect = 0.36 Identities = 26/90 (28%), Positives = 36/90 (40%) Frame = +2 Query: 134 RIVVAENLPGDPSYQNLMKIFSAVGSVRTIRTCYPQTPNGPGPATNRSAKLDMLFANKLH 313 R V N+P + + + L IFS VGSV + R Y + P K + Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKP----------------KGY 59 Query: 314 AFVEYETHEDAEKAILELNDERNWRNGLRL 403 F EY+ E A A+ LN LR+ Sbjct: 60 GFCEYQDQETALSAMRNLNGREFSGRALRV 89
>PABP3_HUMAN (Q9H361) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) (Testis-specific poly(A)-binding protein) Length = 631 Score = 33.1 bits (74), Expect = 0.48 Identities = 16/38 (42%), Positives = 22/38 (57%) Frame = +2 Query: 257 GPATNRSAKLDMLFANKLHAFVEYETHEDAEKAILELN 370 GPA + D +K FV +E HEDA+KA+ E+N Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
>PABP1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 33.1 bits (74), Expect = 0.48 Identities = 16/38 (42%), Positives = 22/38 (57%) Frame = +2 Query: 257 GPATNRSAKLDMLFANKLHAFVEYETHEDAEKAILELN 370 GPA + D +K FV +E HEDA+KA+ E+N Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
>PABP1_MOUSE (P29341) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 33.1 bits (74), Expect = 0.48 Identities = 16/38 (42%), Positives = 22/38 (57%) Frame = +2 Query: 257 GPATNRSAKLDMLFANKLHAFVEYETHEDAEKAILELN 370 GPA + D +K FV +E HEDA+KA+ E+N Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
>PABP1_HUMAN (P11940) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 33.1 bits (74), Expect = 0.48 Identities = 16/38 (42%), Positives = 22/38 (57%) Frame = +2 Query: 257 GPATNRSAKLDMLFANKLHAFVEYETHEDAEKAILELN 370 GPA + D +K FV +E HEDA+KA+ E+N Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
>PABP1_BOVIN (P61286) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 33.1 bits (74), Expect = 0.48 Identities = 16/38 (42%), Positives = 22/38 (57%) Frame = +2 Query: 257 GPATNRSAKLDMLFANKLHAFVEYETHEDAEKAILELN 370 GPA + D +K FV +E HEDA+KA+ E+N Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
>PABP_YEAST (P04147) Polyadenylate-binding protein, cytoplasmic and nuclear| (Poly(A)-binding protein) (PABP) (ARS consensus-binding protein ACBP-67) (Polyadenylate tail-binding protein) Length = 576 Score = 33.1 bits (74), Expect = 0.48 Identities = 18/39 (46%), Positives = 21/39 (53%) Frame = +2 Query: 257 GPATNRSAKLDMLFANKLHAFVEYETHEDAEKAILELND 373 GP + S + D K FV YE HEDA KA+ LND Sbjct: 242 GPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALND 280 Score = 33.1 bits (74), Expect = 0.48 Identities = 27/90 (30%), Positives = 38/90 (42%), Gaps = 1/90 (1%) Frame = +2 Query: 104 TESDMQEFQSRIVVAENLPGDPSYQNLMKIFSAVGSVRTIRTCYPQTPNGPGPATNRSAK 283 +ES E S + +L S +L IFS +GSV +IR C Sbjct: 27 SESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVC----------------- 69 Query: 284 LDMLFANKL-HAFVEYETHEDAEKAILELN 370 D + L +A+V + HE KAI +LN Sbjct: 70 RDAITKTSLGYAYVNFNDHEAGRKAIEQLN 99
>EPABB_XENLA (Q6GR16) Embryonic polyadenylate-binding protein-B (Embryonic| poly(A) binding protein-B) (ePABP-B) (ePAB-B) (XePABP-B) Length = 629 Score = 32.7 bits (73), Expect = 0.62 Identities = 31/128 (24%), Positives = 52/128 (40%), Gaps = 6/128 (4%) Frame = +2 Query: 5 FVHNNPMLAA--ALRTSSKLVVSGD----GKRVKRRHPFTESDMQEFQSRIVVAENLPGD 166 FVH AA A++T + ++++ G RR E + + V +N D Sbjct: 142 FVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGED 201 Query: 167 PSYQNLMKIFSAVGSVRTIRTCYPQTPNGPGPATNRSAKLDMLFANKLHAFVEYETHEDA 346 + L +IFSA G+ +++ + G FV Y HE+A Sbjct: 202 MDDKRLKEIFSAFGNTLSVKVMMDNSGRSRG-----------------FGFVNYGNHEEA 244 Query: 347 EKAILELN 370 +KA+ E+N Sbjct: 245 QKAVTEMN 252
>IF34_CAEEL (Q19706) Probable eukaryotic translation initiation factor 3| subunit 4 (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3g) Length = 256 Score = 32.7 bits (73), Expect = 0.62 Identities = 24/85 (28%), Positives = 37/85 (43%) Frame = +2 Query: 152 NLPGDPSYQNLMKIFSAVGSVRTIRTCYPQTPNGPGPATNRSAKLDMLFANKLHAFVEYE 331 NLP + + L +F +G V I + P K AFV +E Sbjct: 182 NLPQEMNEDELRDLFGKIGRVIRIFIARDKVTGLP----------------KGFAFVTFE 225 Query: 332 THEDAEKAILELNDERNWRNGLRLQ 406 + +DA +AI ELND R + L+++ Sbjct: 226 SRDDAARAIAELNDIRMYHMVLKVE 250
>PABP5_PONPY (P60050) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 32.3 bits (72), Expect = 0.81 Identities = 16/38 (42%), Positives = 22/38 (57%) Frame = +2 Query: 257 GPATNRSAKLDMLFANKLHAFVEYETHEDAEKAILELN 370 GP + D +K FV YETHE A+KA+L+L+ Sbjct: 223 GPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
>PABP5_PANTR (P60049) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 32.3 bits (72), Expect = 0.81 Identities = 16/38 (42%), Positives = 22/38 (57%) Frame = +2 Query: 257 GPATNRSAKLDMLFANKLHAFVEYETHEDAEKAILELN 370 GP + D +K FV YETHE A+KA+L+L+ Sbjct: 223 GPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
>PABP5_MACMU (Q7JGR2) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 32.3 bits (72), Expect = 0.81 Identities = 16/38 (42%), Positives = 22/38 (57%) Frame = +2 Query: 257 GPATNRSAKLDMLFANKLHAFVEYETHEDAEKAILELN 370 GP + D +K FV YETHE A+KA+L+L+ Sbjct: 223 GPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
>PABP5_HYLLA (P60048) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 32.3 bits (72), Expect = 0.81 Identities = 16/38 (42%), Positives = 22/38 (57%) Frame = +2 Query: 257 GPATNRSAKLDMLFANKLHAFVEYETHEDAEKAILELN 370 GP + D +K FV YETHE A+KA+L+L+ Sbjct: 223 GPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
>PABP5_HUMAN (Q96DU9) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 32.3 bits (72), Expect = 0.81 Identities = 16/38 (42%), Positives = 22/38 (57%) Frame = +2 Query: 257 GPATNRSAKLDMLFANKLHAFVEYETHEDAEKAILELN 370 GP + D +K FV YETHE A+KA+L+L+ Sbjct: 223 GPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
>PABP5_GORGO (P60047) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 32.3 bits (72), Expect = 0.81 Identities = 16/38 (42%), Positives = 22/38 (57%) Frame = +2 Query: 257 GPATNRSAKLDMLFANKLHAFVEYETHEDAEKAILELN 370 GP + D +K FV YETHE A+KA+L+L+ Sbjct: 223 GPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
>PABPA_XENLA (P20965) Polyadenylate-binding protein 1-A (Poly(A)-binding protein| 1-A) (Cytoplasmic poly(A)-binding protein 1-A) (PABP-A) (PABP 1-A) (xPABP1-A) Length = 633 Score = 32.3 bits (72), Expect = 0.81 Identities = 16/38 (42%), Positives = 22/38 (57%) Frame = +2 Query: 257 GPATNRSAKLDMLFANKLHAFVEYETHEDAEKAILELN 370 GPA + D +K FV +E HEDA+KA+ E+N Sbjct: 215 GPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMN 252
>SART3_PONPY (Q5REG1) Squamous cell carcinoma antigen recognized by T-cells 3| (SART-3) Length = 981 Score = 32.3 bits (72), Expect = 0.81 Identities = 26/99 (26%), Positives = 45/99 (45%) Frame = +2 Query: 155 LPGDPSYQNLMKIFSAVGSVRTIRTCYPQTPNGPGPATNRSAKLDMLFANKLHAFVEYET 334 LP + + L +I A G+V+ +R TNR+ K L A+VEYE Sbjct: 826 LPFSCTKEELEEICKAHGTVKDLRL-----------VTNRAGKPKGL------AYVEYEN 868 Query: 335 HEDAEKAILELNDERNWRNGLRLQLLNTCMTKCPVKGKT 451 A +A+++++ N +++ + N K P K +T Sbjct: 869 ESQASQAVMKMDGMTIKENVIKVAISNPPQRKVPEKPET 907
>SART3_HUMAN (Q15020) Squamous cell carcinoma antigen recognized by T-cells 3| (SART-3) (hSART-3) (Tat-interacting protein of 110 kDa) (Tip110) Length = 963 Score = 32.0 bits (71), Expect = 1.1 Identities = 26/99 (26%), Positives = 45/99 (45%) Frame = +2 Query: 155 LPGDPSYQNLMKIFSAVGSVRTIRTCYPQTPNGPGPATNRSAKLDMLFANKLHAFVEYET 334 LP + + L +I A G+V+ +R TNR+ K L A+VEYE Sbjct: 808 LPFSCTKEELEEICKAHGTVKDLRL-----------VTNRAGKPKGL------AYVEYEN 850 Query: 335 HEDAEKAILELNDERNWRNGLRLQLLNTCMTKCPVKGKT 451 A +A+++++ N +++ + N K P K +T Sbjct: 851 ESQASQAVMKMDGMTIKENIIKVAISNPPQRKVPEKPET 889
>EPABA_XENLA (Q98SP8) Embryonic polyadenylate-binding protein-A (Embryonic| poly(A) binding protein-A) (ePABP-A) (ePAB-A) (XePABP-A) Length = 629 Score = 31.6 bits (70), Expect = 1.4 Identities = 26/108 (24%), Positives = 44/108 (40%) Frame = +2 Query: 47 SSKLVVSGDGKRVKRRHPFTESDMQEFQSRIVVAENLPGDPSYQNLMKIFSAVGSVRTIR 226 + + V G K + R + + EF + V +N D + L +IFSA G+ +++ Sbjct: 164 NDRKVFVGHFKSRRERELEYGAKVMEFTN--VYIKNFGEDMDDKRLREIFSAFGNTLSVK 221 Query: 227 TCYPQTPNGPGPATNRSAKLDMLFANKLHAFVEYETHEDAEKAILELN 370 + G FV Y HE+A+KA+ E+N Sbjct: 222 VMMDDSGRSRG-----------------FGFVNYGNHEEAQKAVSEMN 252
>NUCL_RAT (P13383) Nucleolin (Protein C23)| Length = 712 Score = 31.6 bits (70), Expect = 1.4 Identities = 24/112 (21%), Positives = 50/112 (44%) Frame = +2 Query: 74 GKRVKRRHPFTESDMQEFQSRIVVAENLPGDPSYQNLMKIFSAVGSVRTIRTCYPQTPNG 253 G++ +R+ ++ +S+ +V NL + + L ++F ++ PQ P+G Sbjct: 468 GEKGQRQERTGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFIKV-----PQNPHG 522 Query: 254 PGPATNRSAKLDMLFANKLHAFVEYETHEDAEKAILELNDERNWRNGLRLQL 409 +K +AF+E+ + EDA++A+ N +RL+L Sbjct: 523 K---------------SKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLEL 559
>CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 572 Score = 31.6 bits (70), Expect = 1.4 Identities = 25/90 (27%), Positives = 35/90 (38%) Frame = +2 Query: 134 RIVVAENLPGDPSYQNLMKIFSAVGSVRTIRTCYPQTPNGPGPATNRSAKLDMLFANKLH 313 R V N+P + + + L IFS VG V + R Y + P K + Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKP----------------KGY 59 Query: 314 AFVEYETHEDAEKAILELNDERNWRNGLRL 403 F EY+ E A A+ LN LR+ Sbjct: 60 GFCEYQDQETALSAMRNLNGREFSGRALRV 89
>CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 31.6 bits (70), Expect = 1.4 Identities = 25/90 (27%), Positives = 35/90 (38%) Frame = +2 Query: 134 RIVVAENLPGDPSYQNLMKIFSAVGSVRTIRTCYPQTPNGPGPATNRSAKLDMLFANKLH 313 R V N+P + + + L IFS VG V + R Y + P K + Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKP----------------KGY 59 Query: 314 AFVEYETHEDAEKAILELNDERNWRNGLRL 403 F EY+ E A A+ LN LR+ Sbjct: 60 GFCEYQDQETALSAMRNLNGREFSGRALRV 89
>CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 31.6 bits (70), Expect = 1.4 Identities = 25/90 (27%), Positives = 35/90 (38%) Frame = +2 Query: 134 RIVVAENLPGDPSYQNLMKIFSAVGSVRTIRTCYPQTPNGPGPATNRSAKLDMLFANKLH 313 R V N+P + + + L IFS VG V + R Y + P K + Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKP----------------KGY 59 Query: 314 AFVEYETHEDAEKAILELNDERNWRNGLRL 403 F EY+ E A A+ LN LR+ Sbjct: 60 GFCEYQDQETALSAMRNLNGREFSGRALRV 89
>CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 580 Score = 31.6 bits (70), Expect = 1.4 Identities = 25/90 (27%), Positives = 35/90 (38%) Frame = +2 Query: 134 RIVVAENLPGDPSYQNLMKIFSAVGSVRTIRTCYPQTPNGPGPATNRSAKLDMLFANKLH 313 R V N+P + + + L IFS VG V + R Y + P K + Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKP----------------KGY 59 Query: 314 AFVEYETHEDAEKAILELNDERNWRNGLRL 403 F EY+ E A A+ LN LR+ Sbjct: 60 GFCEYQDQETALSAMRNLNGREFSGRALRV 89
>LAH1_YEAST (P33399) La protein homolog (La ribonucleoprotein) (La autoantigen| homolog) Length = 275 Score = 31.2 bits (69), Expect = 1.8 Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 12/76 (15%) Frame = +2 Query: 35 ALRTSSKLVVSGDGKRVKRRHPF----TESDMQEFQSRIVVAENLPGD-------PSYQ- 178 ALR+S L VS DG+ VKRR P + E R + N P + P Q Sbjct: 86 ALRSSEILEVSADGENVKRRVPLDLTAARNARIEQNQRTLAVMNFPHEDVEASQIPELQE 145 Query: 179 NLMKIFSAVGSVRTIR 226 NL F +G + +R Sbjct: 146 NLEAFFKKLGEINQVR 161
>TIAR_MOUSE (P70318) Nucleolysin TIAR (TIA-1-related protein)| Length = 392 Score = 31.2 bits (69), Expect = 1.8 Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 2/86 (2%) Frame = +2 Query: 128 QSRIVVAENLPGDPSYQNLMKIFSAVGSVRTIRTCYPQTPNGPGPATNRSAKLDML--FA 301 Q R + NL D + ++++FS +G ++ C T N S +L + Sbjct: 7 QPRTLYVGNLSRDVTEVLILQLFSQIGPCKS---CKMITEQPDSRRVNSSVGFSVLQHTS 63 Query: 302 NKLHAFVEYETHEDAEKAILELNDER 379 N + FVE+ H DA A+ +N + Sbjct: 64 NDPYCFVEFYEHRDAAAALAAMNGRK 89
>RBM19_MOUSE (Q8R3C6) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 952 Score = 31.2 bits (69), Expect = 1.8 Identities = 18/72 (25%), Positives = 36/72 (50%) Frame = +2 Query: 140 VVAENLPGDPSYQNLMKIFSAVGSVRTIRTCYPQTPNGPGPATNRSAKLDMLFANKLHAF 319 ++ N+P + + + ++FS G ++T+R P+ G G A++ F Sbjct: 826 ILVRNIPFQANQREIRELFSTFGELKTVR--LPKKMTGTG-------------AHRGFGF 870 Query: 320 VEYETHEDAEKA 355 V++ T +DA+KA Sbjct: 871 VDFITKQDAKKA 882
>PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 653 Score = 30.8 bits (68), Expect = 2.4 Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 2/71 (2%) Frame = +2 Query: 164 DPSYQNLM--KIFSAVGSVRTIRTCYPQTPNGPGPATNRSAKLDMLFANKLHAFVEYETH 337 DPS M ++F+++G V +IR C T RS +A+V + Sbjct: 88 DPSVTEAMLFELFNSIGPVASIRVCRDAV-------TRRSLG---------YAYVNFHNM 131 Query: 338 EDAEKAILELN 370 ED EKA+ ELN Sbjct: 132 EDGEKALDELN 142 Score = 30.4 bits (67), Expect = 3.1 Identities = 24/101 (23%), Positives = 38/101 (37%) Frame = +2 Query: 74 GKRVKRRHPFTESDMQEFQSRIVVAENLPGDPSYQNLMKIFSAVGSVRTIRTCYPQTPNG 253 G V RR ++ + + V +NL + + Q +F G + ++ Q Sbjct: 241 GHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKP 300 Query: 254 PGPATNRSAKLDMLFANKLHAFVEYETHEDAEKAILELNDE 376 G FV Y HE A+KA+ ELND+ Sbjct: 301 RG-----------------FGFVNYANHECAQKAVDELNDK 324
>NUCL_MACFA (Q4R4J7) Nucleolin| Length = 710 Score = 30.8 bits (68), Expect = 2.4 Identities = 22/94 (23%), Positives = 41/94 (43%) Frame = +2 Query: 128 QSRIVVAENLPGDPSYQNLMKIFSAVGSVRTIRTCYPQTPNGPGPATNRSAKLDMLFANK 307 +S+ +V NL + + L ++F ++ PQ NG +K Sbjct: 484 ESKTLVLSNLSYSATEETLQEVFEKATFIKV-----PQNQNGK---------------SK 523 Query: 308 LHAFVEYETHEDAEKAILELNDERNWRNGLRLQL 409 +AF+E+ + EDA++A+ N +RL+L Sbjct: 524 GYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 557
>NUCL_PONPY (Q5RF26) Nucleolin| Length = 711 Score = 30.8 bits (68), Expect = 2.4 Identities = 22/94 (23%), Positives = 41/94 (43%) Frame = +2 Query: 128 QSRIVVAENLPGDPSYQNLMKIFSAVGSVRTIRTCYPQTPNGPGPATNRSAKLDMLFANK 307 +S+ +V NL + + L ++F ++ PQ NG +K Sbjct: 485 ESKTLVLSNLSYSATEETLQEVFEKATFIKV-----PQNQNGK---------------SK 524 Query: 308 LHAFVEYETHEDAEKAILELNDERNWRNGLRLQL 409 +AF+E+ + EDA++A+ N +RL+L Sbjct: 525 GYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 558
>NUCL_HUMAN (P19338) Nucleolin (Protein C23)| Length = 709 Score = 30.8 bits (68), Expect = 2.4 Identities = 22/94 (23%), Positives = 41/94 (43%) Frame = +2 Query: 128 QSRIVVAENLPGDPSYQNLMKIFSAVGSVRTIRTCYPQTPNGPGPATNRSAKLDMLFANK 307 +S+ +V NL + + L ++F ++ PQ NG +K Sbjct: 483 ESKTLVLSNLSYSATEETLQEVFEKATFIKV-----PQNQNGK---------------SK 522 Query: 308 LHAFVEYETHEDAEKAILELNDERNWRNGLRLQL 409 +AF+E+ + EDA++A+ N +RL+L Sbjct: 523 GYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 556
>MRD1_YARLI (Q6CEW9) Multiple RNA-binding domain-containing protein 1| Length = 828 Score = 30.4 bits (67), Expect = 3.1 Identities = 23/88 (26%), Positives = 44/88 (50%) Frame = +2 Query: 104 TESDMQEFQSRIVVAENLPGDPSYQNLMKIFSAVGSVRTIRTCYPQTPNGPGPATNRSAK 283 T + S+I++ +NLP + + +++ K+F A GS++T+R P+ N Sbjct: 694 TTETKKAIDSKILI-KNLPFEATKKDVQKLFGAFGSLKTVRV--PKKFNS---------- 740 Query: 284 LDMLFANKLHAFVEYETHEDAEKAILEL 367 ++ AF EY + ++AE A+ L Sbjct: 741 -----ESRGFAFAEYVSAKEAEHAMSAL 763
>NUDEL_DROME (P98159) Serine protease nudel precursor (EC 3.4.21.-)| Length = 2616 Score = 30.0 bits (66), Expect = 4.0 Identities = 18/71 (25%), Positives = 32/71 (45%) Frame = +2 Query: 35 ALRTSSKLVVSGDGKRVKRRHPFTESDMQEFQSRIVVAENLPGDPSYQNLMKIFSAVGSV 214 ALR +K+ DG+ ++ FT S +F SR + G+ + +F+ + Sbjct: 672 ALRMRNKVATMSDGETKEKGETFTASPSVQFTSRAPGGFPVSGETMKASAQFMFNPNFGM 731 Query: 215 RTIRTCYPQTP 247 +I C+ TP Sbjct: 732 PSIPVCFYMTP 742
>NUCL_MOUSE (P09405) Nucleolin (Protein C23)| Length = 706 Score = 30.0 bits (66), Expect = 4.0 Identities = 26/123 (21%), Positives = 52/123 (42%) Frame = +2 Query: 74 GKRVKRRHPFTESDMQEFQSRIVVAENLPGDPSYQNLMKIFSAVGSVRTIRTCYPQTPNG 253 G++ +R+ ++ +S+ +V NL + + L ++F ++ PQ P+G Sbjct: 466 GEKGQRQERTGKTSTWSGESKTLVLSNLSYSATKETLEEVFEKATFIKV-----PQNPHG 520 Query: 254 PGPATNRSAKLDMLFANKLHAFVEYETHEDAEKAILELNDERNWRNGLRLQLLNTCMTKC 433 K +AF+E+ + EDA++A+ N +RL+L + Sbjct: 521 KP---------------KGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGSNSRSQ 565 Query: 434 PVK 442 P K Sbjct: 566 PSK 568
>TIAR_HUMAN (Q01085) Nucleolysin TIAR (TIA-1-related protein)| Length = 375 Score = 30.0 bits (66), Expect = 4.0 Identities = 19/84 (22%), Positives = 34/84 (40%) Frame = +2 Query: 128 QSRIVVAENLPGDPSYQNLMKIFSAVGSVRTIRTCYPQTPNGPGPATNRSAKLDMLFANK 307 Q R + NL D + ++++FS +G ++ + T N P Sbjct: 7 QPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP----------------- 49 Query: 308 LHAFVEYETHEDAEKAILELNDER 379 + FVE+ H DA A+ +N + Sbjct: 50 -YCFVEFYEHRDAAAALAAMNGRK 72
>NUCL_CHICK (P15771) Nucleolin (Protein C23)| Length = 694 Score = 30.0 bits (66), Expect = 4.0 Identities = 24/95 (25%), Positives = 41/95 (43%) Frame = +2 Query: 122 EFQSRIVVAENLPGDPSYQNLMKIFSAVGSVRTIRTCYPQTPNGPGPATNRSAKLDMLFA 301 E +S+ ++ NL S + L ++F S++ PQ G Sbjct: 457 ERESKTLIVNNLSYAASEETLQELFKKATSIKM-----PQNNQG---------------R 496 Query: 302 NKLHAFVEYETHEDAEKAILELNDERNWRNGLRLQ 406 K +AFVE+ T EDA++A+ N+ +RL+ Sbjct: 497 PKGYAFVEFPTAEDAKEALNSCNNTEIEGRAIRLE 531
>SART3_MOUSE (Q9JLI8) Squamous cell carcinoma antigen recognized by T-cells 3| (SART-3) (mSART-3) (Tumor-rejection antigen SART3) Length = 962 Score = 30.0 bits (66), Expect = 4.0 Identities = 25/96 (26%), Positives = 42/96 (43%) Frame = +2 Query: 155 LPGDPSYQNLMKIFSAVGSVRTIRTCYPQTPNGPGPATNRSAKLDMLFANKLHAFVEYET 334 LP + + L I A G+V+ +R TNR+ K L A+VEYE Sbjct: 808 LPFSCTKEELEDICKAHGTVKDLRL-----------VTNRAGKPKGL------AYVEYEN 850 Query: 335 HEDAEKAILELNDERNWRNGLRLQLLNTCMTKCPVK 442 A +A+++++ N +++ + N K P K Sbjct: 851 ESQASQAVMKMDGMTIRENVIKVAISNPPQRKVPEK 886
>U2AF1_MOUSE (Q9D883) Splicing factor U2AF 35 kDa subunit (U2 auxiliary factor| 35 kDa subunit) (U2 snRNP auxiliary factor small subunit) Length = 238 Score = 29.6 bits (65), Expect = 5.3 Identities = 12/28 (42%), Positives = 20/28 (71%) Frame = +2 Query: 311 HAFVEYETHEDAEKAILELNDERNWRNG 394 + +V++ EDAEKA+++LN+ W NG Sbjct: 111 NVYVKFRREEDAEKAVIDLNN--RWFNG 136
>PHO4_NEUCR (P15710) Phosphate-repressible phosphate permease| Length = 590 Score = 29.6 bits (65), Expect = 5.3 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 5/68 (7%) Frame = -3 Query: 386 SNSFHHSAPELPSQHPRESHTPQKHAACWQTA-----YLTWQIY**QDQDHLESEDSKSE 222 S S HS P +Q ++ + A W + Y+ W ++ DQD L S+ KS Sbjct: 338 SYSHDHSEPAQAAQPQIKTMVGPRPAGPWHSGAVLFWYVKWALFRGVDQDVLSSQQEKSV 397 Query: 221 LFSHCQQL 198 + S ++L Sbjct: 398 ISSDVEEL 405
>U2AF1_HUMAN (Q01081) Splicing factor U2AF 35 kDa subunit (U2 auxiliary factor| 35 kDa subunit) (U2 snRNP auxiliary factor small subunit) Length = 239 Score = 29.6 bits (65), Expect = 5.3 Identities = 12/28 (42%), Positives = 20/28 (71%) Frame = +2 Query: 311 HAFVEYETHEDAEKAILELNDERNWRNG 394 + +V++ EDAEKA+++LN+ W NG Sbjct: 111 NVYVKFRREEDAEKAVIDLNN--RWFNG 136
>PPIE_DROME (Q9V3G3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 300 Score = 28.9 bits (63), Expect = 9.0 Identities = 15/39 (38%), Positives = 19/39 (48%) Frame = +2 Query: 314 AFVEYETHEDAEKAILELNDERNWRNGLRLQLLNTCMTK 430 AF+EYE EDA AI +ND +R+ L K Sbjct: 50 AFIEYEQSEDAAAAIDNMNDSELCGRTIRVNLAKPVRVK 88 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 66,253,879 Number of Sequences: 219361 Number of extensions: 1222107 Number of successful extensions: 3422 Number of sequences better than 10.0: 47 Number of HSP's better than 10.0 without gapping: 3299 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3418 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3985467738 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
